Prupe.1G380600_v2.0.a1

Deoxyuridine 5'-triphosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010464
Physical Location & Seq
Reverse (-)
34319190 .. 34320832
1643 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G380600.1

Sequence Viewer

Length: 762 bp
ATGATGCTGGAAGTGGTGCAGGAGAAAGGTGTGGAGAGGAGACCATTTACATGTCTGCGCACAACACTCGTAATTCGTACCTACATCACAATGGCGGGAAAACTTTTCATCACGCGGGAAACACCATTTTTGGCGGGACTTTCTCTATTTAAACGAACCCCGTCCTCCTATCTGCTCCTAAAACCCGGTATTTGCAAATACTCGCATCACCGCCGTCCTCTTTCTCAACTTCTCAGAATGGCCCCGCAAGACGTGCAGAACGGCAACCACGAAGTCAAGGAGCCAACTCCTAAGATCGCCAAGCTTCACGAAAACAGTGACGTTTCGGGAAACCCCACCTTTTTTTTCAGGGTGAAGAAGCTATCTGAGAAGGCCGTCTTGCCCTCGAGAGGCTCACCTCTCTCTGCAGGCTATGACCTCTCAAGTGCAACGGAGACGAAGGTACCGGCTAGAGGAAAAGCCCTGGTCCCAACTGATCTGAGCATTGCAGTCCCTGAAGGAACCTATGCAAGAATTGCGCCGCGGTCAGGGTTGGCCTGGAAGCACTCGATCAATGTGGGAGCGGGAGTCATAGATGCTGACTACAGGGGCTCAGTTGGGGTGATATTGTTCAACCATTCTGATGTTGATTTTGAAATCAAGGAGGGTGATAGGATTGCACAGCTGATCATTGAGAAGATCATCACCCCTGATGTTGTGGAGGTTGAGGATCTGGACTTGACCGCCAGGGGCAATGGCGGGTTCGGATCCACCGGTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000287 GO:0003674 GO:0003824 GO:0004170 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006220 GO:0006221 GO:0006226 GO:0006244 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009141 GO:0009143 GO:0009147 GO:0009149 GO:0009157 GO:0009162 GO:0009165 GO:0009166 GO:0009176 GO:0009177 GO:0009200 GO:0009204 GO:0009211 GO:0009213 GO:0009219 GO:0009221 GO:0009223 GO:0009262 GO:0009263 GO:0009264 GO:0009265 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042802 GO:0043167 GO:0043169 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046078 GO:0046080 GO:0046081 GO:0046385 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0046872 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0072529 GO:0090304 GO:0090407 GO:1901135 GO:1901136 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00240 ko00983 ko01100 map00240 map00983 map01100
Pfam Domains
Protein Families
dUTPase

Protein Analysis

254

Amino Acids

27.73

Weight (kDa)

9.3

Isoelectric Point (pI)

