Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008647

Physical Location & Seq

Genomic Coordinates Forward (+)

67592722 .. 67594368

Gene Structure 1647 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG467600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGATAGTTCTAAATGATTATTGTGAATCTCAGGGAGAAGGCATAAATTTTTCTAGTCTCCAGAAAGTTCCTGTGTACCCACTGATATATGCACCATCTGCCAAGACAGCAGACGCTGAGGAACCCGAAGCAAGAAACTGCGACAGACATTCATTGGACGAAAAAATGATCAAGGGAAAGATTGTAATCTGCGACACAGATGTACCTTTTTATACTACTGACAACCAAATTGAGGCCGTGAAGAGTCTTGGCGGAATAGGTGTAATTTTTAACAGGGATGATCATATCGGGATAATAGCAGACACATATGGAGCAGTTCCTGCAACCGCGATCAGTTTAAAGGATGCCAAAGACATCTTCTCCTATATCAACTCAACCAGAAACCCAGTTGCAACAATCTTACCAACAGAGACTGTGACAAAGTATAAACCAGCGCCCACGGTTGCATATTTTTCATCCAGGGGCCCTTCAGCTGCCACAAATAACATACTCAAGCCTGATATTGCAGCTCCTGGTGTGGACATTCTTGCAGCTTGGACGGGCAATGACATGGTGGTTACTCCATCTGGAAAAGAGGCCCCAAAATTCAATGTGCTCTCAGGGACTTCAATGGCATGCCCACATGTTTCTGGGATAGCAACCACCGTCAAATCTCAAAACCCCACATGGAGTCCATCAGCCATCAGATCAGCCATCATGACAACAGCAACTCGAATAAACAATTTGAAAACCCCAATCACTACAGATTCAAGTTCAATAGCCACACCATACGATTATGGTGCGGGGGAAGTAACAGTAACTGGACCGCTACATCCAGGTCTGGTATATGAAACTGACACCATTGATTACTTGAACTACCTCTGCTATTATGGGTTTGATACATCCAAACTCAAAACCATCGCTAGAACTGCTCCAATAGGTTTTGCTTGCCCCAAAGACTCCAAGGCTGATTACATATCCAACATCAACTACCCATCAATAGCAATTTCCAAATTCAATGGAAAAGAAAGCAGGAATATAAGCAGGAAGGTTACAAATGTTGCAGGAGATGGTGAAGTGGTTTTCACAGCGATCGTGGATACACCTAGAGGTCTAAGCGTCAAAGTGATTCCTGATAAACTACATTTTTCAAAGAACAACCAGAAGCTCAGTTATCAAATGGTTTTCTCTTCAACCGCATCTGTTCCCAAGGAAGACATGTTTGGGTCTCTTACATGGAGCAATGGAAAGTATAAAGTCCGAAGTCCATTTGTTGTAAGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0010033 GO:0010037 GO:0016787 GO:0017171 GO:0019538 GO:0030312 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0042221 GO:0042493 GO:0043170 GO:0043900 GO:0043901 GO:0044238 GO:0044464 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0070011 GO:0071704 GO:0071944 GO:0072347 GO:0080134 GO:0140096 GO:1900424 GO:1900425 GO:1901564 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

421

Amino Acids

45.42

Weight (kDa)

