FvH4_2g38090

Subtilisin-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
27601125 .. 27604939
3815 bp
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UTR
Exon/CDS
Intron
FvH4_2g38090.t1

Sequence Viewer

Length: 1692 bp
ATGATCAATACTTCAAGCCTTCAGGTGTTTCATTCATTCAAAATGAGCATGGAAGGCATCTCAATCTTCTTGGCATTTGCGACTCTCTTCCTTAGTAGTAGTAAAGCTAGTACTGATCAGACTAGCAACAGCAGCCGAGTTTATATTGTGTACATGGGATCTGCAGCTCCAAACTCTTTAACCAGCACTACAGCTTCCTTGAGGACTGACCATGCTCGCCTCCTTACTCTTCTGACGAGACGGAAAGGAAATGCGTTGGTGCACGTTTACAGGCATGGCTTCTCAGGATTCGCGGCCCGGCTCTCAGAGGAGGAGGCACTTCTTATGGCTCAGAAACCTGGAGTTGTATCTGTCTTTCCTGATCACTTATTGAAGCTCCACACCACTCATTCCTGGGATTTCCTCAAGTATCAGACCGAGTTAGAAATCAACTCATTTCCCAACAGCATCTCCGAGAATAACGACGCTGCTGGTGATGACACACCACCGGACTCTAAAGGATCTGACACCATAATTGGTATTATAGACACAGGTATTTGGCCGGAGTCGGAGAGTTTTAATGATAAGGGTATGGGTCCGATTCCGTCAAGGTGGAAGGGAACGTGCATGAAAGGACCTGATTTTACTTCATCCAGCTGTAATAGGAAGCTGATAGGAGCAAGATTTTACAACTCCGACGAGCTGATCGCAGACAACGACTCACCAAGGGATTTAGTTGGGCATGGAACACATGTTGCAGGCACAGCTGCAGGGAGTGTCGTACCGGGTGCATCCTACTACGGCCTAGCTGCTGGGACAGCCAAGGGAGGCTCCCCAGGTTCAAGGATCGCCATGTACAAAGTATGCACAGCACAGGGTTGCTCTGCATCGGCGATATTAGCAGCATTCGATGATGCTATTAGTGATGGGGTGGATGTTCTATCTCTGTCCCTTGGTTCGACAAGTTATCAGCCAGATTTGAGCAGCGACCCCATTGCAATGGGAGCTTTCCATGCAGTCGAGCGGGGGATCATAGTCGTGTCCTCGGCAGGGAATGATGGACCAAACCGTGAAACAGTTGCGAACTTTGCACCTTGGCTATTGACTGTTGCTGCTTCCACCATTGATCGGATTTTCCAGTCTAATGTGATCTTGGGGGCAAACAAAGTGATCCAGGGAGAAGGCATAAATTTTTCTAGTCTCCAGAAATCTCCTGTGCACCCACTGATATATGCACTTTCTGCGAAGACAGCAGACGCTGAGGAACCCGAAGCAAGAAACTGCGACGAAGGATCATTGGAGGAAAAACTGATCAAGGGAAAGATTGTTATCTGTGACACAGATGTTCCTTTCTATACTACTGAAAACCAAATTGCAACAGTGAAGAGTCTTGGCGGAATAGGTGTAGTTTTTACCCGGGATGATAATATTGGGATAATGGCAGACACATATGGAGCATTTCCAGCAACAGCCATCAGTTTAAAGGATGCCAAAGATATCTTCTCCTATATCAACTCAACCAGAAACCCAGTTGCAACGATCTTACCAACAGAGACTGTGACAAAGTATAAACCAGCACCCACAGTTGCATATTTTTCATCCAGAGGCCCCTCAGCTGCGACAAATAACATACTCAAGGCAAGCAAACTGTCCAAGCAGGCTTCTAAATTTTATGTGAATAAGTCACCAAAACTAGTAAACAATCATTTCTAA

Protein Analysis

564

Amino Acids

60.0

Weight (kDa)

6.2

Isoelectric Point (pI)

