Rroxscaffold_3G00268850

Glutelin type-A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0015562
Physical Location & Seq
Reverse (-)
61886746 .. 61887012
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00268850.1

Sequence Viewer

Length: 267 bp
ATGGAGATTGATCTTACACCAAGGTTGGCTAAGAAAGCTTATGGAGGAAATGGTGGTTCCTACTCTGCCTGGTCCCCGTTAGAGCTTCCCATGCTCCGTGAAGGTGACAACGGAGCTGCCAAGCTCTTTCTGGGGAAGAACGGCTTTGCCCTCCCCAATTACTCAGACTCTGCCAGAGTTGCTTATGTCCTTCAAGGTAATAGAGTGGTCGGAATTGTTCTACCGGAGAAGGAAGAAAAGGTACGTTCTTCCAGTGAAGAAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

88

Amino Acids

9.47

Weight (kDa)

6.24

Isoelectric Point (pI)

38.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 13 - 83 4.5e-10 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 243
AgsI TTSAA 1 cut(s) 194
AjnI CCWGG 1 cut(s) 68
AluBI AGCT 4 cut(s) 38, 85, 116, 124
AluI AGCT 4 cut(s) 38, 85, 116, 124
AlwNI CAGNNNCTG 1 cut(s) 170
ApeKI GCWGC 1 cut(s) 116
AspS9I GGNCC 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 116
AvaII GGWCC 1 cut(s) 72
BarI GAAGNNNNNNTAC 2 cut(s) 225, 257
BbvI GCAGC 1 cut(s) 103
BceAI ACGGC 1 cut(s) 157
BciT130I CCWGG 1 cut(s) 70
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 70
Bme18I GGWCC 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 2 cut(s) 58, 74
BmrFI CCNGG 1 cut(s) 70
BsaJI CCNNGG 1 cut(s) 20
BsaWI WCCGGW 1 cut(s) 223
Bse1I ACTGG 1 cut(s) 252
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 20
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 1 cut(s) 252
BseXI GCAGC 1 cut(s) 103
BsiSI CCGG 1 cut(s) 224
BslFI GGGAC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 58
Bsp143I GATC 1 cut(s) 10
BspCNI CTCAG 1 cut(s) 176
BspLI GGNNCC 2 cut(s) 58, 74
BsrI ACTGG 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 70
BstDEI CTNAG 2 cut(s) 30, 163
BstKTI GATC 1 cut(s) 13
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 3 cut(s) 35, 91, 179
BstNI CCWGG 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 259
CaiI CAGNNNCTG 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 72
Csp6I GTAC 1 cut(s) 242
CviAII CATG 1 cut(s) 91
CviJI RGCY 6 cut(s) 29, 38, 85, 116, 124, 144
CviKI_1 RGCY 6 cut(s) 29, 38, 85, 116, 124, 144
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 2 cut(s) 30, 163
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
Eco130I CCWWGG 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 1 cut(s) 94
FaiI YATR 3 cut(s) 42, 92, 186
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FaqI GGGAC 1 cut(s) 58
FatI CATG 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 117
HapII CCGG 1 cut(s) 224
Hin1II CATG 1 cut(s) 94
HindIII AAGCTT 1 cut(s) 36
HinfI GANTC 1 cut(s) 167
HpaII CCGG 1 cut(s) 224
HphI GGTGA 1 cut(s) 116
Hpy188I TCNGA 2 cut(s) 166, 212
HpyAV CCTTC 4 cut(s) 95, 200, 223, 254
HpyCH4IV ACGT 1 cut(s) 244
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 91, 179
HpyF3I CTNAG 2 cut(s) 30, 163
HpySE526I ACGT 1 cut(s) 244
Hsp92II CATG 1 cut(s) 94
Kzo9I GATC 1 cut(s) 10
LmnI GCTCC 2 cut(s) 99, 113
LpnPI CCDG 5 cut(s) 55, 82, 116, 187, 237
Lsp1109I GCAGC 1 cut(s) 103
MaeII ACGT 1 cut(s) 244
MaeIII GTNAC 1 cut(s) 104
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 3 cut(s) 148, 240, 245
MluCI AATT 2 cut(s) 157, 213
MlyI GAGTC 1 cut(s) 161
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 2 cut(s) 38, 161
MspI CCGG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
MwoI GCNNNNNNNGC 3 cut(s) 35, 91, 179
NdeII GATC 1 cut(s) 10
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 2 cut(s) 58, 74
NmuCI GTSAC 1 cut(s) 104
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PspN4I GGNNCC 2 cut(s) 58, 74
PspPI GGNCC 1 cut(s) 72
PstNI CAGNNNCTG 1 cut(s) 170
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 1 cut(s) 72
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 70
SetI ASST 9 cut(s) 26, 40, 87, 106, 118, 126, 199, 243, 247
SinI GGWCC 1 cut(s) 72
Sse9I AATT 2 cut(s) 157, 213
StyD4I CCNGG 1 cut(s) 68
StyI CCWWGG 1 cut(s) 20
TaiI ACGT 1 cut(s) 247
TasI AATT 2 cut(s) 157, 213
TscAI CASTG 1 cut(s) 259
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 104
TspGWI ACGGA 2 cut(s) 86, 126
TspRI CASTG 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 72
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.