Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0010464

Physical Location & Seq

Genomic Coordinates Reverse (-)

30406395 .. 30408394

Gene Structure 2000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG293300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTTCATAACTACTCTGATTGAGTCTGGGCATTCAACCTTAGCAAGGAGGCGTGGAGCATTGTTGTTCCTTACTTGTATGATAACACCGCAAAAAGGGTTGGCATTGAAGCATTCCATTGATGTTGGAGCTGGAGTGATAGATGCTGATAGTGATTACAGAGGACTAGTTGGGGTGGTTATGTTCAACCATTCCGATGTCGATTTTGAGATCAAGGCGGGTGATAGGATTGCACAACTGATAATAGAGAAGATCATCACCCCTGATATAATGGAGGCCTCTGTTTATGGTTTTGAAATCGAGGACTTTTGGGGATCAACCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004170 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006220 GO:0006221 GO:0006226 GO:0006244 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009141 GO:0009143 GO:0009147 GO:0009149 GO:0009157 GO:0009162 GO:0009165 GO:0009166 GO:0009176 GO:0009177 GO:0009200 GO:0009204 GO:0009211 GO:0009213 GO:0009219 GO:0009221 GO:0009223 GO:0009262 GO:0009263 GO:0009264 GO:0009265 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042802 GO:0043167 GO:0043169 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046078 GO:0046080 GO:0046081 GO:0046385 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0046872 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0072529 GO:0090304 GO:0090407 GO:1901135 GO:1901136 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

dUTPase

Protein Analysis

108

Amino Acids

11.87

Weight (kDa)

4.81

Isoelectric Point (pI)

29.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dUTPase	PF00692	24 - 92	1.6e-20	dUTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46940 AT3G46940
fragaria_vesca	FvH4_2g39911 FvH4_2g39911
malus_domestica	MD08G1034400.v1.1 MD08G1034500.v1.1 MD15G1031300.v1.1
prunus_persica	Prupe.1G380600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0300871
rosa_laevigata	RLG00000011294 RLG00000018147 RLG00000018469
rosa_roxburghii	Rroxscaffold_7G00167350
rosa_rugosa	Rorug06G0299400 Rorug06G0299500
rosa_samantha	Rh3DG293300 Rh6AG412700 Rh6BG419900 Rh6CG427400 Rh6DG412700
rosa_wichuraiana	Rw4G019010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	89, 218
AclWI	GGATC	1 cut(s)	322
AfiI	CCNNNNNNNGG	2 cut(s)	45, 95
AgsI	TTSAA	4 cut(s)	36, 109, 187, 296
AhlI	ACTAGT	1 cut(s)	166
AluBI	AGCT	1 cut(s)	131
AluI	AGCT	1 cut(s)	131
AlwI	GGATC	1 cut(s)	322
AoxI	GGCC	1 cut(s)	276
AsuHPI	GGTGA	2 cut(s)	233, 250
BcuI	ACTAGT	1 cut(s)	166
BfaI	CTAG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	133
BpmI	CTGGAG	1 cut(s)	153
Bpu10I	CCTNAGC	1 cut(s)	40
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 95
BseLI	CCNNNNNNNGG	2 cut(s)	45, 95
BshFI	GGCC	1 cut(s)	278
BslI	CCNNNNNNNGG	2 cut(s)	45, 95
BsmI	GAATGC	2 cut(s)	31, 112
BsnI	GGCC	1 cut(s)	278
Bsp143I	GATC	3 cut(s)	210, 252, 314
BspACI	CCGC	2 cut(s)	89, 218
BspANI	GGCC	1 cut(s)	278
BspPI	GGATC	1 cut(s)	322
BssMI	GATC	3 cut(s)	210, 252, 314
BstDEI	CTNAG	1 cut(s)	40
BstENI	CCTNNNNNAGG	1 cut(s)	43
BstKTI	GATC	3 cut(s)	213, 255, 317
BstMBI	GATC	3 cut(s)	210, 252, 314
BsuRI	GGCC	1 cut(s)	278
CviJI	RGCY	2 cut(s)	131, 278
CviKI_1	RGCY	2 cut(s)	131, 278
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	3 cut(s)	212, 254, 316
DpnII	GATC	3 cut(s)	210, 252, 314
Eco147I	AGGCCT	1 cut(s)	278
EcoNI	CCTNNNNNAGG	1 cut(s)	43
FaiI	YATR	5 cut(s)	8, 80, 182, 269, 288
FauI	CCCGC	1 cut(s)	211
FspBI	CTAG	1 cut(s)	167
GsuI	CTGGAG	1 cut(s)	153
HaeIII	GGCC	1 cut(s)	278
HinfI	GANTC	1 cut(s)	23
HphI	GGTGA	2 cut(s)	233, 250
Hpy188I	TCNGA	2 cut(s)	18, 196
HpyCH4V	TGCA	1 cut(s)	233
HpyF3I	CTNAG	1 cut(s)	40
Kzo9I	GATC	3 cut(s)	210, 252, 314
LmnI	GCTCC	2 cut(s)	56, 128
LpnPI	CCDG	3 cut(s)	12, 117, 276
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	1 cut(s)	167
MalI	GATC	3 cut(s)	212, 254, 316
MboI	GATC	3 cut(s)	210, 252, 314
MboII	GAAGA	1 cut(s)	262
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	5 cut(s)	42, 155, 268, 289, 295
MslI	CAYNNNNRTG	1 cut(s)	195
Mva1269I	GAATGC	2 cut(s)	31, 112
NdeII	GATC	3 cut(s)	210, 252, 314
PceI	AGGCCT	1 cut(s)	278
PctI	GAATGC	2 cut(s)	31, 112
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	195
Sau3AI	GATC	3 cut(s)	210, 252, 314
SchI	GAGTC	1 cut(s)	32
SetI	ASST	2 cut(s)	41, 133
SfaNI	GCATC	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	195
SpeI	ACTAGT	1 cut(s)	166
SseBI	AGGCCT	1 cut(s)	278
SsiI	CCGC	2 cut(s)	89, 218
SspMI	CTAG	1 cut(s)	167
StuI	AGGCCT	1 cut(s)	278
TaqI	TCGA	2 cut(s)	201, 300
XagI	CCTNNNNNAGG	1 cut(s)	43
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.