RLG00000018469

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0010464
Physical Location & Seq
Forward (+)
30311118 .. 30311734
617 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018469

Sequence Viewer

Length: 333 bp
ATGCCGGAGTGTTCAGTACGATATGGAAGAAGAGATCGATGCAAGGGTTGCCGGAGGAGAGGTCAGGGGTTTCAGGGTTGGCTTGTTGAGGTTGTTGAAATTGGCGACCATGGAATCGATGAAGGGGTTGGCAAAAGTGGCTCAGATATTTTCTTAGAGATCAAGGCGGGTGATAGGATTGCACAGTTGATAATAGAGAAGATCATCACCTCTAATATTATGGAGGCCTCTATTTATGGTTATGAAATTTCGTACTTTTGGGGATCAACCATTCGAGCAGGTGCTAGTTTAATGGAAGTGGATGAAATTGGGGACCCAAATCAGATGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.28

Weight (kDa)

5.14

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 269
Acc36I ACCTGC 1 cut(s) 269
AciI CCGC 1 cut(s) 167
AclWI GGATC 1 cut(s) 271
AcsI RAATTY 1 cut(s) 246
AfaI GTAC 2 cut(s) 18, 254
AgsI TTSAA 1 cut(s) 98
AlwI GGATC 1 cut(s) 271
AoxI GGCC 1 cut(s) 225
ApoI RAATTY 1 cut(s) 246
AspS9I GGNCC 1 cut(s) 313
AsuHPI GGTGA 2 cut(s) 182, 199
AvaII GGWCC 1 cut(s) 313
BfaI CTAG 1 cut(s) 285
BfuAI ACCTGC 1 cut(s) 269
Bme18I GGWCC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 2 cut(s) 314, 315
BmsI GCATC 2 cut(s) 29, 315
Bsa29I ATCGAT 2 cut(s) 37, 117
BsaJI CCNNGG 1 cut(s) 109
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
BseCI ATCGAT 2 cut(s) 37, 117
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 156
BseRI GAGGAG 1 cut(s) 70
BshFI GGCC 1 cut(s) 227
BshVI ATCGAT 2 cut(s) 37, 117
BsiSI CCGG 2 cut(s) 5, 52
BslFI GGGAC 1 cut(s) 326
BsmFI GGGAC 1 cut(s) 326
BsnI GGCC 1 cut(s) 227
Bsp143I GATC 4 cut(s) 34, 159, 201, 263
Bsp19I CCATGG 1 cut(s) 109
BspACI CCGC 1 cut(s) 167
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 1 cut(s) 155
BspDI ATCGAT 2 cut(s) 37, 117
BspLI GGNNCC 2 cut(s) 314, 315
BspMI ACCTGC 1 cut(s) 269
BspPI GGATC 1 cut(s) 271
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 4 cut(s) 34, 159, 201, 263
BssT1I CCWWGG 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 186
Bst6I CTCTTC 1 cut(s) 25
BstAPI GCANNNNNTGC 1 cut(s) 48
BstDEI CTNAG 2 cut(s) 142, 154
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 4 cut(s) 37, 162, 204, 266
BstMBI GATC 4 cut(s) 34, 159, 201, 263
BstMWI GCNNNNNNNGC 2 cut(s) 48, 138
Bsu15I ATCGAT 2 cut(s) 37, 117
BsuRI GGCC 1 cut(s) 227
BsuTUI ATCGAT 2 cut(s) 37, 117
BtgI CCRYGG 1 cut(s) 109
BtsCI GGATG 1 cut(s) 307
BveI ACCTGC 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 313
ClaI ATCGAT 2 cut(s) 37, 117
Csp6I GTAC 2 cut(s) 17, 253
CviAII CATG 1 cut(s) 110
CviJI RGCY 3 cut(s) 82, 141, 227
CviKI_1 RGCY 3 cut(s) 82, 141, 227
