FvH4_2g39911

Deoxyuridine 5'-triphosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010464
Physical Location & Seq
Reverse (-)
28527613 .. 28528815
1203 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g39911.t2

Sequence Viewer

Length: 699 bp
ATGGCGAAGGTCATGATCAGAAAGATGGCGGGAACTCTGAACGGCATGGCGGGAATATATGGCGCCAAAATCCCTACAACATCGTCCCTCGCGCTCACCTCTCTATTTAAACCACCCCAATCTCCGCACCTCACTCTAAAACCCCTTCACTCCAAACACCCAAATCATCGCCGCAATTTTCTCAAAATGGCCGAGCAGCAAAACGGGAGCCACGAAGTCAAGGAGCCAGCTCCTAAGATCGCCAAGCTCCACCAGAACGGTGACGTTTCTGAGACGAATTACTTCCGGGTGAAGAAGCTCTCTGAAAAGGCCATTTTGCCCTCGCGGGGTTCTCCTCTCTCTGCTGGTTATGACCTCTCCAGCGCAACGGAGACGAAGATACCAGCAAGAGGAAAGGCCTTGGTCCCAACTGATCTGAGCATTGCAGTTCCTAAGGGGACCTATGCCCGAGTTGCGCCGAGATCAGGGCTGGCATTGAAGCACTCCATTGATGTGGGAGCGGGAGTGATTGATGCCGATTACAGAGGCCCGGTTGGGGTGATTCTGTTCAACCATTCCGATGTTGATTTTGAGGTCAAGGTTGGTGACAGGATTGCTCAGCTGATAATTGAGAAGATCATTACCCCTGATGTTATGGAGGTTGAGGATTTGGACTGCACTGTCAGAGGTGAAGGAGGGTTTGGTTCTACTGGCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000287 GO:0003674 GO:0003824 GO:0004170 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006220 GO:0006221 GO:0006226 GO:0006244 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009141 GO:0009143 GO:0009147 GO:0009149 GO:0009157 GO:0009162 GO:0009165 GO:0009166 GO:0009176 GO:0009177 GO:0009200 GO:0009204 GO:0009211 GO:0009213 GO:0009219 GO:0009221 GO:0009223 GO:0009262 GO:0009263 GO:0009264 GO:0009265 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042802 GO:0043167 GO:0043169 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046078 GO:0046080 GO:0046081 GO:0046385 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0046872 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0072529 GO:0090304 GO:0090407 GO:1901135 GO:1901136 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00240 ko00983 ko01100 map00240 map00983 map01100
Pfam Domains
Protein Families
dUTPase

Protein Analysis

233

Amino Acids

24.9

Weight (kDa)

9.45

Isoelectric Point (pI)