7.55

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S8	PF00082	138 - 251	1e-20	Subtilase family
fn3_6	PF17766	321 - 419	9.5e-27	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20150 AT1G20160 AT1G20160 AT1G20160
fragaria_vesca	FvH4_2g38090
malus_domestica	MD08G1009400.v1.1
prunus_persica	Prupe.1G361300_v2.0.a1
pyrus_communis	pycom08g00790 pycom15g00680 pycom15g00690
rosa_chinensis	RchiOBHm_Chr3g0451701 RchiOBHm_Chr6g0303461
rosa_laevigata	RLG00000011082
rosa_multiflora	Rmu_ssc0000114.1_g000050
rosa_roxburghii	Rroxscaffold_7G00164720 Rroxscaffold_7G00164730
rosa_rugosa	Rorug06G0321400 Rorug06G0321500
rosa_samantha	Rh6AG436000 Rh6BG467600 Rh6CG447900 Rh6DG434600
rosa_wichuraiana	Rw6G037730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	329
AciI	CCGC	5 cut(s)	252, 327, 782, 806, 1176
AcsI	RAATTY	3 cut(s)	46, 584, 992
AcuI	CTGAAG	1 cut(s)	453
AfaI	GTAC	2 cut(s)	77, 204
AfiI	CCNNNNNNNGG	1 cut(s)	232
AflIII	ACRYGT	2 cut(s)	622, 1197
AgsI	TTSAA	9 cut(s)	589, 609, 727, 750, 756, 853, 997, 1131, 1173
AjnI	CCWGG	3 cut(s)	458, 511, 814
AjuI	GAANNNNNNNTTGG	4 cut(s)	341, 373, 1185, 1217
AluBI	AGCT	4 cut(s)	473, 509, 533, 1147
AluI	AGCT	4 cut(s)	473, 509, 533, 1147
Alw21I	GWGCWC	1 cut(s)	597
Alw26I	GTCTC	3 cut(s)	62, 404, 1212
AlwNI	CAGNNNCTG	5 cut(s)	116, 320, 413, 512, 800
AoxI	GGCC	3 cut(s)	234, 463, 576
ApaI	GGGCCC	1 cut(s)	467
ApeKI	GCWGC	3 cut(s)	473, 506, 530
ApoI	RAATTY	3 cut(s)	46, 584, 992
AspLEI	GCGC	1 cut(s)	436
AspS9I	GGNCC	4 cut(s)	463, 464, 577, 803
AsuHPI	GGTGA	1 cut(s)	1064
AvaII	GGWCC	1 cut(s)	803
BaeGI	GKGCMC	1 cut(s)	467
BaeI	ACNNNNGTAYC	2 cut(s)	186, 219
BanII	GRGCYC	1 cut(s)	467
BbsI	GAAGAC	1 cut(s)	1200
Bbv12I	GWGCWC	1 cut(s)	597
BbvCI	CCTCAGC	1 cut(s)	117
BbvI	GCAGC	3 cut(s)	460, 518, 542
BccI	CCATC	8 cut(s)	103, 571, 682, 689, 701, 905, 982, 1043
BceAI	ACGGC	1 cut(s)	221
BcgI	CGANNNNNNTGC	2 cut(s)	761, 795
BciT130I	CCWGG	3 cut(s)	460, 513, 816
BciVI	GTATCC	1 cut(s)	1072
BclI	TGATCA	2 cut(s)	168, 280
BcoDI	GTCTC	3 cut(s)	62, 404, 1212
BfaI	CTAG	3 cut(s)	54, 903, 1086
BfmI	CTRYAG	1 cut(s)	741
BfoI	RGCGCY	1 cut(s)	437
BfuI	GTATCC	1 cut(s)	1072
BisI	GCNGC	3 cut(s)	474, 507, 531
BlsI	GCNGC	3 cut(s)	475, 508, 532
Bme1390I	CCNGG	3 cut(s)	460, 513, 816
Bme18I	GGWCC	1 cut(s)	803
BmgT120I	GGNCC	4 cut(s)	463, 464, 577, 803
BmiI	GGNNCC	4 cut(s)	123, 464, 465, 579
BmrFI	CCNGG	3 cut(s)	460, 513, 816
BmrI	ACTGGG	1 cut(s)	380
BmsI	GCATC	2 cut(s)	334, 1187
BmuI	ACTGGG	1 cut(s)	380
BpiI	GAAGAC	1 cut(s)	1200
BpmI	CTGGAG	1 cut(s)	44
