MD15G1031300.v1.1

Deoxyuridine 5'-triphosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0010464
Physical Location & Seq
Forward (+)
1911581 .. 1912473
893 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1031300.v1.1.491

Sequence Viewer

Length: 525 bp
ATGCCCCAGCAAGACGTGCAGAACGGAAGCCATGAAGTCAAAGAGCCGACTCCCAAGATCGCCAAGCTTCACGAAAACGGCGACGTTTCTGGAAACTTTGCCCCATTTTTCCGGGTGAAGAAGCTCTCTGAAAAGGCAGTTTTGCCGGCCAGAGGTTCCCCTCTCTCTGCAGGCTATGATCTCTCAAGCGCGACGGAGACGAAAGTTCCGGCCAGAGGAAAAGCCCTGGTCCCAACCGATCTGAGCATTGCCGTCCCTGAGGGAACCTATGCCCGAATTGCGCCACGATCGGGGCTGGCATGGAAGCACTCGATTGATGTCGGAGCTGGTGTCATCGATGCAGATTACAGAGGTCCGGTTGGGGTGGTGCTGTTCAACTTTTCTGATGTTGATTTTGAGATCAAGGAGGGTGACAGGATTGCACAGCTGATCATTGAGAAGATCATCATCCCTGATGTTGTGGAGGTTGAGGATTTGGATTCCACGTTCAGAGGTGCCGGAGGGTTTGGGTCTACCGGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000287 GO:0003674 GO:0003824 GO:0004170 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006220 GO:0006221 GO:0006226 GO:0006244 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009141 GO:0009143 GO:0009147 GO:0009149 GO:0009157 GO:0009162 GO:0009165 GO:0009166 GO:0009176 GO:0009177 GO:0009200 GO:0009204 GO:0009211 GO:0009213 GO:0009219 GO:0009221 GO:0009223 GO:0009262 GO:0009263 GO:0009264 GO:0009265 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042802 GO:0043167 GO:0043169 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046078 GO:0046080 GO:0046081 GO:0046385 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0046872 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0072529 GO:0090304 GO:0090407 GO:1901135 GO:1901136 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00240 ko00983 ko01100 map00240 map00983 map01100
Pfam Domains
Protein Families
dUTPase

Protein Analysis

175

Amino Acids

18.51

Weight (kDa)

5.22

Isoelectric Point (pI)