34.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I9 PF05922 47 - 127 4.1e-17 Peptidase inhibitor I9
Peptidase_S8 PF00082 167 - 532 1.1e-27 Subtilase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1003
AccII CGCG 1 cut(s) 293
AciI CCGC 3 cut(s) 293, 1003, 1374
AclWI GGATC 6 cut(s) 166, 508, 833, 1016, 1144, 1279
AcoI YGGCCR 1 cut(s) 539
AcsI RAATTY 2 cut(s) 1168, 1646
AcuI CTGAAG 1 cut(s) 5
AfaI GTAC 4 cut(s) 112, 152, 762, 836
AfiI CCNNNNNNNGG 2 cut(s) 1029, 1107
AflIII ACRYGT 1 cut(s) 730
AgsI TTSAA 4 cut(s) 15, 40, 373, 822
AhlI ACTAGT 1 cut(s) 1672
AjnI CCWGG 4 cut(s) 337, 392, 814, 1152
AjuI GAANNNNNNNTTGG 2 cut(s) 1463, 1495
Alw21I GWGCWC 2 cut(s) 264, 1200
Alw26I GTCTC 3 cut(s) 232, 1184, 1526
Alw44I GTGCAC 2 cut(s) 260, 1196
AlwI GGATC 6 cut(s) 166, 508, 833, 1016, 1144, 1279
AlwNI CAGNNNCTG 2 cut(s) 1238, 1535
Ama87I CYCGRG 1 cut(s) 1395
AoxI GGCC 4 cut(s) 294, 539, 781, 1585
ApaLI GTGCAC 2 cut(s) 260, 1196
ApeKI GCWGC 9 cut(s) 132, 164, 467, 746, 788, 881, 963, 1091, 1595
ApoI RAATTY 2 cut(s) 1168, 1646
AspS9I GGNCC 5 cut(s) 295, 575, 614, 1040, 1586
AsuC2I CCSGG 4 cut(s) 298, 765, 1396, 1397
AsuHPI GGTGA 3 cut(s) 485, 693, 1656
AvaI CYCGRG 1 cut(s) 1395
AvaII GGWCC 3 cut(s) 575, 614, 1040
BaeGI GKGCMC 2 cut(s) 264, 1200
BbsI GAAGAC 1 cut(s) 1232
Bbv12I GWGCWC 2 cut(s) 264, 1200
BbvCI CCTCAGC 2 cut(s) 1239, 1591
BbvI GCAGC 9 cut(s) 144, 176, 454, 733, 775, 893, 975, 1078, 1582
BccI CCATC 3 cut(s) 899, 1031, 1460
BceAI ACGGC 1 cut(s) 796
BcgI CGANNNNNNTGC 2 cut(s) 956, 990
BciT130I CCWGG 4 cut(s) 339, 394, 816, 1154
BclI TGATCA 4 cut(s) 3, 115, 361, 1290
BcnI CCSGG 4 cut(s) 298, 765, 1396, 1397
BcoDI GTCTC 3 cut(s) 232, 1184, 1526
BcuI ACTAGT 1 cut(s) 1672
BfaI CTAG 5 cut(s) 108, 123, 785, 1176, 1673
BfmI CTRYAG 3 cut(s) 162, 189, 747
BmcAI AGTACT 1 cut(s) 112
Bme1390I CCNGG 8 cut(s) 298, 339, 394, 765, 816, 1154, 1396, 1397
Bme18I GGWCC 3 cut(s) 575, 614, 1040
BmeT110I CYCGRG 1 cut(s) 1395
BmgT120I GGNCC 5 cut(s) 295, 575, 614, 1040, 1586
BmiI GGNNCC 4 cut(s) 576, 811, 1245, 1588
BmrFI CCNGG 8 cut(s) 298, 339, 394, 765, 816, 1154, 1396, 1397
BmrI ACTGGG 1 cut(s) 1502
BmsI GCATC 6 cut(s) 66, 456, 779, 875, 883, 1456
