Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008647

Physical Location & Seq

Genomic Coordinates Forward (+)

387995 .. 388361

Gene Structure 367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g00690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGCATGCCCCCATGTTTCGGGGATAGCGGCCACTGTCAGATCTCAAAATCCAACATGGAGCCCCTCTGCGATCAGATCAGCGATCATCACCACAGCATCTCAAACAAACAATCTGGGAATCCCATTTACCACAGAGAAAAATTCTACAGCCACGCCGTATGATTATGGCGCAGGGGAAGTGACGACAACCGGACCCTTGCAACCAGGGCTGGTTTACGAAACCGAAACCGTTGACTACTTGAACCACCTGTGCTACTATGGCTACGACTTACCGACACTTAAAACCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0010033 GO:0010037 GO:0016787 GO:0017171 GO:0019538 GO:0030312 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0042221 GO:0042493 GO:0043170 GO:0043900 GO:0043901 GO:0044238 GO:0044464 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0070011 GO:0071704 GO:0071944 GO:0072347 GO:0080134 GO:0140096 GO:1900424 GO:1900425 GO:1901564 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

98

Amino Acids

10.43

Weight (kDa)

5.01

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20150 AT1G20160 AT1G20160 AT1G20160
fragaria_vesca	FvH4_2g38090
malus_domestica	MD08G1009400.v1.1
prunus_persica	Prupe.1G361300_v2.0.a1
pyrus_communis	pycom08g00790 pycom15g00680 pycom15g00690
rosa_chinensis	RchiOBHm_Chr3g0451701 RchiOBHm_Chr6g0303461
rosa_laevigata	RLG00000011082
rosa_multiflora	Rmu_ssc0000114.1_g000050
rosa_roxburghii	Rroxscaffold_7G00164720 Rroxscaffold_7G00164730
rosa_rugosa	Rorug06G0321400 Rorug06G0321500
rosa_samantha	Rh6AG436000 Rh6BG467600 Rh6CG447900 Rh6DG434600
rosa_wichuraiana	Rw6G037730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	29
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	142
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgsI	TTSAA	1 cut(s)	244
AjnI	CCWGG	1 cut(s)	205
AoxI	GGCC	1 cut(s)	30
ApoI	RAATTY	1 cut(s)	142
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	65
BceAI	ACGGC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	207
BfmI	CTRYAG	1 cut(s)	147
BglII	AGATCT	1 cut(s)	41
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	2 cut(s)	62, 196
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	206
BsaWI	WCCGGW	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	206
BseLI	CCNNNNNNNGG	1 cut(s)	19
BshFI	GGCC	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	19
BsnI	GGCC	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	4 cut(s)	41, 72, 77, 84
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	1 cut(s)	32
BspLI	GGNNCC	2 cut(s)	62, 196
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	4 cut(s)	41, 72, 77, 84
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	37, 232
BstC8I	GCNNGC	1 cut(s)	7
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	4 cut(s)	44, 75, 80, 87
BstMBI	GATC	4 cut(s)	41, 72, 77, 84
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 261
BstNI	CCWGG	1 cut(s)	207
BstNSI	RCATGY	1 cut(s)	9
BstSCI	CCNGG	1 cut(s)	205
BstSFI	CTRYAG	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	32
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	194
CviAII	CATG	3 cut(s)	6, 14, 57
CviJI	RGCY	5 cut(s)	32, 63, 152, 211, 264
CviKI_1	RGCY	5 cut(s)	32, 63, 152, 211, 264
DpnI	GATC	4 cut(s)	43, 74, 79, 86
DpnII	GATC	4 cut(s)	41, 72, 77, 84
EaeI	YGGCCR	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	205
EcoT38I	GRGCYC	1 cut(s)	65
FaeI	CATG	3 cut(s)	9, 17, 60
FaiI	YATR	6 cut(s)	7, 15, 58, 162, 168, 261
FatI	CATG	3 cut(s)	5, 13, 56
Fnu4HI	GCNGC	1 cut(s)	30
FriOI	GRGCYC	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	30
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	1 cut(s)	192
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	3 cut(s)	9, 17, 60
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	1 cut(s)	120
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	217, 235
Hpy188I	TCNGA	2 cut(s)	41, 77
Hpy8I	GTNNAC	2 cut(s)	217, 235
HpyCH4III	ACNGT	2 cut(s)	37, 232
HpyCH4V	TGCA	1 cut(s)	202
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 261
Hsp92II	CATG	3 cut(s)	9, 17, 60
HspAI	GCGC	1 cut(s)	171
Kzo9I	GATC	4 cut(s)	41, 72, 77, 84
LmnI	GCTCC	1 cut(s)	60
LpnPI	CCDG	7 cut(s)	101, 159, 192, 197, 205, 219, 263
LweI	GCATC	1 cut(s)	107
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	4 cut(s)	43, 74, 79, 86
MboI	GATC	4 cut(s)	41, 72, 77, 84
MflI	RGATCY	1 cut(s)	41
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	1 cut(s)	76
MseI	TTAA	1 cut(s)	282
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	2 cut(s)	208, 261
NdeII	GATC	4 cut(s)	41, 72, 77, 84
NlaIII	CATG	3 cut(s)	9, 17, 60
NlaIV	GGNNCC	2 cut(s)	62, 196
NmuCI	GTSAC	1 cut(s)	181
NspI	RCATGY	1 cut(s)	9
PaeI	GCATGC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	120
PkrI	GCNGC	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	2 cut(s)	62, 196
PspPI	GGNCC	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	4 cut(s)	41, 72, 77, 84
Sau96I	GGNCC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	1 cut(s)	252
SfaNI	GCATC	1 cut(s)	107
SfcI	CTRYAG	1 cut(s)	147
SinI	GGWCC	1 cut(s)	194
SphI	GCATGC	1 cut(s)	9
Sse9I	AATT	1 cut(s)	142
SsiI	CCGC	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	205
TaaI	ACNGT	2 cut(s)	37, 232
TasI	AATT	1 cut(s)	142
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	120
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	181
TspRI	CASTG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	194
XapI	RAATTY	1 cut(s)	142
XceI	RCATGY	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.