33.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 59
Acc65I GGTACC 1 cut(s) 442
AccB1I GGYRCC 1 cut(s) 442
AccBSI CCGCTC 1 cut(s) 563
AccII CGCG 2 cut(s) 115, 523
AclWI GGATC 3 cut(s) 717, 741, 754
AcuI CTGAAG 1 cut(s) 516
AfaI GTAC 2 cut(s) 79, 444
AfiI CCNNNNNNNGG 3 cut(s) 389, 452, 527
AflIII ACRYGT 1 cut(s) 50
AgeI ACCGGT 1 cut(s) 752
AgsI TTSAA 2 cut(s) 613, 635
AjiI CACGTC 1 cut(s) 253
AjnI CCWGG 3 cut(s) 462, 536, 725
AluBI AGCT 3 cut(s) 304, 361, 664
AluI AGCT 3 cut(s) 304, 361, 664
Alw26I GTCTC 2 cut(s) 34, 428
AlwI GGATC 3 cut(s) 717, 741, 754
AlwNI CAGNNNCTG 1 cut(s) 494
Ama87I CYCGRG 1 cut(s) 385
AoxI GGCC 3 cut(s) 240, 372, 534
AsiGI ACCGGT 1 cut(s) 752
Asp718I GGTACC 1 cut(s) 442
AspLEI GCGC 2 cut(s) 60, 520
AspS9I GGNCC 2 cut(s) 241, 466
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 6 cut(s) 200, 364, 387, 613, 659, 676
AvaI CYCGRG 1 cut(s) 385
AvaII GGWCC 1 cut(s) 466
BaeI ACNNNNGTAYC 2 cut(s) 426, 459
BamHI GGATCC 1 cut(s) 746
BanI GGYRCC 1 cut(s) 442
BanII GRGCYC 1 cut(s) 593
BceAI ACGGC 3 cut(s) 198, 277, 359
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BciT130I CCWGG 3 cut(s) 464, 538, 727
BclI TGATCA 1 cut(s) 666
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 2 cut(s) 34, 428
BfaI CTAG 2 cut(s) 450, 760
BfmI CTRYAG 2 cut(s) 405, 583
BisI GCNGC 1 cut(s) 521
BlsI GCNGC 1 cut(s) 522
Bme1390I CCNGG 4 cut(s) 186, 464, 538, 727
Bme18I GGWCC 1 cut(s) 466
BmeT110I CYCGRG 1 cut(s) 385
BmgBI CACGTC 1 cut(s) 253
BmgT120I GGNCC 2 cut(s) 241, 466
BmiI GGNNCC 6 cut(s) 243, 282, 444, 468, 502, 748
BmrFI CCNGG 4 cut(s) 186, 464, 538, 727
BmsI GCATC 2 cut(s) 214, 565
BpuEI CTTGAG 1 cut(s) 406
BpuMI CCSGG 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 34
BsaJI CCNNGG 3 cut(s) 462, 521, 726
BsaWI WCCGGW 1 cut(s) 752
BsaXI ACNNNNNCTCC 2 cut(s) 552, 582
Bsc4I CCNNNNNNNGG 3 cut(s) 389, 452, 527
Bse118I RCCGGY 2 cut(s) 445, 752
Bse3DI GCAATG 2 cut(s) 483, 739
BseBI CCWGG 3 cut(s) 464, 538, 727
BseDI CCNNGG 3 cut(s) 462, 521, 726
BseLI CCNNNNNNNGG 3 cut(s) 389, 452, 527
BseMI GCAATG 2 cut(s) 483, 739
BseMII CTCAG 4 cut(s) 247, 357, 470, 606
BseRI GAGGAG 1 cut(s) 52
BsgI GTGCAG 2 cut(s) 38, 275
Bsh1236I CGCG 2 cut(s) 115, 523
BshFI GGCC 3 cut(s) 242, 374, 536
BshNI GGYRCC 1 cut(s) 442
BshTI ACCGGT 1 cut(s) 752
BsiHKCI CYCGRG 1 cut(s) 385
BsiSI CCGG 3 cut(s) 186, 446, 753
BslFI GGGAC 3 cut(s) 150, 452, 476
BslI CCNNNNNNNGG 3 cut(s) 389, 452, 527
BsmAI GTCTC 2 cut(s) 34, 428
BsmBI CGTCTC 1 cut(s) 428
BsmFI GGGAC 3 cut(s) 150, 452, 476
BsnI GGCC 3 cut(s) 242, 374, 536
Bso31I GGTCTC 1 cut(s) 34
BsoBI CYCGRG 1 cut(s) 385
Bsp1286I GDGCHC 1 cut(s) 593
Bsp143I GATC 7 cut(s) 294, 475, 549, 666, 678, 709, 746
BspANI GGCC 3 cut(s) 242, 374, 536
BspCNI CTCAG 4 cut(s) 246, 358, 471, 605
BspFNI CGCG 2 cut(s) 115, 523
BspLI GGNNCC 6 cut(s) 243, 282, 444, 468, 502, 748
BspMAI CTGCAG 1 cut(s) 409