BmuI ACTGGG 1 cut(s) 1502
BpiI GAAGAC 1 cut(s) 1232
BpmI CTGGAG 2 cut(s) 360, 1166
Bpu10I CCTNAGC 2 cut(s) 1239, 1591
BpuEI CTTGAG 3 cut(s) 220, 389, 1598
BpuMI CCSGG 4 cut(s) 298, 765, 1396, 1397
BsaBI GATNNNNATC 1 cut(s) 1307
BsaJI CCNNGG 9 cut(s) 393, 704, 801, 814, 931, 1023, 1073, 1153, 1395
BsaWI WCCGGW 1 cut(s) 487
BsaXI ACNNNNNCTCC 2 cut(s) 434, 464
Bsc4I CCNNNNNNNGG 2 cut(s) 1029, 1107
Bse1I ACTGG 2 cut(s) 1117, 1508
Bse3DI GCAATG 2 cut(s) 972, 984
Bse8I GATNNNNATC 1 cut(s) 1307
BseBI CCWGG 4 cut(s) 339, 394, 816, 1154
BseDI CCNNGG 9 cut(s) 393, 704, 801, 814, 931, 1023, 1073, 1153, 1395
BseGI GGATG 6 cut(s) 629, 770, 919, 1405, 1471, 1577
BseJI GATNNNNATC 1 cut(s) 1307
BseLI CCNNNNNNNGG 2 cut(s) 1029, 1107
BseMI GCAATG 2 cut(s) 972, 984
BseMII CTCAG 5 cut(s) 297, 318, 344, 1230, 1605
BseNI ACTGG 2 cut(s) 1117, 1508
BseRI GAGGAG 2 cut(s) 323, 326
BseSI GKGCMC 2 cut(s) 264, 1200
BseXI GCAGC 9 cut(s) 144, 176, 454, 733, 775, 893, 975, 1078, 1582
BseYI CCCAGC 1 cut(s) 791
Bsh1236I CGCG 1 cut(s) 293
BshFI GGCC 4 cut(s) 296, 541, 783, 1587
BsiHKAI GWGCWC 2 cut(s) 264, 1200
BsiHKCI CYCGRG 1 cut(s) 1395
BsiSI CCGG 5 cut(s) 298, 488, 542, 764, 1396
BslFI GGGAC 2 cut(s) 808, 913
BslI CCNNNNNNNGG 2 cut(s) 1029, 1107
BsmAI GTCTC 3 cut(s) 232, 1184, 1526
BsmBI CGTCTC 1 cut(s) 232
BsmFI GGGAC 2 cut(s) 808, 913
BsmI GAATGC 1 cut(s) 884
BsnI GGCC 4 cut(s) 296, 541, 783, 1587
BsoBI CYCGRG 1 cut(s) 1395
Bsp1286I GDGCHC 2 cut(s) 264, 1200
Bsp1407I TGTACA 2 cut(s) 150, 834
BspACI CCGC 3 cut(s) 293, 1003, 1374
BspANI GGCC 4 cut(s) 296, 541, 783, 1587
BspCNI CTCAG 5 cut(s) 296, 317, 343, 1231, 1604
BspFNI CGCG 1 cut(s) 293
BspLI GGNNCC 4 cut(s) 576, 811, 1245, 1588
BspMAI CTGCAG 2 cut(s) 166, 751
BspPI GGATC 6 cut(s) 166, 508, 833, 1016, 1144, 1279
BsrBI CCGCTC 1 cut(s) 1003
BsrDI GCAATG 2 cut(s) 972, 984
BsrGI TGTACA 2 cut(s) 150, 834
BsrI ACTGG 2 cut(s) 1117, 1508
BssECI CCNNGG 9 cut(s) 393, 704, 801, 814, 931, 1023, 1073, 1153, 1395
BssT1I CCWWGG 4 cut(s) 704, 801, 931, 1073
Bst2UI CCWGG 4 cut(s) 339, 394, 816, 1154
Bst4CI ACNGT 7 cut(s) 1049, 1057, 1087, 1360, 1537, 1564, 1629
Bst6I CTCTTC 3 cut(s) 92, 234, 1358
BstAPI GCANNNNNTGC 1 cut(s) 1220
