Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0008647

Physical Location & Seq

Genomic Coordinates Reverse (-)

62604066 .. 62606485

Gene Structure 2420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG447900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGGTCCGATTCCATCAAGGTGGAAGGGAGCATGCATGAAAGGACCTGATTTTACTTCATCCAGCTCTCCTGGCGTGGACATTCTTGCAGCTTGGACGGGCAATGACACGGTGGTTACTCCATCTGGAAAAGAGGCCCCAAAATTCAATGTGCTCTCAGGGACTTCAATGGCATGCCCACATGTGTCTGGGATAGCAGCCACCGTCAAATCTCAAAACCCCACATGGAGTCCATCAGCCATCAGATCAGCCATCATGACAACAGCAACTCAAATAAACAATTTGAAAACCCCAATCACTACAGATTCAAGTTCAATAGCCACACCATACGATTATGGTGCGGGGGAAGTAACAGTAACTGGCCCGCTACATCCAGGTCTGGTATATGAAACTGACACCATTGACTACTTGAACTACCTCTGCTATTATGGGTTTGATACATCCAAACTCAAAACCATCGCTAGAACTGCTCCAATAGGTTTTGCTTGCCCCAAAGACTCCAAGGCTGATTACATATCCAACATCAACTACCCATCAATAACAATTTCCAAATTCAATGGAAAAGAAAGCAGGAATATAAGCAGGAAGGTTACAAATGTTGCAGGAGATGGTGAAGTGGTTTTCACAGCGATCGTGGATACACCTAGAGGTCTAAGCGTCAAAGTGATTCCTGATAAACTACATTTTTCAAAGAACAACCAGAAGCTCAGTTATCAAATGGTTTTCTCTTCAACCACATCTGTTCCCAAGGAAGACATGTTTGGGTCTCTTACATGGAGCAATGGAAAGTATAAAGTCCGAAGTCCATTTGTTGTAAGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0010033 GO:0010037 GO:0016787 GO:0017171 GO:0019538 GO:0030312 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0042221 GO:0042493 GO:0043170 GO:0043900 GO:0043901 GO:0044238 GO:0044464 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0070011 GO:0071704 GO:0071944 GO:0072347 GO:0080134 GO:0140096 GO:1900424 GO:1900425 GO:1901564 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

274

Amino Acids

29.44

Weight (kDa)

9.13

Isoelectric Point (pI)

