Rh7BG075000

Glutelin type-A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0015562
Physical Location & Seq
Forward (+)
5108049 .. 5108428
380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG075000.1

Sequence Viewer

Length: 366 bp
ATGGAGATTGATCTTACACCAAGGTTGGCTAAGAAGGTTTATGGAGGAGATGGTGGTTCCTACCCTGCCTGGTCTCCGTCGGAGCTTCCCGTGCTCCGTGAAGGTGACATCGGAGCTGCCCAGCTCTCTCTAGAGAAGGACGGCCTTGCTCTCCCCAATTACTCTGACTCTGCCAGAGTTGCATATGTCCTTCAAGGTAATGGAGTAGTTGGAATTGTTATGCCGGAGAAGGAAGAAAAGGTTCTTCCAGTGAAGAAGGGTGATGCCATTGCTCTCCCTTTTGGAGTTATCACATGGTGGTACAACAAGGAGGACACTGAATTTGTGGTTCTTTTCTTGGGTGATACCAAAACGTACAGCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

121

Amino Acids

13.15

Weight (kDa)

4.67

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 11 - 118 3.5e-21 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 320
AdeI CACNNNGTG 1 cut(s) 297
AfaI GTAC 2 cut(s) 302, 356
AgsI TTSAA 1 cut(s) 194
AjnI CCWGG 1 cut(s) 68
AluBI AGCT 4 cut(s) 85, 116, 124, 360
AluI AGCT 4 cut(s) 85, 116, 124, 360
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 1 cut(s) 78
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 1 cut(s) 320
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
Asp700I GAANNNNTTC 1 cut(s) 240
AsuHPI GGTGA 3 cut(s) 116, 272, 353
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 103
BccI CCATC 1 cut(s) 44
BceAI ACGGC 1 cut(s) 157
BciT130I CCWGG 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 78
BfaI CTAG 1 cut(s) 131
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 1 cut(s) 253
BsaI GGTCTC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 20
Bse1I ACTGG 1 cut(s) 248
Bse3DI GCAATG 1 cut(s) 267
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 20
BseMI GCAATG 1 cut(s) 267
BseNI ACTGG 1 cut(s) 248
BseRI GAGGAG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 103
BseYI CCCAGC 1 cut(s) 120
BshFI GGCC 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 96
BsiSI CCGG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 78
BsnI GGCC 1 cut(s) 144
Bso31I GGTCTC 1 cut(s) 78
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 1 cut(s) 10
BspANI GGCC 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 58
BspTNI GGTCTC 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 267
BsrI ACTGG 1 cut(s) 248
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 70
BstDEI CTNAG 1 cut(s) 30
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 2 cut(s) 91, 179
BstNI CCWGG 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 103
BsuRI GGCC 1 cut(s) 144
BtsIMutI CAGTG 2 cut(s) 255, 315
Csp6I GTAC 2 cut(s) 301, 355
CviAII CATG 1 cut(s) 294
CviJI RGCY 6 cut(s) 29, 85, 116, 124, 144, 360
CviKI_1 RGCY 6 cut(s) 29, 85, 116, 124, 144, 360
CviQI GTAC 2 cut(s) 301, 355
DdeI CTNAG 1 cut(s) 30
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
DraIII CACNNNGTG 1 cut(s) 297
Eco130I CCWWGG 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 1 cut(s) 297
FaiI YATR 6 cut(s) 42, 184, 186, 221, 295, 364
FatI CATG 1 cut(s) 293
FauNDI CATATG 1 cut(s) 184
Fnu4HI GCNGC 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 1 cut(s) 131
GluI GCNGC 1 cut(s) 117
GsaI CCCAGC 1 cut(s) 124
HaeIII GGCC 1 cut(s) 144
HapII CCGG 1 cut(s) 224
Hin1II CATG 1 cut(s) 297
HinfI GANTC 1 cut(s) 167
HpaII CCGG 1 cut(s) 224
HphI GGTGA 3 cut(s) 116, 272, 353
Hpy188I TCNGA 3 cut(s) 82, 113, 166
Hpy188III TCNNGA 1 cut(s) 131
Hpy99I CGWCG 1 cut(s) 82
HpyAV CCTTC 6 cut(s) 28, 95, 130, 200, 223, 250
HpyCH4IV ACGT 1 cut(s) 353
HpyCH4V TGCA 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 2 cut(s) 91, 179
HpyF3I CTNAG 1 cut(s) 30
HpySE526I ACGT 1 cut(s) 353
Hsp92II CATG 1 cut(s) 297
Kzo9I GATC 1 cut(s) 10
LmnI GCTCC 3 cut(s) 82, 99, 113
LpnPI CCDG 7 cut(s) 55, 78, 82, 134, 187, 237, 261
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 1 cut(s) 253
MaeI CTAG 1 cut(s) 131
MaeII ACGT 1 cut(s) 353
MaeIII GTNAC 1 cut(s) 104
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 3 cut(s) 236, 245, 265
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 3 cut(s) 157, 213, 320
MlyI GAGTC 1 cut(s) 161
MmeI TCCRAC 2 cut(s) 60, 190
MnlI CCTC 2 cut(s) 38, 304
MroXI GAANNNNTTC 1 cut(s) 240
MspI CCGG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
MwoI GCNNNNNNNGC 2 cut(s) 91, 179
NdeI CATATG 1 cut(s) 184
NdeII GATC 1 cut(s) 10
NlaIII CATG 1 cut(s) 297
NlaIV GGNNCC 1 cut(s) 58
NmuCI GTSAC 1 cut(s) 104
PdmI GAANNNNTTC 1 cut(s) 240
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
Psp6I CCWGG 1 cut(s) 68
PspFI CCCAGC 1 cut(s) 120
PspGI CCWGG 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 58
RsaI GTAC 2 cut(s) 302, 356
RsaNI GTAC 2 cut(s) 301, 355
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 1 cut(s) 10
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 70
SduI GDGCHC 1 cut(s) 96
SfaNI GCATC 1 cut(s) 253
Sse9I AATT 3 cut(s) 157, 213, 320
SspMI CTAG 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 68
StyI CCWWGG 1 cut(s) 20
TaiI ACGT 1 cut(s) 356
TasI AATT 3 cut(s) 157, 213, 320
TscAI CASTG 2 cut(s) 255, 322
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 104
TspGWI ACGGA 2 cut(s) 66, 86
TspRI CASTG 2 cut(s) 255, 322
XapI RAATTY 1 cut(s) 320
XbaI TCTAGA 1 cut(s) 130
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.