Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010190.1

Orthogroup ID

OG0015562

Physical Location & Seq

Genomic Coordinates Reverse (-)

50961 .. 51218

Gene Structure 258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010190.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

atggagattgatcttacactaaggttggctaagaaagtttatggaggagatggtggttcctaccctgcctggtctccgtcggagcttcccatgcttcgtgaaggtgacatcggagctgcccagctctctctagagaaggatggccttgctctccccaattactctgactttgccagagttgcatatgtccttcaaggtaatggagtagttggaattgttctgccggagaaggaagaaaaggttcttccagtgaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

85

Amino Acids

9.15

Weight (kDa)

4.79

Isoelectric Point (pI)

41.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015562)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g37420
rosa_chinensis	RchiOBHm_Chr4g0444011 RchiOBHm_Chr7g0185521
rosa_multiflora	Rmu_co8222318.1_g000001 Rmu_sc0010190.1_g000015
rosa_roxburghii	Rroxscaffold_3G00268850
rosa_rugosa	Rorug04G0348900 Rorug07G0020800
rosa_samantha	Rh4CG435000 Rh4DG415900 Rh7AG072700 Rh7BG075000 Rh7BG148800 Rh7BG148900 Rh7CG075100 Rh7DG074900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	194
AjnI	CCWGG	1 cut(s)	68
AluBI	AGCT	3 cut(s)	85, 116, 124
AluI	AGCT	3 cut(s)	85, 116, 124
Alw26I	GTCTC	1 cut(s)	78
AoxI	GGCC	1 cut(s)	142
ApeKI	GCWGC	1 cut(s)	116
Asp700I	GAANNNNTTC	1 cut(s)	240
AsuHPI	GGTGA	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	2 cut(s)	44, 134
BciT130I	CCWGG	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	1 cut(s)	131
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	1 cut(s)	70
BsaI	GGTCTC	1 cut(s)	78
Bse1I	ACTGG	1 cut(s)	248
BseBI	CCWGG	1 cut(s)	70
BseGI	GGATG	1 cut(s)	145
BseNI	ACTGG	1 cut(s)	248
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	103
BseYI	CCCAGC	1 cut(s)	120
BshFI	GGCC	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	224
BsmAI	GTCTC	1 cut(s)	78
BsnI	GGCC	1 cut(s)	144
Bso31I	GGTCTC	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	10
BspANI	GGCC	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	58
BspTNI	GGTCTC	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	248
BssMI	GATC	1 cut(s)	10
Bst2UI	CCWGG	1 cut(s)	70
BstDEI	CTNAG	2 cut(s)	20, 30
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	1 cut(s)	13
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	2 cut(s)	91, 179
BstNI	CCWGG	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	255
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	5 cut(s)	29, 85, 116, 124, 144
CviKI_1	RGCY	5 cut(s)	29, 85, 116, 124, 144
DdeI	CTNAG	2 cut(s)	20, 30
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
Eco31I	GGTCTC	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	68
FaeI	CATG	1 cut(s)	94
FaiI	YATR	4 cut(s)	42, 92, 184, 186
FatI	CATG	1 cut(s)	90
FauNDI	CATATG	1 cut(s)	184
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	1 cut(s)	117
GsaI	CCCAGC	1 cut(s)	124
HaeIII	GGCC	1 cut(s)	144
HapII	CCGG	1 cut(s)	224
Hin1II	CATG	1 cut(s)	94
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	1 cut(s)	116
Hpy188I	TCNGA	3 cut(s)	82, 113, 166
Hpy188III	TCNNGA	2 cut(s)	98, 131
Hpy99I	CGWCG	1 cut(s)	82
HpyAV	CCTTC	4 cut(s)	95, 130, 200, 223
HpyCH4V	TGCA	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	2 cut(s)	91, 179
HpyF3I	CTNAG	2 cut(s)	20, 30
Hsp92II	CATG	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	10
LmnI	GCTCC	2 cut(s)	82, 113
LpnPI	CCDG	6 cut(s)	55, 78, 82, 134, 187, 237
Lsp1109I	GCAGC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	131
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MboII	GAAGA	2 cut(s)	236, 245
MluCI	AATT	2 cut(s)	157, 213
MmeI	TCCRAC	2 cut(s)	60, 190
MnlI	CCTC	1 cut(s)	38
MroXI	GAANNNNTTC	1 cut(s)	240
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	2 cut(s)	91, 179
NdeI	CATATG	1 cut(s)	184
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	1 cut(s)	94
NlaIV	GGNNCC	1 cut(s)	58
NmuCI	GTSAC	1 cut(s)	104
PdmI	GAANNNNTTC	1 cut(s)	240
PkrI	GCNGC	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	68
PspFI	CCCAGC	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	58
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	10
ScrFI	CCNGG	1 cut(s)	70
SetI	ASST	7 cut(s)	26, 87, 106, 118, 126, 199, 243
Sse9I	AATT	2 cut(s)	157, 213
SspMI	CTAG	1 cut(s)	131
StyD4I	CCNGG	1 cut(s)	68
TasI	AATT	2 cut(s)	157, 213
TscAI	CASTG	1 cut(s)	255
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	104
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	1 cut(s)	255
XbaI	TCTAGA	1 cut(s)	130
XmnI	GAANNNNTTC	1 cut(s)	240
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.