30.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S8	PF00082	32 - 101	7.7e-14	Subtilase family
fn3_6	PF17766	174 - 272	4.1e-27	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20150 AT1G20160 AT1G20160 AT1G20160
fragaria_vesca	FvH4_2g38090
malus_domestica	MD08G1009400.v1.1
prunus_persica	Prupe.1G361300_v2.0.a1
pyrus_communis	pycom08g00790 pycom15g00680 pycom15g00690
rosa_chinensis	RchiOBHm_Chr3g0451701 RchiOBHm_Chr6g0303461
rosa_laevigata	RLG00000011082
rosa_multiflora	Rmu_ssc0000114.1_g000050
rosa_roxburghii	Rroxscaffold_7G00164720 Rroxscaffold_7G00164730
rosa_rugosa	Rorug06G0321400 Rorug06G0321500
rosa_samantha	Rh6AG436000 Rh6BG467600 Rh6CG447900 Rh6DG434600
rosa_wichuraiana	Rw6G037730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	341, 365
AcsI	RAATTY	2 cut(s)	143, 551
AflIII	ACRYGT	2 cut(s)	181, 756
AgsI	TTSAA	9 cut(s)	148, 168, 286, 309, 315, 412, 556, 690, 732
AjnI	CCWGG	2 cut(s)	70, 373
AjuI	GAANNNNNNNTTGG	2 cut(s)	744, 776
AluBI	AGCT	3 cut(s)	66, 92, 706
AluI	AGCT	3 cut(s)	66, 92, 706
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	771
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	2 cut(s)	135, 361
ApeKI	GCWGC	2 cut(s)	89, 197
ApoI	RAATTY	2 cut(s)	143, 551
AspS9I	GGNCC	4 cut(s)	5, 44, 136, 362
AsuHPI	GGTGA	1 cut(s)	623
AvaII	GGWCC	2 cut(s)	5, 44
BbsI	GAAGAC	1 cut(s)	759
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	101, 209
BccI	CCATC	8 cut(s)	22, 130, 241, 248, 260, 464, 541, 602
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BciT130I	CCWGG	2 cut(s)	72, 375
BciVI	GTATCC	1 cut(s)	631
BcoDI	GTCTC	1 cut(s)	771
BfaI	CTAG	2 cut(s)	462, 645
BfmI	CTRYAG	1 cut(s)	300
BfuI	GTATCC	1 cut(s)	631
BisI	GCNGC	2 cut(s)	90, 198
BlsI	GCNGC	2 cut(s)	91, 199
Bme1390I	CCNGG	2 cut(s)	72, 375
Bme18I	GGWCC	2 cut(s)	5, 44
BmgT120I	GGNCC	4 cut(s)	5, 44, 136, 362
BmiI	GGNNCC	2 cut(s)	6, 138
BmrFI	CCNGG	2 cut(s)	72, 375
BpiI	GAAGAC	1 cut(s)	759
BsaI	GGTCTC	1 cut(s)	771
BsaJI	CCNNGG	2 cut(s)	501, 747
Bse1I	ACTGG	1 cut(s)	364
Bse3DI	GCAATG	2 cut(s)	109, 787
BseBI	CCWGG	2 cut(s)	72, 375
BseDI	CCNNGG	2 cut(s)	501, 747
BseGI	GGATG	3 cut(s)	59, 370, 440
BseMI	GCAATG	2 cut(s)	109, 787
BseMII	CTCAG	2 cut(s)	171, 721
BseNI	ACTGG	1 cut(s)	364
BseXI	GCAGC	2 cut(s)	101, 209
Bsh1285I	CGRYCG	1 cut(s)	633
BshFI	GGCC	2 cut(s)	137, 363
BsiEI	CGRYCG	1 cut(s)	633
BsiHKAI	GWGCWC	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	771
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	2 cut(s)	137, 363
Bso31I	GGTCTC	1 cut(s)	771
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	245, 630
BspACI	CCGC	2 cut(s)	341, 365
BspANI	GGCC	2 cut(s)	137, 363
BspCNI	CTCAG	2 cut(s)	170, 720
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	2 cut(s)	6, 138
BspTNI	GGTCTC	1 cut(s)	771
BsrDI	GCAATG	2 cut(s)	109, 787
BsrI	ACTGG	1 cut(s)	364
BssECI	CCNNGG	2 cut(s)	501, 747
BssMI	GATC	2 cut(s)	245, 630
BssT1I	CCWWGG	2 cut(s)	501, 747
Bst2UI	CCWGG	2 cut(s)	72, 375
Bst4CI	ACNGT	3 cut(s)	112, 205, 355
Bst6I	CTCTTC	1 cut(s)	733
BstC8I	GCNNGC	4 cut(s)	34, 175, 365, 487
BstDEI	CTNAG	3 cut(s)	157, 653, 707
BstF5I	GGATG	3 cut(s)	59, 370, 440
BstKTI	GATC	2 cut(s)	248, 633
BstMAI	GTCTC	1 cut(s)	771
BstMBI	GATC	2 cut(s)	245, 630
BstMCI	CGRYCG	1 cut(s)	633
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 467
BstNI	CCWGG	2 cut(s)	72, 375
BstNSI	RCATGY	4 cut(s)	36, 177, 185, 760
BstSCI	CCNGG	2 cut(s)	70, 373
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	2 cut(s)	101, 209
BstV2I	GAAGAC	1 cut(s)	759
BstXI	CCANNNNNNTGG	1 cut(s)	21
BsuI	GTATCC	1 cut(s)	631
BsuRI	GGCC	2 cut(s)	137, 363
BtgZI	GCGATG	1 cut(s)	442
BtsCI	GGATG	3 cut(s)	59, 370, 440