BstAUI TGTACA 2 cut(s) 150, 834
BstC8I GCNNGC 4 cut(s) 217, 739, 1621, 1638
BstDEI CTNAG 6 cut(s) 92, 283, 304, 330, 1239, 1591
BstF5I GGATG 6 cut(s) 629, 770, 919, 1405, 1471, 1577
BstFNI CGCG 1 cut(s) 293
BstMAI GTCTC 3 cut(s) 232, 1184, 1526
BstNI CCWGG 4 cut(s) 339, 394, 816, 1154
BstNSI RCATGY 1 cut(s) 734
BstSCI CCNGG 8 cut(s) 296, 337, 392, 763, 814, 1152, 1394, 1395
BstSFI CTRYAG 3 cut(s) 162, 189, 747
BstSLI GKGCMC 2 cut(s) 264, 1200
BstUI CGCG 1 cut(s) 293
BstV1I GCAGC 9 cut(s) 144, 176, 454, 733, 775, 893, 975, 1078, 1582
BstV2I GAAGAC 1 cut(s) 1232
BstX2I RGATCY 2 cut(s) 158, 500
BstXI CCANNNNNNTGG 1 cut(s) 979
BstYI RGATCY 2 cut(s) 158, 500
BsuRI GGCC 4 cut(s) 296, 541, 783, 1587
BtsCI GGATG 6 cut(s) 629, 770, 919, 1405, 1471, 1577
BtsIMutI CAGTG 2 cut(s) 1202, 1365
Cac8I GCNNGC 4 cut(s) 217, 739, 1621, 1638
CaiI CAGNNNCTG 2 cut(s) 1238, 1535
Cfr13I GGNCC 5 cut(s) 295, 575, 614, 1040, 1586
Cfr9I CCCGGG 1 cut(s) 1395
CseI GACGC 2 cut(s) 473, 1244
Csp6I GTAC 4 cut(s) 111, 151, 761, 835
CviAII CATG 9 cut(s) 49, 154, 212, 275, 607, 722, 731, 832, 992
CviQI GTAC 4 cut(s) 111, 151, 761, 835
DdeI CTNAG 6 cut(s) 92, 283, 304, 330, 1239, 1591
DraI TTTAAA 1 cut(s) 1461
EaeI YGGCCR 1 cut(s) 539
Eam1104I CTCTTC 3 cut(s) 92, 234, 1358
EarI CTCTTC 3 cut(s) 92, 234, 1358
EciI GGCGGA 1 cut(s) 1389
Eco130I CCWWGG 4 cut(s) 704, 801, 931, 1073
Eco32I GATATC 1 cut(s) 1477
Eco47I GGWCC 3 cut(s) 575, 614, 1040
Eco57I CTGAAG 1 cut(s) 5
Eco88I CYCGRG 1 cut(s) 1395
EcoO109I RGGNCCY 2 cut(s) 614, 1586
EcoRII CCWGG 4 cut(s) 337, 392, 814, 1152
EcoRV GATATC 1 cut(s) 1477
EcoT14I CCWWGG 4 cut(s) 704, 801, 931, 1073
ErhI CCWWGG 4 cut(s) 704, 801, 931, 1073
Esp3I CGTCTC 1 cut(s) 232
FaeI CATG 9 cut(s) 52, 157, 215, 278, 610, 725, 734, 835, 995
FaqI GGGAC 2 cut(s) 808, 913
FatI CATG 9 cut(s) 48, 153, 211, 274, 606, 721, 730, 831, 991
FauI CCCGC 1 cut(s) 996
FauNDI CATATG 1 cut(s) 1429
FbaI TGATCA 4 cut(s) 3, 115, 361, 1290
FokI GGATG 6 cut(s) 616, 757, 926, 1412, 1478, 1564
FspBI CTAG 5 cut(s) 108, 123, 785, 1176, 1673
GsaI CCCAGC 1 cut(s) 795
GsuI CTGGAG 2 cut(s) 360, 1166
HaeIII GGCC 4 cut(s) 296, 541, 783, 1587
HapII CCGG 5 cut(s) 298, 488, 542, 764, 1396