31.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dUTPase PF00692 103 - 151 2.4e-10 dUTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 659
AccB1I GGYRCC 1 cut(s) 62
AccBSI CCGCTC 1 cut(s) 500
AccII CGCG 2 cut(s) 92, 325
AciI CCGC 6 cut(s) 29, 50, 125, 172, 325, 500
AcoI YGGCCR 1 cut(s) 189
AcyI GRCGYC 1 cut(s) 63
AfiI CCNNNNNNNGG 4 cut(s) 326, 389, 464, 535
AgsI TTSAA 2 cut(s) 478, 550
AjuI GAANNNNNNNTTGG 2 cut(s) 663, 695
AluBI AGCT 4 cut(s) 230, 247, 298, 601
AluI AGCT 4 cut(s) 230, 247, 298, 601
Alw26I GTCTC 2 cut(s) 266, 365
Ama87I CYCGRG 1 cut(s) 447
AoxI GGCC 4 cut(s) 189, 309, 396, 526
ApeKI GCWGC 1 cut(s) 196
Asp700I GAANNNNTTC 1 cut(s) 281
AspLEI GCGC 4 cut(s) 65, 94, 365, 457
AspS9I GGNCC 3 cut(s) 403, 438, 527
AsuC2I CCSGG 2 cut(s) 287, 530
AsuHPI GGTGA 6 cut(s) 88, 272, 301, 550, 596, 680
AvaI CYCGRG 1 cut(s) 447
AvaII GGWCC 2 cut(s) 403, 438
AxyI CCTNAGG 1 cut(s) 432
BanI GGYRCC 1 cut(s) 62
BbvI GCAGC 1 cut(s) 208
BccI CCATC 1 cut(s) 19
BceAI ACGGC 1 cut(s) 58
BclI TGATCA 1 cut(s) 15
BcnI CCSGG 2 cut(s) 287, 530
BcoDI GTCTC 2 cut(s) 266, 365
BfoI RGCGCY 1 cut(s) 66
BisI GCNGC 2 cut(s) 172, 197
BlpI GCTNAGC 1 cut(s) 597
BlsI GCNGC 2 cut(s) 173, 198
Bme1390I CCNGG 2 cut(s) 287, 530
Bme18I GGWCC 2 cut(s) 403, 438
BmeT110I CYCGRG 1 cut(s) 447
BmgT120I GGNCC 3 cut(s) 403, 438, 527
BmiI GGNNCC 5 cut(s) 64, 209, 225, 405, 439
BmrFI CCNGG 2 cut(s) 287, 530
BmsI GCATC 1 cut(s) 502
BpmI CTGGAG 1 cut(s) 343
Bpu1102I GCTNAGC 1 cut(s) 597
BpuMI CCSGG 2 cut(s) 287, 530
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 399
BsaXI ACNNNNNCTCC 2 cut(s) 489, 519
Bsc4I CCNNNNNNNGG 4 cut(s) 326, 389, 464, 535
Bse1I ACTGG 1 cut(s) 694
Bse21I CCTNAGG 1 cut(s) 432
Bse3DI GCAATG 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 399
BseLI CCNNNNNNNGG 4 cut(s) 326, 389, 464, 535
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 3 cut(s) 261, 407, 611
BseNI ACTGG 1 cut(s) 694
BseRI GAGGAG 1 cut(s) 324
BseXI GCAGC 1 cut(s) 208
BsgI GTGCAG 1 cut(s) 640
Bsh1236I CGCG 2 cut(s) 92, 325
BshFI GGCC 4 cut(s) 191, 311, 398, 528
BshNI GGYRCC 1 cut(s) 62
BsiHKCI CYCGRG 1 cut(s) 447
BsiSI CCGG 2 cut(s) 286, 530
BslFI GGGAC 3 cut(s) 70, 389, 451
BslI CCNNNNNNNGG 4 cut(s) 326, 389, 464, 535
BsmAI GTCTC 2 cut(s) 266, 365
BsmBI CGTCTC 2 cut(s) 266, 365
BsmFI GGGAC 3 cut(s) 70, 389, 451
BsnI GGCC 4 cut(s) 191, 311, 398, 528
BsoBI CYCGRG 1 cut(s) 447
Bsp143I GATC 5 cut(s) 15, 237, 412, 461, 615
Bsp1720I GCTNAGC 1 cut(s) 597
BspACI CCGC 6 cut(s) 29, 50, 125, 172, 325, 500
BspANI GGCC 4 cut(s) 191, 311, 398, 528
BspCNI CTCAG 3 cut(s) 262, 408, 610
