Rorug06G0299500

Deoxyuridine 5'-triphosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0010464
Physical Location & Seq
Forward (+)
45178718 .. 45179076
359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0299500.1

Sequence Viewer

Length: 270 bp
ATGTCATCATCTTCAAGAATCCTTGTTTGCTTGTTCTTGGTGTTGCTCACTACCAGTCTCCAGCACACAGAAGCAACCTTTGAGTCTTCACCGAGTGTTGACGACGGACCTTGGGGATGCGACCCTGGTCCATGCCAAACCAAATGTTGCCTGTGCACTGTGGTTCGGTCAAGGCCAGTCTGTGGAAAATGCTGTCCAGCAGATGATGAGACACAACCAGGAGGATTACCGTTCTCTCCCAAGGCTGCTCCCATCAAACTTGATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000287 GO:0003674 GO:0003824 GO:0004170 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006220 GO:0006221 GO:0006226 GO:0006244 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009141 GO:0009143 GO:0009147 GO:0009149 GO:0009157 GO:0009162 GO:0009165 GO:0009166 GO:0009176 GO:0009177 GO:0009200 GO:0009204 GO:0009211 GO:0009213 GO:0009219 GO:0009221 GO:0009223 GO:0009262 GO:0009263 GO:0009264 GO:0009265 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042802 GO:0043167 GO:0043169 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046078 GO:0046080 GO:0046081 GO:0046385 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0046872 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0072529 GO:0090304 GO:0090407 GO:1901135 GO:1901136 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00240 ko00983 ko01100 map00240 map00983 map01100
Pfam Domains
Protein Families
dUTPase

Protein Analysis

89

Amino Acids

9.4

Weight (kDa)

5.07

Isoelectric Point (pI)

