Rw4G019010

Deoxyuridine 5'-triphosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0010464
Physical Location & Seq
Reverse (-)
42105823 .. 42107012
1190 bp
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UTR
Exon/CDS
Intron
Rw4G019010.1

Sequence Viewer

Length: 285 bp
ATGGTGGACATGCCTAGCGTAACTAAACCTTTTATACTAGTAAAGAAATTAGTATTCTCAAGTTGTTTGTTCAACCAAGATCTCGGCTTCAACTCCCTCTCTCTGCCTGACCGGATTTACAATCGTCGGTTGCGAGGAGGAGCCGATGTCGATTTTGAGATCAAGGCGGGTGATAGGATTTCACAGCTGATAATAGAGAAGATCATCACCCCTGATGTTACGGAGGTTGAGGATTTGGACCGCACTGTTAGAGGTGAAGAAGGGTTTGGCTCTACCGGCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000287 GO:0003674 GO:0003824 GO:0004170 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006220 GO:0006221 GO:0006226 GO:0006244 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009141 GO:0009143 GO:0009147 GO:0009149 GO:0009157 GO:0009162 GO:0009165 GO:0009166 GO:0009176 GO:0009177 GO:0009200 GO:0009204 GO:0009211 GO:0009213 GO:0009219 GO:0009221 GO:0009223 GO:0009262 GO:0009263 GO:0009264 GO:0009265 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042802 GO:0043167 GO:0043169 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046078 GO:0046080 GO:0046081 GO:0046385 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0046872 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0072529 GO:0090304 GO:0090407 GO:1901135 GO:1901136 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00240 ko00983 ko01100 map00240 map00983 map01100
Pfam Domains
Protein Families
dUTPase

Protein Analysis

94

Amino Acids

10.49

Weight (kDa)

4.85

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dUTPase PF00692 49 - 93 1.7e-10 dUTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 167, 241
AgsI TTSAA 2 cut(s) 73, 91
AhlI ACTAGT 1 cut(s) 37
AjuI GAANNNNNNNTTGG 2 cut(s) 249, 281
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
AspS9I GGNCC 1 cut(s) 238
AsuHPI GGTGA 3 cut(s) 182, 199, 266
AvaII GGWCC 1 cut(s) 238
BcuI ACTAGT 1 cut(s) 37
BfaI CTAG 2 cut(s) 15, 38
BglII AGATCT 1 cut(s) 79
Bme18I GGWCC 1 cut(s) 238
BmgT120I GGNCC 1 cut(s) 238
BmiI GGNNCC 1 cut(s) 142
BpuEI CTTGAG 1 cut(s) 43
BsaWI WCCGGW 1 cut(s) 111
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bse118I RCCGGY 1 cut(s) 275
BseRI GAGGAG 2 cut(s) 150, 153
BsiSI CCGG 2 cut(s) 112, 276
Bsp143I GATC 3 cut(s) 79, 159, 201
BspACI CCGC 2 cut(s) 167, 241
BspLI GGNNCC 1 cut(s) 142
BsrFI RCCGGY 1 cut(s) 275
BssAI RCCGGY 1 cut(s) 275
BssMI GATC 3 cut(s) 79, 159, 201
Bst4CI ACNGT 1 cut(s) 247
BstKTI GATC 3 cut(s) 82, 162, 204
BstMBI GATC 3 cut(s) 79, 159, 201
BstMWI GCNNNNNNNGC 1 cut(s) 276
BstNSI RCATGY 1 cut(s) 13
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 243
Cfr10I RCCGGY 1 cut(s) 275
Cfr13I GGNCC 1 cut(s) 238
CviAII CATG 1 cut(s) 10
CviJI RGCY 4 cut(s) 87, 143, 187, 270
CviKI_1 RGCY 4 cut(s) 87, 143, 187, 270
DpnI GATC 3 cut(s) 81, 161, 203
DpnII GATC 3 cut(s) 79, 159, 201
Eco47I GGWCC 1 cut(s) 238
FaeI CATG 1 cut(s) 13
FaiI YATR 2 cut(s) 11, 35
FatI CATG 1 cut(s) 9
FauI CCCGC 1 cut(s) 160
FspBI CTAG 2 cut(s) 15, 38
HapII CCGG 2 cut(s) 112, 276
Hin1II CATG 1 cut(s) 13
HpaII CCGG 2 cut(s) 112, 276
HphI GGTGA 3 cut(s) 182, 199, 266
Hpy166II GTNNAC 1 cut(s) 7
Hpy8I GTNNAC 1 cut(s) 7
Hpy99I CGWCG 1 cut(s) 129
HpyAV CCTTC 1 cut(s) 254
HpyCH4III ACNGT 1 cut(s) 247
HpyF10VI GCNNNNNNNGC 1 cut(s) 276
Hsp92II CATG 1 cut(s) 13
Kzo9I GATC 3 cut(s) 79, 159, 201
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 3 cut(s) 120, 125, 225
MaeI CTAG 2 cut(s) 15, 38
MaeIII GTNAC 2 cut(s) 19, 217
MalI GATC 3 cut(s) 81, 161, 203
MboI GATC 3 cut(s) 79, 159, 201
MboII GAAGA 2 cut(s) 211, 269
MflI RGATCY 1 cut(s) 79
MluCI AATT 1 cut(s) 47
MnlI CCTC 6 cut(s) 107, 128, 131, 217, 223, 245
MspA1I CMGCKG 1 cut(s) 187
MspI CCGG 2 cut(s) 112, 276
MwoI GCNNNNNNNGC 1 cut(s) 276
NdeII GATC 3 cut(s) 79, 159, 201
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 1 cut(s) 142
NmeAIII GCCGAG 1 cut(s) 63
NspI RCATGY 1 cut(s) 13
PcsI WCGNNNNNNNCGW 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 142
PspPI GGNCC 1 cut(s) 238
PsuI RGATCY 1 cut(s) 79
PvuII CAGCTG 1 cut(s) 187
Sau3AI GATC 3 cut(s) 79, 159, 201
Sau96I GGNCC 1 cut(s) 238
SetI ASST 4 cut(s) 31, 189, 228, 256
SinI GGWCC 1 cut(s) 238
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
SpeI ACTAGT 1 cut(s) 37
Sse9I AATT 1 cut(s) 47
SsiI CCGC 2 cut(s) 167, 241
SspMI CTAG 2 cut(s) 15, 38
TaaI ACNGT 1 cut(s) 247
TaqI TCGA 1 cut(s) 150
TasI AATT 1 cut(s) 47
TscAI CASTG 1 cut(s) 250
TspGWI ACGGA 1 cut(s) 236
TspRI CASTG 1 cut(s) 250
VpaK11BI GGWCC 1 cut(s) 238
XceI RCATGY 1 cut(s) 13
XspI CTAG 2 cut(s) 15, 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.