BspPI GGATC 3 cut(s) 717, 741, 754
BspT107I GGYRCC 1 cut(s) 442
BspTNI GGTCTC 1 cut(s) 34
BsrBI CCGCTC 1 cut(s) 563
BsrDI GCAATG 2 cut(s) 483, 739
BsrFI RCCGGY 2 cut(s) 445, 752
BssAI RCCGGY 2 cut(s) 445, 752
BssECI CCNNGG 3 cut(s) 462, 521, 726
BssMI GATC 7 cut(s) 294, 475, 549, 666, 678, 709, 746
Bst2UI CCWGG 3 cut(s) 464, 538, 727
Bst4CI ACNGT 1 cut(s) 317
BstAPI GCANNNNNTGC 2 cut(s) 253, 515
BstC8I GCNNGC 1 cut(s) 409
BstDEI CTNAG 5 cut(s) 233, 291, 366, 479, 592
BstDSI CCRYGG 1 cut(s) 521
BstFNI CGCG 2 cut(s) 115, 523
BstHHI GCGC 2 cut(s) 60, 520
BstKTI GATC 7 cut(s) 297, 478, 552, 669, 681, 712, 749
BstMAI GTCTC 2 cut(s) 34, 428
BstMBI GATC 7 cut(s) 294, 475, 549, 666, 678, 709, 746
BstMWI GCNNNNNNNGC 2 cut(s) 253, 515
BstNI CCWGG 3 cut(s) 464, 538, 727
BstNSI RCATGY 1 cut(s) 54
BstSCI CCNGG 4 cut(s) 184, 462, 536, 725
BstSFI CTRYAG 2 cut(s) 405, 583
BstUI CGCG 2 cut(s) 115, 523
BstX2I RGATCY 2 cut(s) 709, 746
BstYI RGATCY 2 cut(s) 709, 746
BsuRI GGCC 3 cut(s) 242, 374, 536
BtgI CCRYGG 1 cut(s) 521
BtrI CACGTC 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 322
Cac8I GCNNGC 1 cut(s) 409
CaiI CAGNNNCTG 1 cut(s) 494
CfoI GCGC 2 cut(s) 60, 520
Cfr10I RCCGGY 2 cut(s) 445, 752
Cfr13I GGNCC 2 cut(s) 241, 466
Cfr42I CCGCGG 1 cut(s) 524
Csp6I GTAC 2 cut(s) 78, 443
CspAI ACCGGT 1 cut(s) 752
CviAII CATG 1 cut(s) 51
CviQI GTAC 2 cut(s) 78, 443
DdeI CTNAG 5 cut(s) 233, 291, 366, 479, 592
DpnI GATC 7 cut(s) 296, 477, 551, 668, 680, 711, 748
DpnII GATC 7 cut(s) 294, 475, 549, 666, 678, 709, 746
DraI TTTAAA 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 593
Eco31I GGTCTC 1 cut(s) 34
Eco47I GGWCC 1 cut(s) 466
Eco57I CTGAAG 1 cut(s) 516
Eco88I CYCGRG 1 cut(s) 385
EcoRII CCWGG 3 cut(s) 462, 536, 725
EcoT38I GRGCYC 1 cut(s) 593
Esp3I CGTCTC 1 cut(s) 428
FaeI CATG 1 cut(s) 54
FaiI YATR 4 cut(s) 52, 414, 507, 572
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FaqI GGGAC 3 cut(s) 150, 452, 476
FatI CATG 1 cut(s) 50
FauI CCCGC 6 cut(s) 88, 108, 127, 252, 556, 731
FbaI TGATCA 1 cut(s) 666
Fnu4HI GCNGC 1 cut(s) 521
FriOI GRGCYC 1 cut(s) 593
Fsp4HI GCNGC 1 cut(s) 521
FspBI CTAG 2 cut(s) 450, 760
FspI TGCGCA 1 cut(s) 59
GlaI GCGC 2 cut(s) 59, 519
GluI GCNGC 1 cut(s) 521
HaeIII GGCC 3 cut(s) 242, 374, 536
HapII CCGG 3 cut(s) 186, 446, 753
HhaI GCGC 2 cut(s) 60, 520
Hin1II CATG 1 cut(s) 54
Hin6I GCGC 2 cut(s) 58, 518
HinP1I GCGC 2 cut(s) 58, 518
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 1 cut(s) 567
HpaII CCGG 3 cut(s) 186, 446, 753
HphI GGTGA 6 cut(s) 200, 364, 387, 613, 659, 676
Hpy188I TCNGA 5 cut(s) 236, 367, 480, 622, 746
Hpy188III TCNNGA 4 cut(s) 308, 327, 387, 713
HpyAV CCTTC 3 cut(s) 364, 433, 491
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4IV ACGT 2 cut(s) 252, 321
HpyCH4V TGCA 8 cut(s) 19, 195, 256, 407, 428, 488, 509, 659
HpyF10VI GCNNNNNNNGC 2 cut(s) 253, 515
HpyF3I CTNAG 5 cut(s) 233, 291, 366, 479, 592