74.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 182
AdeI CACNNNGTG 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 182
AgsI TTSAA 1 cut(s) 15
AjnI CCWGG 2 cut(s) 124, 217
Alw21I GWGCWC 1 cut(s) 158
Alw26I GTCTC 2 cut(s) 62, 203
Alw44I GTGCAC 1 cut(s) 154
AoxI GGCC 1 cut(s) 173
ApaLI GTGCAC 1 cut(s) 154
ApeKI GCWGC 1 cut(s) 245
ArsI GACNNNNNNTTYG 1 cut(s) 249
AspS9I GGNCC 2 cut(s) 107, 128
AsuHPI GGTGA 1 cut(s) 81
AvaII GGWCC 2 cut(s) 107, 128
BaeGI GKGCMC 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 232
BccI CCATC 1 cut(s) 260
BciT130I CCWGG 2 cut(s) 126, 219
BcoDI GTCTC 2 cut(s) 62, 203
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
Bme1390I CCNGG 2 cut(s) 126, 219
Bme18I GGWCC 2 cut(s) 107, 128
BmgT120I GGNCC 2 cut(s) 107, 128
BmrFI CCNGG 2 cut(s) 126, 219
BmsI GCATC 1 cut(s) 107
BoxI GACNNNNGTC 1 cut(s) 126
BpiI GAAGAC 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 44
BsaJI CCNNGG 3 cut(s) 110, 124, 240
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse1I ACTGG 2 cut(s) 54, 176
BseBI CCWGG 2 cut(s) 126, 219
BseDI CCNNGG 3 cut(s) 110, 124, 240
BseGI GGATG 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 182
BseNI ACTGG 2 cut(s) 54, 176
BseSI GKGCMC 1 cut(s) 158
BseXI GCAGC 1 cut(s) 232
BshFI GGCC 1 cut(s) 175
BsiHKAI GWGCWC 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 182
BsmAI GTCTC 2 cut(s) 62, 203
BsnI GGCC 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 158
BspANI GGCC 1 cut(s) 175
BsrI ACTGG 2 cut(s) 54, 176
BssECI CCNNGG 3 cut(s) 110, 124, 240
BssT1I CCWWGG 2 cut(s) 110, 240
Bst2UI CCWGG 2 cut(s) 126, 219
Bst4CI ACNGT 2 cut(s) 160, 231
BstF5I GGATG 1 cut(s) 122
BstMAI GTCTC 2 cut(s) 62, 203
BstNI CCWGG 2 cut(s) 126, 219
BstPAI GACNNNNGTC 1 cut(s) 126
BstSCI CCNGG 2 cut(s) 124, 217
BstSLI GKGCMC 1 cut(s) 158
BstV1I GCAGC 1 cut(s) 232
BstV2I GAAGAC 1 cut(s) 78
BsuRI GGCC 1 cut(s) 175
BtsCI GGATG 1 cut(s) 122
BtsIMutI CAGTG 1 cut(s) 156
Cfr13I GGNCC 2 cut(s) 107, 128
CviAII CATG 1 cut(s) 132
CviJI RGCY 2 cut(s) 175, 245
CviKI_1 RGCY 2 cut(s) 175, 245
DraIII CACNNNGTG 1 cut(s) 95
Eco130I CCWWGG 2 cut(s) 110, 240
Eco47I GGWCC 2 cut(s) 107, 128
EcoRII CCWGG 2 cut(s) 124, 217
EcoT14I CCWWGG 2 cut(s) 110, 240
ErhI CCWWGG 2 cut(s) 110, 240
FaeI CATG 1 cut(s) 135
FaiI YATR 1 cut(s) 133
FatI CATG 1 cut(s) 131
Fnu4HI GCNGC 1 cut(s) 246
FokI GGATG 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 246
GluI GCNGC 1 cut(s) 246
GsuI CTGGAG 1 cut(s) 44
HaeIII GGCC 1 cut(s) 175
Hin1II CATG 1 cut(s) 135
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HinfI GANTC 2 cut(s) 18, 83
HphI GGTGA 1 cut(s) 81
Hpy166II GTNNAC 2 cut(s) 100, 156
Hpy188I TCNGA 1 cut(s) 269
Hpy188III TCNNGA 1 cut(s) 15
Hpy8I GTNNAC 2 cut(s) 100, 156
Hpy99I CGWCG 1 cut(s) 107
HpyCH4III ACNGT 2 cut(s) 160, 231
HpyCH4V TGCA 1 cut(s) 156
Hsp92II CATG 1 cut(s) 135
LmnI GCTCC 1 cut(s) 253
LpnPI CCDG 9 cut(s) 67, 74, 111, 138, 164, 189, 204, 210, 231
Lsp1109I GCAGC 1 cut(s) 232
LweI GCATC 1 cut(s) 107
MboII GAAGA 2 cut(s) 3, 78
MhlI GDGCHC 1 cut(s) 158
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 1 cut(s) 215
MspR9I CCNGG 2 cut(s) 126, 219
MvaI CCWGG 2 cut(s) 126, 219
NlaIII CATG 1 cut(s) 135
PfeI GAWTC 1 cut(s) 18
PflMI CCANNNNNTGG 1 cut(s) 182
PkrI GCNGC 1 cut(s) 247
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PshAI GACNNNNGTC 1 cut(s) 126
Psp6I CCWGG 2 cut(s) 124, 217
PspGI CCWGG 2 cut(s) 124, 217
PspPI GGNCC 2 cut(s) 107, 128
SatI GCNGC 1 cut(s) 246
Sau96I GGNCC 2 cut(s) 107, 128
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 2 cut(s) 126, 219
SduI GDGCHC 1 cut(s) 158
SetI ASST 2 cut(s) 80, 112
SfaNI GCATC 1 cut(s) 107
SinI GGWCC 2 cut(s) 107, 128
StyD4I CCNGG 2 cut(s) 124, 217
StyI CCWWGG 2 cut(s) 110, 240
TaaI ACNGT 2 cut(s) 160, 231
TaqII GACCGA 1 cut(s) 156
TfiI GAWTC 1 cut(s) 18
TscAI CASTG 1 cut(s) 163
TseI GCWGC 1 cut(s) 245
TspGWI ACGGA 1 cut(s) 120
TspRI CASTG 1 cut(s) 163
Van91I CCANNNNNTGG 1 cut(s) 182
VneI GTGCAC 1 cut(s) 154
VpaK11BI GGWCC 2 cut(s) 107, 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.