Rh6AG412700

Deoxyuridine 5'-triphosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0010464
Physical Location & Seq
Forward (+)
60897878 .. 60899033
1156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG412700.1

Sequence Viewer

Length: 513 bp
ATGGCGGGAAATCTGGGCATAATGGCGGGAATATTTGGCGCCACAATCCCCATAACATCGTCCTTTGCGTCTCCTTCTCTATTTAAACCACCCCAATCTCCCTACTTGATCCTGAATCTCCTTCATCCCAAAAACCCAAATTACCGCCGTGACTCTCTCACCCAAATGGCCCAGCAAAACGGAAACCACGAAGTCACGGAGCGAGCTCCCAAGATCGCCAAGCTCCAACACAACGGCGACGTTTCGAAAGCGACCTCCGCCGGTTTTTTCAGGGTGAAGAAGCTCTCTGAAAATGCCGTTCTGCCCTCCAGAGGCTCTCCTCTCTCTGCTGGTTATGACCTCTCAAGCGCAACGGAGACGAAGATACCAGGCAGAGGAAAAGCCTTGGTCCCAACCGATCTGAGCATTGCAGTTCCTGAAGGAACCTATGCCCGAGTTGGTAAAACCCTAACCCTAATCCCCAATTTTTTGTTGCCATCAATTTCCGATCAATTTAGTTCAAATGTTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000287 GO:0003674 GO:0003824 GO:0004170 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006220 GO:0006221 GO:0006226 GO:0006244 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009141 GO:0009143 GO:0009147 GO:0009149 GO:0009157 GO:0009162 GO:0009165 GO:0009166 GO:0009176 GO:0009177 GO:0009200 GO:0009204 GO:0009211 GO:0009213 GO:0009219 GO:0009221 GO:0009223 GO:0009262 GO:0009263 GO:0009264 GO:0009265 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042802 GO:0043167 GO:0043169 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046078 GO:0046080 GO:0046081 GO:0046385 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0046872 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0072529 GO:0090304 GO:0090407 GO:1901135 GO:1901136 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00240 ko00983 ko01100 map00240 map00983 map01100
Pfam Domains
Protein Families
dUTPase

Protein Analysis

170

Amino Acids

18.13

Weight (kDa)