BspFNI CGCG 2 cut(s) 92, 325
BspHI TCATGA 1 cut(s) 12
BspLI GGNNCC 5 cut(s) 64, 209, 225, 405, 439
BspT107I GGYRCC 1 cut(s) 62
BsrBI CCGCTC 1 cut(s) 500
BsrDI GCAATG 1 cut(s) 420
BsrI ACTGG 1 cut(s) 694
BssECI CCNNGG 1 cut(s) 399
BssMI GATC 5 cut(s) 15, 237, 412, 461, 615
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 399
Bst4CI ACNGT 2 cut(s) 260, 661
BstACI GRCGYC 1 cut(s) 63
BstC8I GCNNGC 2 cut(s) 228, 471
BstDEI CTNAG 5 cut(s) 234, 270, 416, 432, 597
BstFNI CGCG 2 cut(s) 92, 325
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 4 cut(s) 65, 94, 365, 457
BstKTI GATC 5 cut(s) 18, 240, 415, 464, 618
BstMAI GTCTC 2 cut(s) 266, 365
BstMBI GATC 5 cut(s) 15, 237, 412, 461, 615
BstMWI GCNNNNNNNGC 1 cut(s) 452
BstSCI CCNGG 2 cut(s) 285, 528
BstUI CGCG 2 cut(s) 92, 325
BstV1I GCAGC 1 cut(s) 208
BstXI CCANNNNNNTGG 1 cut(s) 493
Bsu36I CCTNAGG 1 cut(s) 432
BsuRI GGCC 4 cut(s) 191, 311, 398, 528
BtgZI GCGATG 1 cut(s) 152
BtsIMutI CAGTG 1 cut(s) 657
Cac8I GCNNGC 2 cut(s) 228, 471
CciI TCATGA 1 cut(s) 12
CfoI GCGC 4 cut(s) 65, 94, 365, 457
Cfr13I GGNCC 3 cut(s) 403, 438, 527
CviAII CATG 2 cut(s) 13, 46
DdeI CTNAG 5 cut(s) 234, 270, 416, 432, 597
DinI GGCGCC 1 cut(s) 64
DpnI GATC 5 cut(s) 17, 239, 414, 463, 617
DpnII GATC 5 cut(s) 15, 237, 412, 461, 615
DraI TTTAAA 1 cut(s) 109
DrdI GACNNNNNNGTC 1 cut(s) 659
DseDI GACNNNNNNGTC 1 cut(s) 659
EaeI YGGCCR 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 399
Eco147I AGGCCT 1 cut(s) 398
Eco47I GGWCC 2 cut(s) 403, 438
Eco81I CCTNAGG 1 cut(s) 432
Eco88I CYCGRG 1 cut(s) 447
EcoO109I RGGNCCY 1 cut(s) 438
EcoT14I CCWWGG 1 cut(s) 399
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 399
Esp3I CGTCTC 2 cut(s) 266, 365
FaeI CATG 2 cut(s) 16, 49
FaiI YATR 7 cut(s) 14, 47, 58, 60, 351, 444, 635
FaqI GGGAC 3 cut(s) 70, 389, 451
FatI CATG 2 cut(s) 12, 45
FauI CCCGC 4 cut(s) 22, 43, 318, 493
FbaI TGATCA 1 cut(s) 15
Fnu4HI GCNGC 2 cut(s) 172, 197
Fsp4HI GCNGC 2 cut(s) 172, 197
GlaI GCGC 4 cut(s) 64, 93, 364, 456
GluI GCNGC 2 cut(s) 172, 197
GsuI CTGGAG 1 cut(s) 343
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 4 cut(s) 191, 311, 398, 528
HapII CCGG 2 cut(s) 286, 530
HhaI GCGC 4 cut(s) 65, 94, 365, 457
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 2 cut(s) 16, 49
Hin6I GCGC 4 cut(s) 63, 92, 363, 455
HinP1I GCGC 4 cut(s) 63, 92, 363, 455
HinfI GANTC 1 cut(s) 541
HpaII CCGG 2 cut(s) 286, 530
HphI GGTGA 6 cut(s) 88, 272, 301, 550, 596, 680
Hpy188I TCNGA 7 cut(s) 20, 39, 271, 304, 417, 559, 665
Hpy188III TCNNGA 1 cut(s) 13
HpyAV CCTTC 2 cut(s) 155, 665
HpyCH4III ACNGT 2 cut(s) 260, 661
