Rh7BG148800

Glutelin type-A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0015562
Physical Location & Seq
Reverse (-)
11053868 .. 11054314
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG148800.1

Sequence Viewer

Length: 447 bp
ATGGAGATTGATCTTACACCAAGGTTAGCTAATAAGGTTTATGGAGGAGATGGTGGTTCCTACTTTGCCTGGTCCTCATCGAAGCTTCCCATGCTCTGTGAAGGAGACATTGGAGCTGTCAAGCTCTCTATAGAAAATCACGGCTTTGCTCTCCCCAATTACTCTGACTCTACCAGAGTTGCTTATGTCCTTCAGGGTAATGGAGTAGTTGGAATTGTTCTGTCCGAGAAGGAAGAAAAGGTCCTTCTAGTGAAGAAGGGCAATGCCATTGCCCTCCCTTTTGGAGTTATCACTTGGTGGTACAACAAGGAGGACACTGAGTTTGTGGTTCTTTTCTTAGGTGATACCAAAACAGCTCACAGAAGGGGGGAGTTCACTGATTTCTATCTAAATGGTTCTAATGGCATTTTCACTGACTTCTCAACTGAGTTTGTTAGCCGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

148

Amino Acids

16.33

Weight (kDa)

5.15

Isoelectric Point (pI)

26.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 12 - 127 3.8e-20 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 176
AdeI CACNNNGTG 1 cut(s) 297
AfaI GTAC 1 cut(s) 302
AjnI CCWGG 1 cut(s) 68
AjuI GAANNNNNNNTTGG 2 cut(s) 93, 125
AluBI AGCT 5 cut(s) 29, 85, 116, 124, 356
AluI AGCT 5 cut(s) 29, 85, 116, 124, 356
Alw26I GTCTC 1 cut(s) 99
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
AspS9I GGNCC 2 cut(s) 72, 241
AsuHPI GGTGA 1 cut(s) 353
AvaII GGWCC 2 cut(s) 72, 241
BccI CCATC 1 cut(s) 44
BceAI ACGGC 1 cut(s) 157
BciT130I CCWGG 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 99
BfaI CTAG 1 cut(s) 248
BfmI CTRYAG 1 cut(s) 129
Bme1390I CCNGG 1 cut(s) 70
Bme18I GGWCC 2 cut(s) 72, 241
BmgT120I GGNCC 2 cut(s) 72, 241
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 70
BsaBI GATNNNNATC 1 cut(s) 384
BsaJI CCNNGG 1 cut(s) 20
Bse3DI GCAATG 2 cut(s) 267, 268
Bse8I GATNNNNATC 1 cut(s) 384
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 20
BseJI GATNNNNATC 1 cut(s) 384
BseMI GCAATG 2 cut(s) 267, 268
BseMII CTCAG 2 cut(s) 309, 417
BseRI GAGGAG 1 cut(s) 60
BsmAI GTCTC 1 cut(s) 99
Bsp143I GATC 1 cut(s) 10
BspCNI CTCAG 2 cut(s) 310, 418
BspLI GGNNCC 1 cut(s) 58
BsrDI GCAATG 2 cut(s) 267, 268
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 70
BstDEI CTNAG 3 cut(s) 318, 337, 426
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 1 cut(s) 91
BstNI CCWGG 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 68
BstSFI CTRYAG 1 cut(s) 129
BtsIMutI CAGTG 3 cut(s) 315, 375, 411
Cfr13I GGNCC 2 cut(s) 72, 241
Csp6I GTAC 1 cut(s) 301
CviAII CATG 2 cut(s) 91, 444
CviJI RGCY 7 cut(s) 29, 85, 116, 124, 144, 356, 438
CviKI_1 RGCY 7 cut(s) 29, 85, 116, 124, 144, 356, 438
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 3 cut(s) 318, 337, 426
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
DraIII CACNNNGTG 1 cut(s) 297
Eco130I CCWWGG 1 cut(s) 20
Eco47I GGWCC 2 cut(s) 72, 241
Eco57I CTGAAG 1 cut(s) 176
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 2 cut(s) 94, 447
FaiI YATR 5 cut(s) 42, 92, 131, 186, 445
FatI CATG 2 cut(s) 90, 443
FspBI CTAG 1 cut(s) 248
Hin1II CATG 2 cut(s) 94, 447
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 1 cut(s) 167
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 1 cut(s) 375
Hpy188I TCNGA 2 cut(s) 166, 226
Hpy8I GTNNAC 1 cut(s) 375
HpyAV CCTTC 6 cut(s) 95, 200, 223, 250, 254, 357
HpyF10VI GCNNNNNNNGC 1 cut(s) 91
HpyF3I CTNAG 3 cut(s) 318, 337, 426
Hsp92II CATG 2 cut(s) 94, 447
Kzo9I GATC 1 cut(s) 10
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 4 cut(s) 55, 82, 179, 187
MaeI CTAG 1 cut(s) 248
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 2 cut(s) 245, 265
MluCI AATT 2 cut(s) 157, 213
MlyI GAGTC 1 cut(s) 161
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 4 cut(s) 38, 85, 284, 304
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
MwoI GCNNNNNNNGC 1 cut(s) 91
NdeII GATC 1 cut(s) 10
NlaIII CATG 2 cut(s) 94, 447
NlaIV GGNNCC 1 cut(s) 58
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
PpuMI RGGWCCY 1 cut(s) 241
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 2 cut(s) 72, 241
PspPPI RGGWCCY 1 cut(s) 241
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 2 cut(s) 72, 241
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 70
SetI ASST 9 cut(s) 26, 31, 39, 87, 118, 126, 243, 343, 358
SfcI CTRYAG 1 cut(s) 129
SinI GGWCC 2 cut(s) 72, 241
Sse9I AATT 2 cut(s) 157, 213
SspMI CTAG 1 cut(s) 248
StyD4I CCNGG 1 cut(s) 68
StyI CCWWGG 1 cut(s) 20
TaqI TCGA 1 cut(s) 80
TasI AATT 2 cut(s) 157, 213
TscAI CASTG 3 cut(s) 322, 382, 418
TspRI CASTG 3 cut(s) 322, 382, 418
VpaK11BI GGWCC 2 cut(s) 72, 241
XspI CTAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.