Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008647

Physical Location & Seq

Genomic Coordinates Forward (+)

47292487 .. 47293003

Gene Structure 517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0321400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGAATTGGAAAACAGAGAAGGTGATTTTGGAGGCTTGGGGTCTAACCACTATGATTTTCATTAGCTTGACATTGTACACATTCTGGGCTGCAAGAAGAGGCCACGATTTCGGCTTTCTTGGTCCTTTTCTATTTGCAGATTTGGTTGTTCTTCTTGGATTTGGTTTGATTCAGTTATCGAGCTCTTTCTGTTTTGAGATGGTTCCAATTAATTCCAATGATTTTTCACCCTGTGGCATGGGTAAGATCAGTCGTATGATATACGGCATTGTGGGTTGTATCATCTTCTGTTACTACATTGTCTATGACACGGATAAGCTGATTAAGCGCCACCACTATGACGACTACATGCTGGCTGCAATCGAGCTGTATTTGGATGCGATCTACCTCTTCTCCAGTATGATCGCGGCTAGTGATAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0010033 GO:0010037 GO:0016787 GO:0017171 GO:0019538 GO:0030312 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0042221 GO:0042493 GO:0043170 GO:0043900 GO:0043901 GO:0044238 GO:0044464 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0070011 GO:0071704 GO:0071944 GO:0072347 GO:0080134 GO:0140096 GO:1900424 GO:1900425 GO:1901564 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

140

Amino Acids

16.01

Weight (kDa)

5.14

Isoelectric Point (pI)