HgaI GACGC 2 cut(s) 473, 1244
Hin1II CATG 9 cut(s) 52, 157, 215, 278, 610, 725, 734, 835, 995
HinfI GANTC 7 cut(s) 82, 288, 491, 545, 580, 698, 1366
HpaII CCGG 5 cut(s) 298, 488, 542, 764, 1396
HphI GGTGA 3 cut(s) 485, 693, 1656
Hpy166II GTNNAC 5 cut(s) 151, 262, 268, 1198, 1678
Hpy188III TCNNGA 4 cut(s) 285, 359, 1183, 1581
Hpy8I GTNNAC 5 cut(s) 151, 262, 268, 1198, 1678
Hpy99I CGWCG 3 cut(s) 467, 680, 1268
HpyAV CCTTC 5 cut(s) 29, 47, 589, 1154, 1262
HpyCH4III ACNGT 7 cut(s) 1049, 1057, 1087, 1360, 1537, 1564, 1629
HpyCH4IV ACGT 2 cut(s) 264, 602
HpyF3I CTNAG 6 cut(s) 92, 283, 304, 330, 1239, 1591
HpySE526I ACGT 2 cut(s) 264, 602
Hsp92II CATG 9 cut(s) 52, 157, 215, 278, 610, 725, 734, 835, 995
Ksp22I TGATCA 4 cut(s) 3, 115, 361, 1290
LmnI GCTCC 6 cut(s) 172, 381, 656, 815, 983, 1433
Lsp1109I GCAGC 9 cut(s) 144, 176, 454, 733, 775, 893, 975, 1078, 1582
LweI GCATC 6 cut(s) 66, 456, 779, 875, 883, 1456
MaeI CTAG 5 cut(s) 108, 123, 785, 1176, 1673
MaeII ACGT 2 cut(s) 264, 602
MaeIII GTNAC 3 cut(s) 1313, 1537, 1662
MbiI CCGCTC 1 cut(s) 1003
MboII GAAGA 6 cut(s) 58, 79, 221, 1237, 1375, 1471
MflI RGATCY 2 cut(s) 158, 500
MhlI GDGCHC 2 cut(s) 264, 1200
MluCI AATT 4 cut(s) 513, 1168, 1350, 1646
MlyI GAGTC 5 cut(s) 76, 485, 554, 692, 1375
MmeI TCCRAC 2 cut(s) 528, 699
MseI TTAA 3 cut(s) 179, 558, 1460
MslI CAYNNNNRTG 2 cut(s) 977, 1016
MspA1I CMGCKG 3 cut(s) 636, 746, 1595
MspI CCGG 5 cut(s) 298, 488, 542, 764, 1396
MspR9I CCNGG 8 cut(s) 298, 339, 394, 765, 816, 1154, 1396, 1397
Mva1269I GAATGC 1 cut(s) 884
MvaI CCWGG 4 cut(s) 339, 394, 816, 1154
MvnI CGCG 1 cut(s) 293
NciI CCSGG 4 cut(s) 298, 765, 1396, 1397
NdeI CATATG 1 cut(s) 1429
NlaIII CATG 9 cut(s) 52, 157, 215, 278, 610, 725, 734, 835, 995
NlaIV GGNNCC 4 cut(s) 576, 811, 1245, 1588
NmeAIII GCCGAG 2 cut(s) 161, 1004
NmuCI GTSAC 3 cut(s) 1313, 1537, 1662
NspI RCATGY 1 cut(s) 734
PciI ACATGT 1 cut(s) 730
PcsI WCGNNNNNNNCGW 1 cut(s) 693
PctI GAATGC 1 cut(s) 884
PfeI GAWTC 2 cut(s) 288, 580
PleI GAGTC 5 cut(s) 76, 485, 553, 692, 1374
PpsI GAGTC 5 cut(s) 76, 485, 553, 692, 1374
PpuMI RGGWCCY 1 cut(s) 614
PscI ACATGT 1 cut(s) 730
Psp5II RGGWCCY 1 cut(s) 614