Bpu10I	CCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	476
BsaBI	GATNNNNATC	1 cut(s)	185
BsaI	GGTCTC	1 cut(s)	1212
BsaJI	CCNNGG	4 cut(s)	438, 459, 942, 1188
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse1I	ACTGG	2 cut(s)	386, 805
Bse3DI	GCAATG	2 cut(s)	550, 1228
Bse8I	GATNNNNATC	1 cut(s)	185
BseBI	CCWGG	3 cut(s)	460, 513, 816
BseDI	CCNNGG	4 cut(s)	438, 459, 942, 1188
BseGI	GGATG	5 cut(s)	283, 349, 455, 811, 881
BseJI	GATNNNNATC	1 cut(s)	185
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMI	GCAATG	2 cut(s)	550, 1228
BseMII	CTCAG	4 cut(s)	44, 108, 612, 1162
BseNI	ACTGG	2 cut(s)	386, 805
BseSI	GKGCMC	1 cut(s)	467
BseXI	GCAGC	3 cut(s)	460, 518, 542
Bsh1236I	CGCG	1 cut(s)	329
Bsh1285I	CGRYCG	1 cut(s)	1074
BshFI	GGCC	3 cut(s)	236, 465, 578
BsiEI	CGRYCG	1 cut(s)	1074
BsiHKAI	GWGCWC	1 cut(s)	597
BslFI	GGGAC	1 cut(s)	616
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	3 cut(s)	62, 404, 1212
BsmFI	GGGAC	1 cut(s)	616
BsnI	GGCC	3 cut(s)	236, 465, 578
Bso31I	GGTCTC	1 cut(s)	1212
Bsp120I	GGGCCC	1 cut(s)	463
Bsp1286I	GDGCHC	2 cut(s)	467, 597
Bsp143I	GATC	5 cut(s)	168, 280, 330, 686, 1071
BspACI	CCGC	5 cut(s)	252, 327, 782, 806, 1176
BspANI	GGCC	3 cut(s)	236, 465, 578
BspCNI	CTCAG	4 cut(s)	43, 109, 611, 1161
BspFNI	CGCG	1 cut(s)	329
BspHI	TCATGA	1 cut(s)	696
BspLI	GGNNCC	4 cut(s)	123, 464, 465, 579
BspTNI	GGTCTC	1 cut(s)	1212
BsrDI	GCAATG	2 cut(s)	550, 1228
BsrI	ACTGG	2 cut(s)	386, 805
BssECI	CCNNGG	4 cut(s)	438, 459, 942, 1188
BssMI	GATC	5 cut(s)	168, 280, 330, 686, 1071
BssT1I	CCWWGG	2 cut(s)	942, 1188
Bst2UI	CCWGG	3 cut(s)	460, 513, 816
Bst4CI	ACNGT	4 cut(s)	415, 442, 646, 796
Bst6I	CTCTTC	2 cut(s)	236, 1174
BstAPI	GCANNNNNTGC	2 cut(s)	98, 320
BstC8I	GCNNGC	2 cut(s)	616, 928
BstDEI	CTNAG	5 cut(s)	30, 117, 598, 1094, 1148
BstDSI	CCRYGG	1 cut(s)	438
BstF5I	GGATG	5 cut(s)	283, 349, 455, 811, 881
BstFNI	CGCG	1 cut(s)	329
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	5 cut(s)	171, 283, 333, 689, 1074
BstMAI	GTCTC	3 cut(s)	62, 404, 1212
BstMBI	GATC	5 cut(s)	168, 280, 330, 686, 1071
BstMCI	CGRYCG	1 cut(s)	1074
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 107, 320, 908
BstNI	CCWGG	3 cut(s)	460, 513, 816
BstNSI	RCATGY	3 cut(s)	618, 626, 1201
BstSCI	CCNGG	3 cut(s)	458, 511, 814
BstSFI	CTRYAG	1 cut(s)	741
BstSLI	GKGCMC	1 cut(s)	467
BstUI	CGCG	1 cut(s)	329
BstV1I	GCAGC	3 cut(s)	460, 518, 542
BstV2I	GAAGAC	1 cut(s)	1200
BsuI	GTATCC	1 cut(s)	1072
BsuRI	GGCC	3 cut(s)	236, 465, 578
BtgI	CCRYGG	1 cut(s)	438
BtgZI	GCGATG	1 cut(s)	883
BtsCI	GGATG	5 cut(s)	283, 349, 455, 811, 881