9.94

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dUTPase PF00692 98 - 146 2.1e-09 dUTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 38
AciI CCGC 4 cut(s) 5, 26, 145, 258
AclWI GGATC 1 cut(s) 103
AcuI CTGAAG 1 cut(s) 438
AcyI GRCGYC 1 cut(s) 39
AfiI CCNNNNNNNGG 2 cut(s) 311, 374
AgsI TTSAA 1 cut(s) 501
AjnI CCWGG 1 cut(s) 367
AluBI AGCT 3 cut(s) 206, 223, 283
AluI AGCT 3 cut(s) 206, 223, 283
Alw21I GWGCWC 1 cut(s) 208
Alw26I GTCTC 2 cut(s) 75, 350
AlwI GGATC 1 cut(s) 103
AlwNI CAGNNNCTG 1 cut(s) 416
Ama87I CYCGRG 1 cut(s) 432
AoxI GGCC 1 cut(s) 168
AspLEI GCGC 2 cut(s) 41, 350
AspS9I GGNCC 2 cut(s) 169, 388
AsuHPI GGTGA 2 cut(s) 151, 286
AsuII TTCGAA 1 cut(s) 245
AvaI CYCGRG 1 cut(s) 432
AvaII GGWCC 1 cut(s) 388
BanI GGYRCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 208
Bbv12I GWGCWC 1 cut(s) 208
BccI CCATC 1 cut(s) 484
BceAI ACGGC 3 cut(s) 132, 250, 281
BciT130I CCWGG 1 cut(s) 369
BcoDI GTCTC 2 cut(s) 75, 350
BfoI RGCGCY 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 369
Bme18I GGWCC 1 cut(s) 388
BmeT110I CYCGRG 1 cut(s) 432
BmgT120I GGNCC 2 cut(s) 169, 388
BmiI GGNNCC 3 cut(s) 40, 390, 424
BmrFI CCNGG 1 cut(s) 369
BpmI CTGGAG 1 cut(s) 292
Bpu14I TTCGAA 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 328
BsaHI GRCGYC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 384
Bsc4I CCNNNNNNNGG 2 cut(s) 311, 374
Bse118I RCCGGY 1 cut(s) 260
Bse3DI GCAATG 1 cut(s) 405
BseBI CCWGG 1 cut(s) 369
BseDI CCNNGG 1 cut(s) 384
BseGI GGATG 1 cut(s) 124
BseLI CCNNNNNNNGG 2 cut(s) 311, 374
BseMI GCAATG 1 cut(s) 405
BseMII CTCAG 1 cut(s) 392
BseRI GAGGAG 1 cut(s) 309
BseYI CCCAGC 1 cut(s) 171
BshFI GGCC 1 cut(s) 170
BshNI GGYRCC 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 208
BsiHKCI CYCGRG 1 cut(s) 432
BsiSI CCGG 1 cut(s) 261
BslFI GGGAC 1 cut(s) 374
BslI CCNNNNNNNGG 2 cut(s) 311, 374
BsmAI GTCTC 2 cut(s) 75, 350
BsmBI CGTCTC 2 cut(s) 75, 350
BsmFI GGGAC 1 cut(s) 374
BsnI GGCC 1 cut(s) 170
BsoBI CYCGRG 1 cut(s) 432
Bsp119I TTCGAA 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 4 cut(s) 108, 213, 397, 487
BspACI CCGC 4 cut(s) 5, 26, 145, 258
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 1 cut(s) 393
BspLI GGNNCC 3 cut(s) 40, 390, 424
BspPI GGATC 1 cut(s) 103
BspT104I TTCGAA 1 cut(s) 245
BspT107I GGYRCC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 405
BsrFI RCCGGY 1 cut(s) 260
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 384
BssMI GATC 4 cut(s) 108, 213, 397, 487
BssNI GRCGYC 1 cut(s) 39
BssT1I CCWWGG 1 cut(s) 384
Bst2UI CCWGG 1 cut(s) 369
BstACI GRCGYC 1 cut(s) 39
BstBI TTCGAA 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 1 cut(s) 401
BstF5I GGATG 1 cut(s) 124
BstH2I RGCGCY 1 cut(s) 42
BstHHI GCGC 2 cut(s) 41, 350
BstKTI GATC 4 cut(s) 111, 216, 400, 490
BstMAI GTCTC 2 cut(s) 75, 350
BstMBI GATC 4 cut(s) 108, 213, 397, 487
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstNI CCWGG 1 cut(s) 369
BstSCI CCNGG 1 cut(s) 367
BsuRI GGCC 1 cut(s) 170
BtsCI GGATG 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 204
CaiI CAGNNNCTG 1 cut(s) 416
CfoI GCGC 2 cut(s) 41, 350
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 2 cut(s) 169, 388
CseI GACGC 1 cut(s) 57
CviJI RGCY 6 cut(s) 170, 206, 223, 283, 315, 383
CviKI_1 RGCY 6 cut(s) 170, 206, 223, 283, 315, 383
DdeI CTNAG 1 cut(s) 401
DinI GGCGCC 1 cut(s) 40
DpnI GATC 4 cut(s) 110, 215, 399, 489
DpnII GATC 4 cut(s) 108, 213, 397, 487
DraI TTTAAA 1 cut(s) 85
EciI GGCGGA 1 cut(s) 247
Ecl136II GAGCTC 1 cut(s) 206
