Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008647

Physical Location & Seq

Genomic Coordinates Forward (+)

2675118 .. 2675957

Gene Structure 840 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41893

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCACAGCAGAGGGTTGCTATCGATCGGCAATGACACGGCGGTTACTCCAGCTGGAAAAGAGGCCCCAAAATTCAATGTGCTCTCAGGGACTTCAATGGCATGCCCACATGTTTCTGGGATAGCAGCCACTGTCAAATCTCAAAACCCCACATGGAGTCCATCAGCCATCAGATCAGCCATCATGACAACAGCAACTCGAACAAACAATTTGAAAACCCCAATCACTACAGATTCAAGTTCAATAGCCACACCATACGATTATGGTGCGGGGGAAGTAACAGTAACTGGACCGCTACATCCAGGTCTGGTATATGAAACTGACACCATTGACTACTTGAGCTACCTCTGCTATTATGGGTTTGATACATCCAAACTCAAAACCATCGCTAGAACTGCTCCAATAGGTTTTGCTTGCCCCAAAGACTCCAAGGCTGATTACATATCCAACATCGACTACCCATCAATAGCAATTTCCAAATTCATTGGAAAAGAAAGCAGGAAGGTTACAAATGTTGCAGGAGATGGTGAAGTGGTTTTCACAGCGATTGTGGATACACCTAGAGGTCTAAGCGTCAAAGTGATTCCTGATAAACTACATTTTTCAATGAACAACCAGAAGCTCAGTTATCAAATGGTTTTCTCTTCAACCACATCTGTTCCCAAGGAAGACATGTTTGGGTCTCTTACATGGAGCAATGGAAAGTATAAAGTCCGAAGTCCAGTTGTTGTAAGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0010033 GO:0010037 GO:0016787 GO:0017171 GO:0019538 GO:0030312 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0042221 GO:0042493 GO:0043170 GO:0043900 GO:0043901 GO:0044238 GO:0044464 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0070011 GO:0071704 GO:0071944 GO:0072347 GO:0080134 GO:0140096 GO:1900424 GO:1900425 GO:1901564 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

246

Amino Acids

26.4

Weight (kDa)

8.99

Isoelectric Point (pI)