BtsIMutI	CAGTG	1 cut(s)	80
Cac8I	GCNNGC	2 cut(s)	616, 928
CaiI	CAGNNNCTG	5 cut(s)	116, 320, 413, 512, 800
CciI	TCATGA	1 cut(s)	696
CfoI	GCGC	1 cut(s)	436
Cfr13I	GGNCC	4 cut(s)	463, 464, 577, 803
CseI	GACGC	2 cut(s)	122, 1087
Csp6I	GTAC	2 cut(s)	76, 203
CviAII	CATG	7 cut(s)	550, 615, 623, 666, 697, 1198, 1215
CviQI	GTAC	2 cut(s)	76, 203
DdeI	CTNAG	5 cut(s)	30, 117, 598, 1094, 1148
DpnI	GATC	5 cut(s)	170, 282, 332, 688, 1073
DpnII	GATC	5 cut(s)	168, 280, 330, 686, 1071
DraI	TTTAAA	1 cut(s)	339
Eam1104I	CTCTTC	2 cut(s)	236, 1174
EarI	CTCTTC	2 cut(s)	236, 1174
EciI	GGCGGA	1 cut(s)	267
Eco130I	CCWWGG	2 cut(s)	942, 1188
Eco24I	GRGCYC	1 cut(s)	467
Eco31I	GGTCTC	1 cut(s)	1212
Eco47I	GGWCC	1 cut(s)	803
Eco57I	CTGAAG	1 cut(s)	453
EcoO109I	RGGNCCY	3 cut(s)	463, 464, 577
EcoRII	CCWGG	3 cut(s)	458, 511, 814
EcoT14I	CCWWGG	2 cut(s)	942, 1188
EcoT38I	GRGCYC	1 cut(s)	467
ErhI	CCWWGG	2 cut(s)	942, 1188
FaeI	CATG	7 cut(s)	553, 618, 626, 669, 700, 1201, 1218
FaqI	GGGAC	1 cut(s)	616
FatI	CATG	7 cut(s)	549, 614, 622, 665, 696, 1197, 1214
FauI	CCCGC	1 cut(s)	775
FauNDI	CATATG	1 cut(s)	307
FbaI	TGATCA	2 cut(s)	168, 280
Fnu4HI	GCNGC	3 cut(s)	474, 507, 531
FokI	GGATG	5 cut(s)	290, 356, 442, 798, 868
FriOI	GRGCYC	1 cut(s)	467
Fsp4HI	GCNGC	3 cut(s)	474, 507, 531
FspBI	CTAG	3 cut(s)	54, 903, 1086
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	3 cut(s)	474, 507, 531
GsuI	CTGGAG	1 cut(s)	44
HaeII	RGCGCY	1 cut(s)	437
HaeIII	GGCC	3 cut(s)	236, 465, 578
HgaI	GACGC	2 cut(s)	122, 1087
HhaI	GCGC	1 cut(s)	436
Hin1II	CATG	7 cut(s)	553, 618, 626, 669, 700, 1201, 1218
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HinfI	GANTC	6 cut(s)	26, 244, 670, 746, 938, 1108
HphI	GGTGA	1 cut(s)	1064
Hpy166II	GTNNAC	2 cut(s)	76, 520
Hpy188I	TCNGA	2 cut(s)	686, 1241
Hpy188III	TCNNGA	5 cut(s)	61, 289, 567, 697, 1112
Hpy8I	GTNNAC	2 cut(s)	76, 520
HpyAV	CCTTC	3 cut(s)	32, 477, 1021
HpyCH4III	ACNGT	4 cut(s)	415, 442, 646, 796
HpyCH4V	TGCA	7 cut(s)	92, 323, 392, 446, 506, 530, 1043
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 107, 320, 908
HpyF3I	CTNAG	5 cut(s)	30, 117, 598, 1094, 1148
Hsp92II	CATG	7 cut(s)	553, 618, 626, 669, 700, 1201, 1218
HspAI	GCGC	1 cut(s)	434
Ksp22I	TGATCA	2 cut(s)	168, 280
Kzo9I	GATC	5 cut(s)	168, 280, 330, 686, 1071
LmnI	GCTCC	4 cut(s)	311, 514, 916, 1218
Lsp1109I	GCAGC	3 cut(s)	460, 518, 542
LweI	GCATC	2 cut(s)	334, 1187
MaeI	CTAG	3 cut(s)	54, 903, 1086
MaeIII	GTNAC	5 cut(s)	415, 556, 790, 796, 1030
MalI	GATC	5 cut(s)	170, 282, 332, 688, 1073