Psp6I CCWGG 4 cut(s) 337, 392, 814, 1152
PspFI CCCAGC 1 cut(s) 791
PspGI CCWGG 4 cut(s) 337, 392, 814, 1152
PspN4I GGNNCC 4 cut(s) 576, 811, 1245, 1588
PspPI GGNCC 5 cut(s) 295, 575, 614, 1040, 1586
PspPPI RGGWCCY 1 cut(s) 614
PstI CTGCAG 2 cut(s) 166, 751
PstNI CAGNNNCTG 2 cut(s) 1238, 1535
PsuI RGATCY 2 cut(s) 158, 500
PvuII CAGCTG 3 cut(s) 636, 746, 1595
RsaI GTAC 4 cut(s) 112, 152, 762, 836
RsaNI GTAC 4 cut(s) 111, 151, 761, 835
RseI CAYNNNNRTG 2 cut(s) 977, 1016
SaqAI TTAA 3 cut(s) 179, 558, 1460
Sau96I GGNCC 5 cut(s) 295, 575, 614, 1040, 1586
ScaI AGTACT 1 cut(s) 112
SchI GAGTC 5 cut(s) 76, 485, 554, 692, 1375
ScrFI CCNGG 8 cut(s) 298, 339, 394, 765, 816, 1154, 1396, 1397
SduI GDGCHC 2 cut(s) 264, 1200
SfaNI GCATC 6 cut(s) 66, 456, 779, 875, 883, 1456
SfcI CTRYAG 3 cut(s) 162, 189, 747
SinI GGWCC 3 cut(s) 575, 614, 1040
SmaI CCCGGG 1 cut(s) 1397
SmiMI CAYNNNNRTG 2 cut(s) 977, 1016
SmlI CTYRAG 3 cut(s) 199, 404, 1613
SmoI CTYRAG 3 cut(s) 199, 404, 1613
SpeI ACTAGT 1 cut(s) 1672
Sse9I AATT 4 cut(s) 513, 1168, 1350, 1646
SsiI CCGC 3 cut(s) 293, 1003, 1374
SspI AATATT 1 cut(s) 1408
SspMI CTAG 5 cut(s) 108, 123, 785, 1176, 1673
StyD4I CCNGG 8 cut(s) 296, 337, 392, 763, 814, 1152, 1394, 1395
StyI CCWWGG 4 cut(s) 704, 801, 931, 1073
TaaI ACNGT 7 cut(s) 1049, 1057, 1087, 1360, 1537, 1564, 1629
TaiI ACGT 2 cut(s) 267, 605
TaqI TCGA 3 cut(s) 888, 938, 999
TaqII GACCGA 1 cut(s) 431
TasI AATT 4 cut(s) 513, 1168, 1350, 1646
TatI WGTACW 3 cut(s) 110, 150, 834
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 2 cut(s) 288, 580
Tru1I TTAA 3 cut(s) 179, 558, 1460
Tru9I TTAA 3 cut(s) 179, 558, 1460
TscAI CASTG 2 cut(s) 1209, 1365
TseFI GTSAC 3 cut(s) 1313, 1537, 1662
TseI GCWGC 9 cut(s) 132, 164, 467, 746, 788, 881, 963, 1091, 1595
Tsp45I GTSAC 3 cut(s) 1313, 1537, 1662
TspDTI ATGAA 5 cut(s) 20, 24, 618, 623, 1566
TspGWI ACGGA 2 cut(s) 256, 573
TspMI CCCGGG 1 cut(s) 1395
TspRI CASTG 2 cut(s) 1209, 1365
VneI GTGCAC 2 cut(s) 260, 1196
VpaK11BI GGWCC 3 cut(s) 575, 614, 1040
XapI RAATTY 2 cut(s) 1168, 1646
XceI RCATGY 1 cut(s) 734
XmaI CCCGGG 1 cut(s) 1395
XspI CTAG 5 cut(s) 108, 123, 785, 1176, 1673
ZrmI AGTACT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.