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 2 cut(s) 425, 657
HpyF10VI GCNNNNNNNGC 1 cut(s) 452
HpyF3I CTNAG 5 cut(s) 234, 270, 416, 432, 597
HpySE526I ACGT 1 cut(s) 264
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 2 cut(s) 16, 49
HspAI GCGC 4 cut(s) 63, 92, 363, 455
KasI GGCGCC 1 cut(s) 62
Ksp22I TGATCA 1 cut(s) 15
Kzo9I GATC 5 cut(s) 15, 237, 412, 461, 615
LmnI GCTCC 5 cut(s) 207, 223, 235, 252, 497
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 1 cut(s) 502
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 2 cut(s) 260, 584
MalI GATC 5 cut(s) 17, 239, 414, 463, 617
MbiI CCGCTC 1 cut(s) 500
MboI GATC 5 cut(s) 15, 237, 412, 461, 615
MboII GAAGA 3 cut(s) 304, 388, 625
MluCI AATT 3 cut(s) 175, 277, 606
Mly113I GGCGCC 1 cut(s) 63
MroXI GAANNNNTTC 1 cut(s) 281
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 2 cut(s) 491, 558
MspA1I CMGCKG 1 cut(s) 601
MspI CCGG 2 cut(s) 286, 530
MspR9I CCNGG 2 cut(s) 287, 530
MvnI CGCG 2 cut(s) 92, 325
MwoI GCNNNNNNNGC 1 cut(s) 452
NarI GGCGCC 1 cut(s) 63
NciI CCSGG 2 cut(s) 287, 530
NdeII GATC 5 cut(s) 15, 237, 412, 461, 615
NlaIII CATG 2 cut(s) 16, 49
NlaIV GGNNCC 5 cut(s) 64, 209, 225, 405, 439
NmeAIII GCCGAG 2 cut(s) 217, 483
NmuCI GTSAC 2 cut(s) 260, 584
PagI TCATGA 1 cut(s) 12
PceI AGGCCT 1 cut(s) 398
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 1 cut(s) 541
PkrI GCNGC 2 cut(s) 173, 198
PluTI GGCGCC 1 cut(s) 66
PpuMI RGGWCCY 1 cut(s) 438
Psp5II RGGWCCY 1 cut(s) 438
PspN4I GGNNCC 5 cut(s) 64, 209, 225, 405, 439
PspPI GGNCC 3 cut(s) 403, 438, 527
PspPPI RGGWCCY 1 cut(s) 438
PvuII CAGCTG 1 cut(s) 601
RseI CAYNNNNRTG 2 cut(s) 491, 558
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 2 cut(s) 172, 197
Sau3AI GATC 5 cut(s) 15, 237, 412, 461, 615
Sau96I GGNCC 3 cut(s) 403, 438, 527
ScrFI CCNGG 2 cut(s) 287, 530
SfaNI GCATC 1 cut(s) 502
SfoI GGCGCC 1 cut(s) 64
SinI GGWCC 2 cut(s) 403, 438
SmiMI CAYNNNNRTG 2 cut(s) 491, 558
Sse9I AATT 3 cut(s) 175, 277, 606
SseBI AGGCCT 1 cut(s) 398
SsiI CCGC 6 cut(s) 29, 50, 125, 172, 325, 500
SspDI GGCGCC 1 cut(s) 62
StuI AGGCCT 1 cut(s) 398
StyD4I CCNGG 2 cut(s) 285, 528
StyI CCWWGG 1 cut(s) 399
TaaI ACNGT 2 cut(s) 260, 661
TaiI ACGT 1 cut(s) 267
TasI AATT 3 cut(s) 175, 277, 606
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 1 cut(s) 541
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 1 cut(s) 664
TseFI GTSAC 2 cut(s) 260, 584
TseI GCWGC 1 cut(s) 196
Tsp45I GTSAC 2 cut(s) 260, 584
TspGWI ACGGA 1 cut(s) 383
TspRI CASTG 1 cut(s) 664
VpaK11BI GGWCC 2 cut(s) 403, 438
XmnI GAANNNNTTC 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.