33.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bax1-I	PF01027	6 - 135	1.5e-23	Inhibitor of apoptosis-promoting Bax1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20150 AT1G20160 AT1G20160 AT1G20160
fragaria_vesca	FvH4_2g38090
malus_domestica	MD08G1009400.v1.1
prunus_persica	Prupe.1G361300_v2.0.a1
pyrus_communis	pycom08g00790 pycom15g00680 pycom15g00690
rosa_chinensis	RchiOBHm_Chr3g0451701 RchiOBHm_Chr6g0303461
rosa_laevigata	RLG00000011082
rosa_multiflora	Rmu_ssc0000114.1_g000050
rosa_roxburghii	Rroxscaffold_7G00164720 Rroxscaffold_7G00164730
rosa_rugosa	Rorug06G0321400 Rorug06G0321500
rosa_samantha	Rh6AG436000 Rh6BG467600 Rh6CG447900 Rh6DG434600
rosa_wichuraiana	Rw6G037730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	407
AciI	CCGC	1 cut(s)	407
AdeI	CACNNNGTG	1 cut(s)	233
AfaI	GTAC	1 cut(s)	77
AjuI	GAANNNNNNNTTGG	2 cut(s)	11, 43
AluBI	AGCT	5 cut(s)	66, 183, 319, 367, 420
AluI	AGCT	5 cut(s)	66, 183, 319, 367, 420
Alw21I	GWGCWC	1 cut(s)	185
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	2 cut(s)	89, 356
AseI	ATTAAT	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	122
AsuHPI	GGTGA	2 cut(s)	34, 219
AvaII	GGWCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	2 cut(s)	76, 343
BccI	CCATC	1 cut(s)	193
BceAI	ACGGC	1 cut(s)	280
BfaI	CTAG	1 cut(s)	411
BfoI	RGCGCY	1 cut(s)	331
BisI	GCNGC	3 cut(s)	90, 357, 408
BlsI	GCNGC	3 cut(s)	91, 358, 409
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	204
BmsI	GCATC	1 cut(s)	367
BpmI	CTGGAG	1 cut(s)	379
BsaXI	ACNNNNNCTCC	2 cut(s)	377, 407
Bse1I	ACTGG	1 cut(s)	396
BseGI	GGATG	1 cut(s)	382
BseNI	ACTGG	1 cut(s)	396
BseXI	GCAGC	2 cut(s)	76, 343
Bsh1236I	CGCG	1 cut(s)	407
BshFI	GGCC	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp1407I	TGTACA	1 cut(s)	75
Bsp143I	GATC	3 cut(s)	246, 381, 402
BspACI	CCGC	1 cut(s)	407
BspANI	GGCC	1 cut(s)	102
BspFNI	CGCG	1 cut(s)	407
BspLI	GGNNCC	1 cut(s)	204
BsrGI	TGTACA	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	396
BssMI	GATC	3 cut(s)	246, 381, 402
Bst6I	CTCTTC	2 cut(s)	91, 395
BstAUI	TGTACA	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	354
BstF5I	GGATG	1 cut(s)	382
BstFNI	CGCG	1 cut(s)	407
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	3 cut(s)	249, 384, 405
BstMBI	GATC	3 cut(s)	246, 381, 402
BstMWI	GCNNNNNNNGC	1 cut(s)	325
BstNSI	RCATGY	1 cut(s)	352
BstUI	CGCG	1 cut(s)	407
BstV1I	GCAGC	2 cut(s)	76, 343
BsuRI	GGCC	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	382
Cac8I	GCNNGC	1 cut(s)	354
CfoI	GCGC	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	2 cut(s)	238, 349
CviQI	GTAC	1 cut(s)	76
DpnI	GATC	3 cut(s)	248, 383, 404
DpnII	GATC	3 cut(s)	246, 381, 402
DraIII	CACNNNGTG	1 cut(s)	233
Eam1104I	CTCTTC	2 cut(s)	91, 395
EarI	CTCTTC	2 cut(s)	91, 395
Ecl136II	GAGCTC	1 cut(s)	183
Eco24I	GRGCYC	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	122
Eco53kI	GAGCTC	1 cut(s)	183
EcoICRI	GAGCTC	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	185
FaeI	CATG	2 cut(s)	241, 352
FaiI	YATR	8 cut(s)	53, 239, 257, 262, 306, 339, 350, 401
FatI	CATG	2 cut(s)	237, 348
Fnu4HI	GCNGC	3 cut(s)	90, 357, 408
FokI	GGATG	1 cut(s)	389
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	3 cut(s)	90, 357, 408
FspBI	CTAG	1 cut(s)	411
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	3 cut(s)	90, 357, 408
GsuI	CTGGAG	1 cut(s)	379
HaeII	RGCGCY	1 cut(s)	331
HaeIII	GGCC	1 cut(s)	102
HhaI	GCGC	1 cut(s)	330
Hin1II	CATG	2 cut(s)	241, 352
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HinfI	GANTC	1 cut(s)	169
HphI	GGTGA	2 cut(s)	34, 219
Hpy166II	GTNNAC	1 cut(s)	78
Hpy8I	GTNNAC	1 cut(s)	78
HpyAV	CCTTC	1 cut(s)	13
HpyCH4V	TGCA	3 cut(s)	92, 137, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	325
Hsp92II	CATG	2 cut(s)	241, 352
HspAI	GCGC	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	246, 381, 402
LpnPI	CCDG	4 cut(s)	70, 244, 338, 409
Lsp1109I	GCAGC	2 cut(s)	76, 343
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	411
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	3 cut(s)	248, 383, 404
MboI	GATC	3 cut(s)	246, 381, 402
MboII	GAAGA	4 cut(s)	108, 143, 277, 382
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	3 cut(s)	4, 207, 211
MnlI	CCTC	3 cut(s)	25, 92, 398
MseI	TTAA	2 cut(s)	210, 324
MslI	CAYNNNNRTG	1 cut(s)	336
MvnI	CGCG	1 cut(s)	407
MwoI	GCNNNNNNNGC	1 cut(s)	325
NdeII	GATC	3 cut(s)	246, 381, 402
NlaIII	CATG	2 cut(s)	241, 352
NlaIV	GGNNCC	1 cut(s)	204
NspI	RCATGY	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	169
PkrI	GCNGC	3 cut(s)	91, 358, 409
PshBI	ATTAAT	1 cut(s)	210
Psp124BI	GAGCTC	1 cut(s)	185
PspN4I	GGNNCC	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	122
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	336
SacI	GAGCTC	1 cut(s)	185
SaqAI	TTAA	2 cut(s)	210, 324
SatI	GCNGC	3 cut(s)	90, 357, 408
Sau3AI	GATC	3 cut(s)	246, 381, 402
Sau96I	GGNCC	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	7 cut(s)	24, 68, 185, 321, 369, 390, 422
SfaNI	GCATC	1 cut(s)	367
SinI	GGWCC	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	336
Sse9I	AATT	3 cut(s)	4, 207, 211
SsiI	CCGC	1 cut(s)	407
SspMI	CTAG	1 cut(s)	411
SstI	GAGCTC	1 cut(s)	185
TaqI	TCGA	2 cut(s)	179, 363
TasI	AATT	3 cut(s)	4, 207, 211
TatI	WGTACW	1 cut(s)	75
TauI	GCSGC	1 cut(s)	410
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	2 cut(s)	210, 324
Tru9I	TTAA	2 cut(s)	210, 324
TseI	GCWGC	2 cut(s)	89, 356
TspDTI	ATGAA	2 cut(s)	17, 49
TspGWI	ACGGA	1 cut(s)	326
VpaK11BI	GGWCC	1 cut(s)	122
VspI	ATTAAT	1 cut(s)	210
XceI	RCATGY	1 cut(s)	352
XspI	CTAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.