30.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dUTPase PF00692 45 - 173 5.5e-46 dUTPase
DCD PF22769 73 - 147 1.7e-08 dCTP deaminase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 494
AccI GTMKAC 1 cut(s) 512
AccII CGCG 1 cut(s) 191
AcoI YGGCCR 2 cut(s) 147, 210
AfiI CCNNNNNNNGG 3 cut(s) 152, 215, 290
AgeI ACCGGT 1 cut(s) 515
AgsI TTSAA 1 cut(s) 376
AjiI CACGTC 1 cut(s) 16
AjnI CCWGG 1 cut(s) 225
AloI GAACNNNNNNTCC 2 cut(s) 470, 502
AluBI AGCT 4 cut(s) 67, 124, 326, 427
AluI AGCT 4 cut(s) 67, 124, 326, 427
Alw26I GTCTC 1 cut(s) 191
AoxI GGCC 2 cut(s) 147, 210
AsiGI ACCGGT 1 cut(s) 515
AspLEI GCGC 2 cut(s) 191, 283
AspS9I GGNCC 2 cut(s) 229, 353
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 2 cut(s) 127, 422
AvaII GGWCC 2 cut(s) 229, 353
AxyI CCTNAGG 1 cut(s) 258
BanI GGYRCC 1 cut(s) 494
BceAI ACGGC 2 cut(s) 94, 236
BciT130I CCWGG 1 cut(s) 227
BclI TGATCA 1 cut(s) 429
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 191
BfmI CTRYAG 1 cut(s) 168
Bme1390I CCNGG 2 cut(s) 113, 227
Bme18I GGWCC 2 cut(s) 229, 353
BmgBI CACGTC 1 cut(s) 16
BmgT120I GGNCC 2 cut(s) 229, 353
BmiI GGNNCC 4 cut(s) 157, 231, 265, 496
BmrFI CCNGG 2 cut(s) 113, 227
BmsI GCATC 1 cut(s) 328
BpuEI CTTGAG 1 cut(s) 169
BpuMI CCSGG 1 cut(s) 113
Bsa29I ATCGAT 1 cut(s) 336
BsaBI GATNNNNATC 1 cut(s) 446
BsaJI CCNNGG 1 cut(s) 225
BsaWI WCCGGW 2 cut(s) 355, 515
BsaXI ACNNNNNCTCC 2 cut(s) 315, 345
Bsc4I CCNNNNNNNGG 3 cut(s) 152, 215, 290
Bse118I RCCGGY 2 cut(s) 145, 515
Bse21I CCTNAGG 1 cut(s) 258
Bse3DI GCAATG 1 cut(s) 246
Bse8I GATNNNNATC 1 cut(s) 446
BseBI CCWGG 1 cut(s) 227
BseCI ATCGAT 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 1 cut(s) 447
BseJI GATNNNNATC 1 cut(s) 446
BseLI CCNNNNNNNGG 3 cut(s) 152, 215, 290
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 2 cut(s) 233, 249
BseYI CCCAGC 1 cut(s) 6
BsgI GTGCAG 1 cut(s) 38
Bsh1236I CGCG 1 cut(s) 191
Bsh1285I CGRYCG 1 cut(s) 290
BshFI GGCC 2 cut(s) 149, 212
BshNI GGYRCC 1 cut(s) 494
BshTI ACCGGT 1 cut(s) 515
BshVI ATCGAT 1 cut(s) 336
BsiEI CGRYCG 1 cut(s) 290
BsiSI CCGG 6 cut(s) 112, 146, 209, 356, 498, 516
BslFI GGGAC 2 cut(s) 215, 239
BslI CCNNNNNNNGG 3 cut(s) 152, 215, 290
BsmAI GTCTC 1 cut(s) 191
BsmBI CGTCTC 1 cut(s) 191
BsmFI GGGAC 2 cut(s) 215, 239
BsnI GGCC 2 cut(s) 149, 212
Bsp143I GATC 7 cut(s) 57, 178, 238, 287, 399, 429, 441
BspANI GGCC 2 cut(s) 149, 212
BspCNI CTCAG 2 cut(s) 234, 250
BspDI ATCGAT 1 cut(s) 336
BspFNI CGCG 1 cut(s) 191
BspLI GGNNCC 4 cut(s) 157, 231, 265, 496
BspMAI CTGCAG 1 cut(s) 172
BspT107I GGYRCC 1 cut(s) 494
BsrDI GCAATG 1 cut(s) 246
BsrFI RCCGGY 2 cut(s) 145, 515
BssAI RCCGGY 2 cut(s) 145, 515
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 7 cut(s) 57, 178, 238, 287, 399, 429, 441
Bst2UI CCWGG 1 cut(s) 227
BstAPI GCANNNNNTGC 1 cut(s) 16
BstC8I GCNNGC 3 cut(s) 147, 172, 297
BstDEI CTNAG 2 cut(s) 242, 258
BstF5I GGATG 1 cut(s) 447
BstFNI CGCG 1 cut(s) 191
BstHHI GCGC 2 cut(s) 191, 283
BstKTI GATC 7 cut(s) 60, 181, 241, 290, 402, 432, 444
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 7 cut(s) 57, 178, 238, 287, 399, 429, 441
BstMCI CGRYCG 1 cut(s) 290
BstMWI GCNNNNNNNGC 2 cut(s) 16, 278
BstNI CCWGG 1 cut(s) 227
BstSCI CCNGG 2 cut(s) 111, 225
BstSFI CTRYAG 1 cut(s) 168
BstUI CGCG 1 cut(s) 191
Bsu15I ATCGAT 1 cut(s) 336
Bsu36I CCTNAGG 1 cut(s) 258
BsuRI GGCC 2 cut(s) 149, 212
BsuTUI ATCGAT 1 cut(s) 336
BtrI CACGTC 1 cut(s) 16
BtsCI GGATG 1 cut(s) 447
Cac8I GCNNGC 3 cut(s) 147, 172, 297