HpySE526I ACGT 2 cut(s) 252, 321
Hsp92II CATG 1 cut(s) 54
HspAI GCGC 2 cut(s) 58, 518
KpnI GGTACC 1 cut(s) 446
Ksp22I TGATCA 1 cut(s) 666
KspI CCGCGG 1 cut(s) 524
Kzo9I GATC 7 cut(s) 294, 475, 549, 666, 678, 709, 746
LmnI GCTCC 3 cut(s) 180, 280, 560
LweI GCATC 2 cut(s) 214, 565
MaeI CTAG 2 cut(s) 450, 760
MaeII ACGT 2 cut(s) 252, 321
MaeIII GTNAC 1 cut(s) 317
MalI GATC 7 cut(s) 296, 477, 551, 668, 680, 711, 748
MbiI CCGCTC 1 cut(s) 563
MboI GATC 7 cut(s) 294, 475, 549, 666, 678, 709, 746
MboII GAAGA 2 cut(s) 367, 688
MflI RGATCY 2 cut(s) 709, 746
MhlI GDGCHC 1 cut(s) 593
MluCI AATT 2 cut(s) 72, 513
MlyI GAGTC 1 cut(s) 576
MseI TTAA 1 cut(s) 150
MslI CAYNNNNRTG 3 cut(s) 49, 89, 621
MspA1I CMGCKG 2 cut(s) 523, 664
MspI CCGG 3 cut(s) 186, 446, 753
MspR9I CCNGG 4 cut(s) 186, 464, 538, 727
MvaI CCWGG 3 cut(s) 464, 538, 727
MvnI CGCG 2 cut(s) 115, 523
MwoI GCNNNNNNNGC 2 cut(s) 253, 515
NciI CCSGG 1 cut(s) 186
NdeII GATC 7 cut(s) 294, 475, 549, 666, 678, 709, 746
NlaIII CATG 1 cut(s) 54
NlaIV GGNNCC 6 cut(s) 243, 282, 444, 468, 502, 748
NmuCI GTSAC 1 cut(s) 317
NsbI TGCGCA 1 cut(s) 59
NspI RCATGY 1 cut(s) 54
PaeR7I CTCGAG 1 cut(s) 385
PciI ACATGT 1 cut(s) 50
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PinAI ACCGGT 1 cut(s) 752
PkrI GCNGC 1 cut(s) 522
PleI GAGTC 1 cut(s) 575
PpsI GAGTC 1 cut(s) 575
PscI ACATGT 1 cut(s) 50
Psp6I CCWGG 3 cut(s) 462, 536, 725
PspGI CCWGG 3 cut(s) 462, 536, 725
PspN4I GGNNCC 6 cut(s) 243, 282, 444, 468, 502, 748
PspPI GGNCC 2 cut(s) 241, 466
PstI CTGCAG 1 cut(s) 409
PstNI CAGNNNCTG 1 cut(s) 494
PsuI RGATCY 2 cut(s) 709, 746
PvuII CAGCTG 1 cut(s) 664
RsaI GTAC 2 cut(s) 79, 444
RsaNI GTAC 2 cut(s) 78, 443
RseI CAYNNNNRTG 3 cut(s) 49, 89, 621
SacII CCGCGG 1 cut(s) 524
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 1 cut(s) 521
Sau3AI GATC 7 cut(s) 294, 475, 549, 666, 678, 709, 746
Sau96I GGNCC 2 cut(s) 241, 466
SchI GAGTC 1 cut(s) 576
ScrFI CCNGG 4 cut(s) 186, 464, 538, 727
SduI GDGCHC 1 cut(s) 593
SfaNI GCATC 2 cut(s) 214, 565
SfcI CTRYAG 2 cut(s) 405, 583
Sfr274I CTCGAG 1 cut(s) 385
Sfr303I CCGCGG 1 cut(s) 524
SgrAI CRCCGGYG 1 cut(s) 752
SgrBI CCGCGG 1 cut(s) 524
SinI GGWCC 1 cut(s) 466
SlaI CTCGAG 1 cut(s) 385
SmiMI CAYNNNNRTG 3 cut(s) 49, 89, 621
SmlI CTYRAG 2 cut(s) 385, 421
SmoI CTYRAG 2 cut(s) 385, 421
Sse9I AATT 2 cut(s) 72, 513
SspMI CTAG 2 cut(s) 450, 760
StyD4I CCNGG 4 cut(s) 184, 462, 536, 725
TaaI ACNGT 1 cut(s) 317
TaiI ACGT 2 cut(s) 255, 324
TaqI TCGA 2 cut(s) 386, 548
TasI AATT 2 cut(s) 72, 513
TauI GCSGC 1 cut(s) 523
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 1 cut(s) 322
TseFI GTSAC 1 cut(s) 317
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 1 cut(s) 97
TspGWI ACGGA 1 cut(s) 446
TspRI CASTG 1 cut(s) 322
VpaK11BI GGWCC 1 cut(s) 466
XceI RCATGY 1 cut(s) 54
XhoI CTCGAG 1 cut(s) 385
XspI CTAG 2 cut(s) 450, 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.