MboI	GATC	5 cut(s)	168, 280, 330, 686, 1071
MboII	GAAGA	4 cut(s)	253, 349, 1161, 1205
MhlI	GDGCHC	2 cut(s)	467, 597
MluCI	AATT	7 cut(s)	46, 228, 264, 584, 721, 984, 992
MlyI	GAGTC	3 cut(s)	253, 679, 932
MmeI	TCCRAC	1 cut(s)	984
MnlI	CCTC	5 cut(s)	112, 226, 568, 869, 1082
MseI	TTAA	2 cut(s)	270, 338
MspA1I	CMGCKG	1 cut(s)	473
MspR9I	CCNGG	3 cut(s)	460, 513, 816
MvaI	CCWGG	3 cut(s)	460, 513, 816
MvnI	CGCG	1 cut(s)	329
MwoI	GCNNNNNNNGC	4 cut(s)	98, 107, 320, 908
NdeI	CATATG	1 cut(s)	307
NdeII	GATC	5 cut(s)	168, 280, 330, 686, 1071
NlaIII	CATG	7 cut(s)	553, 618, 626, 669, 700, 1201, 1218
NlaIV	GGNNCC	4 cut(s)	123, 464, 465, 579
NmuCI	GTSAC	1 cut(s)	415
NspI	RCATGY	3 cut(s)	618, 626, 1201
PaeI	GCATGC	1 cut(s)	618
PagI	TCATGA	1 cut(s)	696
PciI	ACATGT	2 cut(s)	622, 1197
PfeI	GAWTC	3 cut(s)	26, 746, 1108
PkrI	GCNGC	3 cut(s)	475, 508, 532
Ple19I	CGATCG	1 cut(s)	1074
PleI	GAGTC	3 cut(s)	252, 678, 932
PpsI	GAGTC	3 cut(s)	252, 678, 932
PscI	ACATGT	2 cut(s)	622, 1197
Psp6I	CCWGG	3 cut(s)	458, 511, 814
PspGI	CCWGG	3 cut(s)	458, 511, 814
PspN4I	GGNNCC	4 cut(s)	123, 464, 465, 579
PspOMI	GGGCCC	1 cut(s)	463
PspPI	GGNCC	4 cut(s)	463, 464, 577, 803
PstNI	CAGNNNCTG	5 cut(s)	116, 320, 413, 512, 800
PvuI	CGATCG	1 cut(s)	1074
PvuII	CAGCTG	1 cut(s)	473
RsaI	GTAC	2 cut(s)	77, 204
RsaNI	GTAC	2 cut(s)	76, 203
SaqAI	TTAA	2 cut(s)	270, 338
SatI	GCNGC	3 cut(s)	474, 507, 531
Sau3AI	GATC	5 cut(s)	168, 280, 330, 686, 1071
Sau96I	GGNCC	4 cut(s)	463, 464, 577, 803
SchI	GAGTC	3 cut(s)	253, 679, 932
ScrFI	CCNGG	3 cut(s)	460, 513, 816
SduI	GDGCHC	2 cut(s)	467, 597
SfaNI	GCATC	2 cut(s)	334, 1187
SfcI	CTRYAG	1 cut(s)	741
SinI	GGWCC	1 cut(s)	803
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
SphI	GCATGC	1 cut(s)	618
Sse9I	AATT	7 cut(s)	46, 228, 264, 584, 721, 984, 992
SsiI	CCGC	5 cut(s)	252, 327, 782, 806, 1176
SspMI	CTAG	3 cut(s)	54, 903, 1086
StyD4I	CCNGG	3 cut(s)	458, 511, 814
StyI	CCWWGG	2 cut(s)	942, 1188
TaaI	ACNGT	4 cut(s)	415, 442, 646, 796
TaqI	TCGA	1 cut(s)	712
TasI	AATT	7 cut(s)	46, 228, 264, 584, 721, 984, 992
TfiI	GAWTC	3 cut(s)	26, 746, 1108
Tru1I	TTAA	2 cut(s)	270, 338
Tru9I	TTAA	2 cut(s)	270, 338
TscAI	CASTG	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	3 cut(s)	473, 506, 530
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	3 cut(s)	141, 444, 843
TspRI	CASTG	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	803
XapI	RAATTY	3 cut(s)	46, 584, 992
XceI	RCATGY	3 cut(s)	618, 626, 1201
XspI	CTAG	3 cut(s)	54, 903, 1086

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.