CfoI GCGC 2 cut(s) 191, 283
Cfr10I RCCGGY 2 cut(s) 145, 515
Cfr13I GGNCC 2 cut(s) 229, 353
ClaI ATCGAT 1 cut(s) 336
CspAI ACCGGT 1 cut(s) 515
CviAII CATG 2 cut(s) 32, 300
DdeI CTNAG 2 cut(s) 242, 258
DpnI GATC 7 cut(s) 59, 180, 240, 289, 401, 431, 443
DpnII GATC 7 cut(s) 57, 178, 238, 287, 399, 429, 441
EaeI YGGCCR 2 cut(s) 147, 210
Eco47I GGWCC 2 cut(s) 229, 353
Eco81I CCTNAGG 1 cut(s) 258
EcoRII CCWGG 1 cut(s) 225
Esp3I CGTCTC 1 cut(s) 191
FaeI CATG 2 cut(s) 35, 303
FaiI YATR 4 cut(s) 33, 177, 270, 301
FaqI GGGAC 2 cut(s) 215, 239
FatI CATG 2 cut(s) 31, 299
FbaI TGATCA 1 cut(s) 429
FblI GTMKAC 1 cut(s) 512
FokI GGATG 1 cut(s) 434
GlaI GCGC 2 cut(s) 190, 282
GsaI CCCAGC 1 cut(s) 10
HaeIII GGCC 2 cut(s) 149, 212
HapII CCGG 6 cut(s) 112, 146, 209, 356, 498, 516
HhaI GCGC 2 cut(s) 191, 283
Hin1II CATG 2 cut(s) 35, 303
Hin6I GCGC 2 cut(s) 189, 281
HinP1I GCGC 2 cut(s) 189, 281
HindIII AAGCTT 1 cut(s) 65
HinfI GANTC 2 cut(s) 49, 479
HpaII CCGG 6 cut(s) 112, 146, 209, 356, 498, 516
HphI GGTGA 2 cut(s) 127, 422
Hpy166II GTNNAC 1 cut(s) 513
Hpy188I TCNGA 5 cut(s) 130, 243, 323, 385, 491
Hpy188III TCNNGA 2 cut(s) 71, 90
Hpy8I GTNNAC 1 cut(s) 513
Hpy99I CGWCG 2 cut(s) 86, 196
HpyCH4IV ACGT 3 cut(s) 15, 84, 485
HpyCH4V TGCA 4 cut(s) 19, 170, 341, 422
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 278
HpyF3I CTNAG 2 cut(s) 242, 258
HpySE526I ACGT 3 cut(s) 15, 84, 485
Hsp92II CATG 2 cut(s) 35, 303
HspAI GCGC 2 cut(s) 189, 281
KroI GCCGGC 1 cut(s) 145
KroNI GCCGGC 1 cut(s) 147
Ksp22I TGATCA 1 cut(s) 429
Kzo9I GATC 7 cut(s) 57, 178, 238, 287, 399, 429, 441
LmnI GCTCC 1 cut(s) 323
LweI GCATC 1 cut(s) 328
MaeII ACGT 3 cut(s) 15, 84, 485
MaeIII GTNAC 1 cut(s) 410
MalI GATC 7 cut(s) 59, 180, 240, 289, 401, 431, 443
MboI GATC 7 cut(s) 57, 178, 238, 287, 399, 429, 441
MboII GAAGA 2 cut(s) 130, 451
MluCI AATT 1 cut(s) 276
MlyI GAGTC 1 cut(s) 43
MmeI TCCRAC 1 cut(s) 301
MroNI GCCGGC 1 cut(s) 145
MspA1I CMGCKG 1 cut(s) 427
MspI CCGG 6 cut(s) 112, 146, 209, 356, 498, 516
MspR9I CCNGG 2 cut(s) 113, 227
MvaI CCWGG 1 cut(s) 227
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 2 cut(s) 16, 278
NaeI GCCGGC 1 cut(s) 147
NciI CCSGG 1 cut(s) 113
NdeII GATC 7 cut(s) 57, 178, 238, 287, 399, 429, 441
NgoMIV GCCGGC 1 cut(s) 145
NlaIII CATG 2 cut(s) 35, 303
NlaIV GGNNCC 4 cut(s) 157, 231, 265, 496
NmuCI GTSAC 1 cut(s) 410
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PdiI GCCGGC 1 cut(s) 147
PfeI GAWTC 1 cut(s) 479
PinAI ACCGGT 1 cut(s) 515
Ple19I CGATCG 1 cut(s) 290
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
Psp6I CCWGG 1 cut(s) 225
PspFI CCCAGC 1 cut(s) 6
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 4 cut(s) 157, 231, 265, 496
PspPI GGNCC 2 cut(s) 229, 353
PstI CTGCAG 1 cut(s) 172
PvuI CGATCG 1 cut(s) 290
PvuII CAGCTG 1 cut(s) 427
Sau3AI GATC 7 cut(s) 57, 178, 238, 287, 399, 429, 441
Sau96I GGNCC 2 cut(s) 229, 353
SchI GAGTC 1 cut(s) 43
ScrFI CCNGG 2 cut(s) 113, 227
SfaNI GCATC 1 cut(s) 328
SfcI CTRYAG 1 cut(s) 168
SinI GGWCC 2 cut(s) 229, 353
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 1 cut(s) 276
StyD4I CCNGG 2 cut(s) 111, 225
TaiI ACGT 3 cut(s) 18, 87, 488
TaqI TCGA 2 cut(s) 311, 336
TasI AATT 1 cut(s) 276
TfiI GAWTC 1 cut(s) 479
TseFI GTSAC 1 cut(s) 410
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 1 cut(s) 48
TspGWI ACGGA 2 cut(s) 39, 209
VpaK11BI GGWCC 2 cut(s) 229, 353
XmiI GTMKAC 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.