CviQI GTAC 2 cut(s) 17, 253
DdeI CTNAG 2 cut(s) 142, 154
DpnI GATC 4 cut(s) 36, 161, 203, 265
DpnII GATC 4 cut(s) 34, 159, 201, 263
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 109
Eco147I AGGCCT 1 cut(s) 227
Eco47I GGWCC 1 cut(s) 313
EcoO109I RGGNCCY 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 109
EcoT22I ATGCAT 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 1 cut(s) 113
FaiI YATR 5 cut(s) 24, 111, 221, 237, 243
FaqI GGGAC 1 cut(s) 326
FatI CATG 1 cut(s) 109
FauI CCCGC 1 cut(s) 160
FokI GGATG 1 cut(s) 314
FspBI CTAG 1 cut(s) 285
HaeIII GGCC 1 cut(s) 227
HapII CCGG 2 cut(s) 5, 52
Hin1II CATG 1 cut(s) 113
HinfI GANTC 1 cut(s) 114
HpaII CCGG 2 cut(s) 5, 52
HphI GGTGA 2 cut(s) 182, 199
Hpy188I TCNGA 2 cut(s) 145, 324
HpyAV CCTTC 1 cut(s) 116
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4V TGCA 3 cut(s) 42, 182, 328
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 138
HpyF3I CTNAG 2 cut(s) 142, 154
Hsp92II CATG 1 cut(s) 113
KflI GGGWCCC 1 cut(s) 313
Kzo9I GATC 4 cut(s) 34, 159, 201, 263
LpnPI CCDG 5 cut(s) 18, 50, 59, 65, 264
LweI GCATC 2 cut(s) 29, 315
MaeI CTAG 1 cut(s) 285
MalI GATC 4 cut(s) 36, 161, 203, 265
MboI GATC 4 cut(s) 34, 159, 201, 263
MboII GAAGA 3 cut(s) 39, 42, 211
MluCI AATT 3 cut(s) 99, 246, 306
MnlI CCTC 6 cut(s) 48, 53, 82, 217, 220, 238
Mph1103I ATGCAT 1 cut(s) 330
MseI TTAA 2 cut(s) 290, 331
MspI CCGG 2 cut(s) 5, 52
MwoI GCNNNNNNNGC 2 cut(s) 48, 138
NcoI CCATGG 1 cut(s) 109
NdeII GATC 4 cut(s) 34, 159, 201, 263
NlaIII CATG 1 cut(s) 113
NlaIV GGNNCC 2 cut(s) 314, 315
NsiI ATGCAT 1 cut(s) 330
PaqCI CACCTGC 1 cut(s) 269
PceI AGGCCT 1 cut(s) 227
PfeI GAWTC 1 cut(s) 114
PpuMI RGGWCCY 1 cut(s) 313
Psp5II RGGWCCY 1 cut(s) 313
PspN4I GGNNCC 2 cut(s) 314, 315
PspPI GGNCC 1 cut(s) 313
PspPPI RGGWCCY 1 cut(s) 313
RsaI GTAC 2 cut(s) 18, 254
RsaNI GTAC 2 cut(s) 17, 253
SaqAI TTAA 2 cut(s) 290, 331
Sau3AI GATC 4 cut(s) 34, 159, 201, 263
Sau96I GGNCC 1 cut(s) 313
SetI ASST 4 cut(s) 64, 93, 212, 283
SfaNI GCATC 2 cut(s) 29, 315
SinI GGWCC 1 cut(s) 313
Sse9I AATT 3 cut(s) 99, 246, 306
SseBI AGGCCT 1 cut(s) 227
SsiI CCGC 1 cut(s) 167
SspI AATATT 1 cut(s) 217
SspMI CTAG 1 cut(s) 285
StuI AGGCCT 1 cut(s) 227
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 186
TaqI TCGA 3 cut(s) 37, 117, 274
TasI AATT 3 cut(s) 99, 246, 306
TfiI GAWTC 1 cut(s) 114
Tru1I TTAA 2 cut(s) 290, 331
Tru9I TTAA 2 cut(s) 290, 331
TspDTI ATGAA 3 cut(s) 135, 258, 318
VpaK11BI GGWCC 1 cut(s) 313
XapI RAATTY 1 cut(s) 246
XspI CTAG 1 cut(s) 285
Zsp2I ATGCAT 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.