23.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S8	PF00082	22 - 73	2.4e-13	Subtilase family
fn3_6	PF17766	151 - 244	7.5e-22	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20150 AT1G20160 AT1G20160 AT1G20160
fragaria_vesca	FvH4_2g38090
malus_domestica	MD08G1009400.v1.1
prunus_persica	Prupe.1G361300_v2.0.a1
pyrus_communis	pycom08g00790 pycom15g00680 pycom15g00690
rosa_chinensis	RchiOBHm_Chr3g0451701 RchiOBHm_Chr6g0303461
rosa_laevigata	RLG00000011082
rosa_multiflora	Rmu_ssc0000114.1_g000050
rosa_roxburghii	Rroxscaffold_7G00164720 Rroxscaffold_7G00164730
rosa_rugosa	Rorug06G0321400 Rorug06G0321500
rosa_samantha	Rh6AG436000 Rh6BG467600 Rh6CG447900 Rh6DG434600
rosa_wichuraiana	Rw6G037730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	41, 269, 293
AcsI	RAATTY	2 cut(s)	71, 479
AflIII	ACRYGT	2 cut(s)	109, 672
AgsI	TTSAA	7 cut(s)	76, 96, 214, 237, 243, 606, 648
AjnI	CCWGG	1 cut(s)	301
AjuI	GAANNNNNNNTTGG	2 cut(s)	660, 692
AluBI	AGCT	3 cut(s)	53, 342, 622
AluI	AGCT	3 cut(s)	53, 342, 622
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	687
AlwNI	CAGNNNCTG	2 cut(s)	131, 287
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	2 cut(s)	71, 479
AspS9I	GGNCC	2 cut(s)	64, 290
AsuHPI	GGTGA	1 cut(s)	539
AvaII	GGWCC	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	675
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	6 cut(s)	169, 176, 188, 392, 469, 518
BceAI	ACGGC	1 cut(s)	54
BcgI	CGANNNNNNTGC	2 cut(s)	248, 282
BciT130I	CCWGG	1 cut(s)	303
BciVI	GTATCC	1 cut(s)	547
BcoDI	GTCTC	1 cut(s)	687
BfaI	CTAG	2 cut(s)	390, 561
BfmI	CTRYAG	1 cut(s)	228
BfuI	GTATCC	1 cut(s)	547
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	303
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	2 cut(s)	64, 290
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	303
BpiI	GAAGAC	1 cut(s)	675
BpmI	CTGGAG	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	358
Bsa29I	ATCGAT	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	687
BsaJI	CCNNGG	2 cut(s)	429, 663
Bse1I	ACTGG	2 cut(s)	292, 722
Bse3DI	GCAATG	2 cut(s)	37, 703
BseBI	CCWGG	1 cut(s)	303
BseCI	ATCGAT	1 cut(s)	23
BseDI	CCNNGG	2 cut(s)	429, 663
BseGI	GGATG	2 cut(s)	298, 368
BseMI	GCAATG	2 cut(s)	37, 703
BseMII	CTCAG	2 cut(s)	99, 637
BseNI	ACTGG	2 cut(s)	292, 722
BseXI	GCAGC	1 cut(s)	137
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	65
BshVI	ATCGAT	1 cut(s)	23
BsiEI	CGRYCG	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	687
BsmFI	GGGAC	1 cut(s)	103
BsnI	GGCC	1 cut(s)	65
Bso31I	GGTCTC	1 cut(s)	687
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	24, 173
BspACI	CCGC	3 cut(s)	41, 269, 293
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	2 cut(s)	98, 636
BspDI	ATCGAT	1 cut(s)	23
BspHI	TCATGA	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	66
BspTNI	GGTCTC	1 cut(s)	687
BsrDI	GCAATG	2 cut(s)	37, 703
BsrI	ACTGG	2 cut(s)	292, 722
BssECI	CCNNGG	2 cut(s)	429, 663
BssMI	GATC	2 cut(s)	24, 173
BssT1I	CCWWGG	2 cut(s)	429, 663
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	2 cut(s)	133, 283
Bst6I	CTCTTC	1 cut(s)	649
BstC8I	GCNNGC	2 cut(s)	103, 415
BstDEI	CTNAG	3 cut(s)	85, 569, 623
BstF5I	GGATG	2 cut(s)	298, 368
BstKTI	GATC	2 cut(s)	27, 176
BstMAI	GTCTC	1 cut(s)	687
BstMBI	GATC	2 cut(s)	24, 173
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	2 cut(s)	348, 395
BstNI	CCWGG	1 cut(s)	303
BstNSI	RCATGY	3 cut(s)	105, 113, 676
BstSCI	CCNGG	1 cut(s)	301
BstSFI	CTRYAG	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	137
BstV2I	GAAGAC	1 cut(s)	675
Bsu15I	ATCGAT	1 cut(s)	23
BsuI	GTATCC	1 cut(s)	547
BsuRI	GGCC	1 cut(s)	65
BsuTUI	ATCGAT	1 cut(s)	23
BtgZI	GCGATG	1 cut(s)	370