Cac8I	GCNNGC	4 cut(s)	34, 175, 365, 487
CaiI	CAGNNNCTG	1 cut(s)	359
CciI	TCATGA	1 cut(s)	255
Cfr13I	GGNCC	4 cut(s)	5, 44, 136, 362
CseI	GACGC	1 cut(s)	646
CviAII	CATG	8 cut(s)	33, 37, 174, 182, 225, 256, 757, 774
DdeI	CTNAG	3 cut(s)	157, 653, 707
DpnI	GATC	2 cut(s)	247, 632
DpnII	GATC	2 cut(s)	245, 630
Eam1104I	CTCTTC	1 cut(s)	733
EarI	CTCTTC	1 cut(s)	733
Eco130I	CCWWGG	2 cut(s)	501, 747
Eco31I	GGTCTC	1 cut(s)	771
Eco47I	GGWCC	2 cut(s)	5, 44
EcoO109I	RGGNCCY	2 cut(s)	44, 136
EcoRII	CCWGG	2 cut(s)	70, 373
EcoT14I	CCWWGG	2 cut(s)	501, 747
EcoT22I	ATGCAT	1 cut(s)	38
ErhI	CCWWGG	2 cut(s)	501, 747
FaeI	CATG	8 cut(s)	36, 40, 177, 185, 228, 259, 760, 777
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	8 cut(s)	32, 36, 173, 181, 224, 255, 756, 773
FauI	CCCGC	2 cut(s)	334, 372
Fnu4HI	GCNGC	2 cut(s)	90, 198
FokI	GGATG	3 cut(s)	46, 357, 427
Fsp4HI	GCNGC	2 cut(s)	90, 198
FspBI	CTAG	2 cut(s)	462, 645
GluI	GCNGC	2 cut(s)	90, 198
HaeIII	GGCC	2 cut(s)	137, 363
HgaI	GACGC	1 cut(s)	646
Hin1II	CATG	8 cut(s)	36, 40, 177, 185, 228, 259, 760, 777
HinfI	GANTC	5 cut(s)	10, 229, 305, 497, 667
HphI	GGTGA	1 cut(s)	623
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	3 cut(s)	9, 245, 800
Hpy188III	TCNNGA	3 cut(s)	126, 256, 671
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	2 cut(s)	19, 580
HpyCH4III	ACNGT	3 cut(s)	112, 205, 355
HpyCH4V	TGCA	3 cut(s)	36, 89, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 467
HpyF3I	CTNAG	3 cut(s)	157, 653, 707
Hsp92II	CATG	8 cut(s)	36, 40, 177, 185, 228, 259, 760, 777
Kzo9I	GATC	2 cut(s)	245, 630
LmnI	GCTCC	3 cut(s)	29, 475, 777
Lsp1109I	GCAGC	2 cut(s)	101, 209
MaeI	CTAG	2 cut(s)	462, 645
MaeIII	GTNAC	4 cut(s)	115, 349, 355, 589
MalI	GATC	2 cut(s)	247, 632
MboI	GATC	2 cut(s)	245, 630
MboII	GAAGA	2 cut(s)	720, 764
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	4 cut(s)	143, 280, 543, 551
MlyI	GAGTC	2 cut(s)	238, 491
MmeI	TCCRAC	1 cut(s)	543
MnlI	CCTC	3 cut(s)	127, 428, 641
Mph1103I	ATGCAT	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	19
MspR9I	CCNGG	2 cut(s)	72, 375
MvaI	CCWGG	2 cut(s)	72, 375
MwoI	GCNNNNNNNGC	2 cut(s)	72, 467
NdeII	GATC	2 cut(s)	245, 630
NlaIII	CATG	8 cut(s)	36, 40, 177, 185, 228, 259, 760, 777
NlaIV	GGNNCC	2 cut(s)	6, 138
NsiI	ATGCAT	1 cut(s)	38
NspI	RCATGY	4 cut(s)	36, 177, 185, 760
PaeI	GCATGC	2 cut(s)	36, 177
PagI	TCATGA	1 cut(s)	255
PciI	ACATGT	2 cut(s)	181, 756
PfeI	GAWTC	3 cut(s)	10, 305, 667
PkrI	GCNGC	2 cut(s)	91, 199
Ple19I	CGATCG	1 cut(s)	633
PleI	GAGTC	2 cut(s)	237, 491
PpsI	GAGTC	2 cut(s)	237, 491
PpuMI	RGGWCCY	1 cut(s)	44
PscI	ACATGT	2 cut(s)	181, 756
Psp5II	RGGWCCY	1 cut(s)	44
Psp6I	CCWGG	2 cut(s)	70, 373
PspGI	CCWGG	2 cut(s)	70, 373
PspN4I	GGNNCC	2 cut(s)	6, 138
PspPI	GGNCC	4 cut(s)	5, 44, 136, 362
PspPPI	RGGWCCY	1 cut(s)	44
PstNI	CAGNNNCTG	1 cut(s)	359
PvuI	CGATCG	1 cut(s)	633
RseI	CAYNNNNRTG	1 cut(s)	19
SatI	GCNGC	2 cut(s)	90, 198
Sau3AI	GATC	2 cut(s)	245, 630
Sau96I	GGNCC	4 cut(s)	5, 44, 136, 362
SchI	GAGTC	2 cut(s)	238, 491
ScrFI	CCNGG	2 cut(s)	72, 375
SduI	GDGCHC	1 cut(s)	156
SfcI	CTRYAG	1 cut(s)	300
SinI	GGWCC	2 cut(s)	5, 44
SmiMI	CAYNNNNRTG	1 cut(s)	19
SphI	GCATGC	2 cut(s)	36, 177
Sse9I	AATT	4 cut(s)	143, 280, 543, 551
SsiI	CCGC	2 cut(s)	341, 365
SspMI	CTAG	2 cut(s)	462, 645
StyD4I	CCNGG	2 cut(s)	70, 373
StyI	CCWWGG	2 cut(s)	501, 747
TaaI	ACNGT	3 cut(s)	112, 205, 355
TasI	AATT	4 cut(s)	143, 280, 543, 551
TfiI	GAWTC	3 cut(s)	10, 305, 667
TseI	GCWGC	2 cut(s)	89, 197
TspDTI	ATGAA	3 cut(s)	48, 53, 402
VpaK11BI	GGWCC	2 cut(s)	5, 44
XapI	RAATTY	2 cut(s)	143, 551
XceI	RCATGY	4 cut(s)	36, 177, 185, 760
XspI	CTAG	2 cut(s)	462, 645
Zsp2I	ATGCAT	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.