Eco130I CCWWGG 1 cut(s) 384
Eco24I GRGCYC 1 cut(s) 208
Eco47I GGWCC 1 cut(s) 388
Eco53kI GAGCTC 1 cut(s) 206
Eco57I CTGAAG 1 cut(s) 438
Eco88I CYCGRG 1 cut(s) 432
EcoICRI GAGCTC 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 367
EcoT14I CCWWGG 1 cut(s) 384
EcoT38I GRGCYC 1 cut(s) 208
EgeI GGCGCC 1 cut(s) 40
EheI GGCGCC 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 384
Esp3I CGTCTC 2 cut(s) 75, 350
FaiI YATR 4 cut(s) 20, 53, 336, 429
FaqI GGGAC 1 cut(s) 374
FauI CCCGC 1 cut(s) 19
FokI GGATG 1 cut(s) 111
FriOI GRGCYC 1 cut(s) 208
GlaI GCGC 2 cut(s) 40, 349
GsaI CCCAGC 1 cut(s) 175
GsuI CTGGAG 1 cut(s) 292
HaeII RGCGCY 1 cut(s) 42
HaeIII GGCC 1 cut(s) 170
HapII CCGG 1 cut(s) 261
HgaI GACGC 1 cut(s) 57
HhaI GCGC 2 cut(s) 41, 350
Hin1I GRCGYC 1 cut(s) 39
Hin6I GCGC 2 cut(s) 39, 348
HinP1I GCGC 2 cut(s) 39, 348
HinfI GANTC 2 cut(s) 115, 152
HpaII CCGG 1 cut(s) 261
HphI GGTGA 2 cut(s) 151, 286
Hpy188I TCNGA 3 cut(s) 289, 402, 487
Hpy188III TCNNGA 3 cut(s) 112, 309, 416
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 3 cut(s) 84, 131, 413
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 1 cut(s) 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
HpyF3I CTNAG 1 cut(s) 401
HpySE526I ACGT 1 cut(s) 240
Hsp92I GRCGYC 1 cut(s) 39
HspAI GCGC 2 cut(s) 39, 348
KasI GGCGCC 1 cut(s) 38
Kzo9I GATC 4 cut(s) 108, 213, 397, 487
LmnI GCTCC 3 cut(s) 199, 211, 228
LpnPI CCDG 9 cut(s) 125, 185, 256, 274, 315, 322, 354, 381, 429
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 2 cut(s) 149, 193
MalI GATC 4 cut(s) 110, 215, 399, 489
MboI GATC 4 cut(s) 108, 213, 397, 487
MboII GAAGA 2 cut(s) 289, 373
MhlI GDGCHC 1 cut(s) 208
MluCI AATT 4 cut(s) 139, 463, 480, 491
Mly113I GGCGCC 1 cut(s) 39
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 250
MnlI CCTC 6 cut(s) 265, 305, 316, 330, 350, 368
MseI TTAA 2 cut(s) 84, 507
MslI CAYNNNNRTG 1 cut(s) 164
MspI CCGG 1 cut(s) 261
MspR9I CCNGG 1 cut(s) 369
MvaI CCWGG 1 cut(s) 369
MwoI GCNNNNNNNGC 1 cut(s) 257
NarI GGCGCC 1 cut(s) 39
NdeII GATC 4 cut(s) 108, 213, 397, 487
NlaIV GGNNCC 3 cut(s) 40, 390, 424
NmuCI GTSAC 2 cut(s) 149, 193
NspV TTCGAA 1 cut(s) 245
PcsI WCGNNNNNNNCGW 2 cut(s) 65, 186
PfeI GAWTC 1 cut(s) 115
PleI GAGTC 1 cut(s) 146
PluTI GGCGCC 1 cut(s) 42
PpsI GAGTC 1 cut(s) 146
Psp124BI GAGCTC 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 367
PspFI CCCAGC 1 cut(s) 171
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 3 cut(s) 40, 390, 424
PspPI GGNCC 2 cut(s) 169, 388
PstNI CAGNNNCTG 1 cut(s) 416
RseI CAYNNNNRTG 1 cut(s) 164
SacI GAGCTC 1 cut(s) 208
SaqAI TTAA 2 cut(s) 84, 507
Sau3AI GATC 4 cut(s) 108, 213, 397, 487
Sau96I GGNCC 2 cut(s) 169, 388
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 1 cut(s) 369
SduI GDGCHC 1 cut(s) 208
SetI ASST 7 cut(s) 208, 225, 243, 257, 285, 342, 428
SfoI GGCGCC 1 cut(s) 40
SfuI TTCGAA 1 cut(s) 245
SinI GGWCC 1 cut(s) 388
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
Sse9I AATT 4 cut(s) 139, 463, 480, 491
SsiI CCGC 4 cut(s) 5, 26, 145, 258
SspDI GGCGCC 1 cut(s) 38
SspI AATATT 1 cut(s) 33
SstI GAGCTC 1 cut(s) 208
StyD4I CCNGG 1 cut(s) 367
StyI CCWWGG 1 cut(s) 384
TaiI ACGT 1 cut(s) 243
TaqI TCGA 1 cut(s) 245
TasI AATT 4 cut(s) 139, 463, 480, 491
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 2 cut(s) 84, 507
Tru9I TTAA 2 cut(s) 84, 507
TseFI GTSAC 2 cut(s) 149, 193
Tsp45I GTSAC 2 cut(s) 149, 193
TspDTI ATGAA 1 cut(s) 113
TspGWI ACGGA 3 cut(s) 195, 212, 368
VpaK11BI GGWCC 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.