BtsCI	GGATG	2 cut(s)	298, 368
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	2 cut(s)	103, 415
CaiI	CAGNNNCTG	2 cut(s)	131, 287
CciI	TCATGA	1 cut(s)	183
Cfr13I	GGNCC	2 cut(s)	64, 290
ClaI	ATCGAT	1 cut(s)	23
CseI	GACGC	1 cut(s)	562
CviAII	CATG	6 cut(s)	102, 110, 153, 184, 673, 690
CviJI	RGCY	9 cut(s)	53, 65, 128, 167, 179, 248, 342, 434, 622
CviKI_1	RGCY	9 cut(s)	53, 65, 128, 167, 179, 248, 342, 434, 622
DdeI	CTNAG	3 cut(s)	85, 569, 623
DpnI	GATC	2 cut(s)	26, 175
DpnII	GATC	2 cut(s)	24, 173
Eam1104I	CTCTTC	1 cut(s)	649
EarI	CTCTTC	1 cut(s)	649
Eco130I	CCWWGG	2 cut(s)	429, 663
Eco31I	GGTCTC	1 cut(s)	687
Eco47I	GGWCC	1 cut(s)	290
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	301
EcoT14I	CCWWGG	2 cut(s)	429, 663
ErhI	CCWWGG	2 cut(s)	429, 663
FaeI	CATG	6 cut(s)	105, 113, 156, 187, 676, 693
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	6 cut(s)	101, 109, 152, 183, 672, 689
FauI	CCCGC	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	2 cut(s)	285, 355
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	2 cut(s)	390, 561
GluI	GCNGC	1 cut(s)	126
GsuI	CTGGAG	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	65
HgaI	GACGC	1 cut(s)	562
Hin1II	CATG	6 cut(s)	105, 113, 156, 187, 676, 693
HinfI	GANTC	4 cut(s)	157, 233, 425, 583
HphI	GGTGA	1 cut(s)	539
Hpy188I	TCNGA	2 cut(s)	173, 716
Hpy188III	TCNNGA	2 cut(s)	184, 587
HpyAV	CCTTC	1 cut(s)	496
HpyCH4III	ACNGT	2 cut(s)	133, 283
HpyCH4V	TGCA	2 cut(s)	4, 518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	348, 395
HpyF3I	CTNAG	3 cut(s)	85, 569, 623
Hsp92II	CATG	6 cut(s)	105, 113, 156, 187, 676, 693
Kzo9I	GATC	2 cut(s)	24, 173
LmnI	GCTCC	2 cut(s)	403, 693
Lsp1109I	GCAGC	1 cut(s)	137
MaeI	CTAG	2 cut(s)	390, 561
MaeIII	GTNAC	4 cut(s)	43, 277, 283, 505
MalI	GATC	2 cut(s)	26, 175
MboI	GATC	2 cut(s)	24, 173
MboII	GAAGA	2 cut(s)	636, 680
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	4 cut(s)	71, 208, 471, 479
MlyI	GAGTC	2 cut(s)	166, 419
MmeI	TCCRAC	1 cut(s)	471
MnlI	CCTC	4 cut(s)	5, 55, 356, 557
MspA1I	CMGCKG	1 cut(s)	53
MspR9I	CCNGG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	2 cut(s)	348, 395
NdeII	GATC	2 cut(s)	24, 173
NlaIII	CATG	6 cut(s)	105, 113, 156, 187, 676, 693
NlaIV	GGNNCC	1 cut(s)	66
NspI	RCATGY	3 cut(s)	105, 113, 676
PaeI	GCATGC	1 cut(s)	105
PagI	TCATGA	1 cut(s)	183
PciI	ACATGT	2 cut(s)	109, 672
PfeI	GAWTC	2 cut(s)	233, 583
PkrI	GCNGC	1 cut(s)	127
Ple19I	CGATCG	1 cut(s)	27
PleI	GAGTC	2 cut(s)	165, 419
PpsI	GAGTC	2 cut(s)	165, 419
PscI	ACATGT	2 cut(s)	109, 672
Psp6I	CCWGG	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	2 cut(s)	64, 290
PstNI	CAGNNNCTG	2 cut(s)	131, 287
PvuI	CGATCG	1 cut(s)	27
PvuII	CAGCTG	1 cut(s)	53
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	2 cut(s)	24, 173
Sau96I	GGNCC	2 cut(s)	64, 290
SchI	GAGTC	2 cut(s)	166, 419
ScrFI	CCNGG	1 cut(s)	303
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	9 cut(s)	55, 307, 344, 348, 409, 507, 562, 568, 624
SfcI	CTRYAG	1 cut(s)	228
SinI	GGWCC	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
SphI	GCATGC	1 cut(s)	105
Sse9I	AATT	4 cut(s)	71, 208, 471, 479
SsiI	CCGC	3 cut(s)	41, 269, 293
SspMI	CTAG	2 cut(s)	390, 561
StyD4I	CCNGG	1 cut(s)	301
StyI	CCWWGG	2 cut(s)	429, 663
TaaI	ACNGT	2 cut(s)	133, 283
TaqI	TCGA	3 cut(s)	23, 199, 453
TasI	AATT	4 cut(s)	71, 208, 471, 479
TfiI	GAWTC	2 cut(s)	233, 583
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	3 cut(s)	330, 472, 623
TspRI	CASTG	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	290
XapI	RAATTY	2 cut(s)	71, 479
XceI	RCATGY	3 cut(s)	105, 113, 676
XspI	CTAG	2 cut(s)	390, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.