MD08G1034500.v1.1

Deoxyuridine 5'-triphosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0010464
Physical Location & Seq
Forward (+)
2438898 .. 2439926
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1034500.v1.1.491

Sequence Viewer

Length: 525 bp
ATGGCCCAGCAAGACGCGCAGAAAGGAAGCCACGAAGTCAGAGAGCCGACTCCCAAGATCGCCAGGCTTCACGAAAACAGCGACGTTTCTGGAAACGCCGCCCCGTTTTTCCGGGTGAAGAAGCACTCCGAAAAGGCGGTTTTGCCCGCGAGAGGCTCGCCTCTCTCTGCAGGGTATGATCTCTCGAGCGCGACGGAGACGAAAGTTCCGGCCAGAGGAAAAGCCCTGGTCCCGACCGATCTGAGCATTGAGGTCCCTGAAGGAACCTATGCACATATTGGGCCACGATCGGGGCTGGCATGCGACCACTCGATCGTTGTCGGAGCTGATGTCATCGATGCTGATTACAGGGGTCCGGTTGGGGTTGTGCTCTTCAACTCTTCTGATGTCGATTTTGAGATCAAGGAGGGTGATAGGATTGCTCAGCTGATCATTGGGAAGAGCATCACCCCTGATGTTGTGGAGGTTGAGGATTTGGATTCCACTGCCGGAGGTGCCGGAGGGTTCGGGCCTACCGGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000287 GO:0003674 GO:0003824 GO:0004170 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006220 GO:0006221 GO:0006226 GO:0006244 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009141 GO:0009143 GO:0009147 GO:0009149 GO:0009157 GO:0009162 GO:0009165 GO:0009166 GO:0009176 GO:0009177 GO:0009200 GO:0009204 GO:0009211 GO:0009213 GO:0009219 GO:0009221 GO:0009223 GO:0009262 GO:0009263 GO:0009264 GO:0009265 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042802 GO:0043167 GO:0043169 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046078 GO:0046080 GO:0046081 GO:0046385 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0046872 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0072529 GO:0090304 GO:0090407 GO:1901135 GO:1901136 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00240 ko00983 ko01100 map00240 map00983 map01100
Pfam Domains
Protein Families
dUTPase

Protein Analysis

175

Amino Acids

18.14

Weight (kDa)

5.05

Isoelectric Point (pI)

36.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dUTPase PF00692 45 - 173 4.6e-40 dUTPase
DCD PF22769 71 - 145 5.7e-09 dCTP deaminase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 494
AccII CGCG 3 cut(s) 17, 149, 191
AciI CCGC 3 cut(s) 99, 137, 147
AcoI YGGCCR 1 cut(s) 210
AcuI CTGAAG 1 cut(s) 279
AfiI CCNNNNNNNGG 3 cut(s) 152, 215, 290
AgeI ACCGGT 1 cut(s) 515
AgsI TTSAA 1 cut(s) 376
AjnI CCWGG 2 cut(s) 62, 225
AluBI AGCT 2 cut(s) 326, 427
AluI AGCT 2 cut(s) 326, 427
Alw21I GWGCWC 1 cut(s) 372
Alw26I GTCTC 1 cut(s) 191
Ama87I CYCGRG 1 cut(s) 184
AoxI GGCC 4 cut(s) 3, 210, 281, 509
AsiGI ACCGGT 1 cut(s) 515
AspLEI GCGC 2 cut(s) 19, 191
AspS9I GGNCC 6 cut(s) 4, 229, 253, 281, 353, 509
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 3 cut(s) 127, 422, 439
AvaI CYCGRG 1 cut(s) 184
AvaII GGWCC 3 cut(s) 229, 253, 353
BanI GGYRCC 1 cut(s) 494
Bbv12I GWGCWC 1 cut(s) 372
BciT130I CCWGG 2 cut(s) 64, 227
BclI TGATCA 1 cut(s) 429
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 191
BfmI CTRYAG 1 cut(s) 168
BisI GCNGC 1 cut(s) 99
BlpI GCTNAGC 1 cut(s) 423
BlsI GCNGC 1 cut(s) 100
Bme1390I CCNGG 3 cut(s) 64, 113, 227
Bme18I GGWCC 3 cut(s) 229, 253, 353
BmeT110I CYCGRG 1 cut(s) 184
BmgT120I GGNCC 6 cut(s) 4, 229, 253, 281, 353, 509
BmiI GGNNCC 5 cut(s) 231, 255, 265, 354, 496
BmrFI CCNGG 3 cut(s) 64, 113, 227
BmsI GCATC 2 cut(s) 328, 453
Bpu1102I GCTNAGC 1 cut(s) 423
BpuMI CCSGG 1 cut(s) 113
Bsa29I ATCGAT 1 cut(s) 336
BsaJI CCNNGG 1 cut(s) 225
BsaWI WCCGGW 2 cut(s) 355, 515
BsaXI ACNNNNNCTCC 2 cut(s) 315, 345
Bsc4I CCNNNNNNNGG 3 cut(s) 152, 215, 290
Bse118I RCCGGY 1 cut(s) 515
BseBI CCWGG 2 cut(s) 64, 227
BseCI ATCGAT 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 225
BseLI CCNNNNNNNGG 3 cut(s) 152, 215, 290
BseMII CTCAG 2 cut(s) 233, 437
BseYI CCCAGC 1 cut(s) 6
Bsh1236I CGCG 3 cut(s) 17, 149, 191
Bsh1285I CGRYCG 3 cut(s) 237, 290, 315
BshFI GGCC 4 cut(s) 5, 212, 283, 511
BshNI GGYRCC 1 cut(s) 494
BshTI ACCGGT 1 cut(s) 515
BshVI ATCGAT 1 cut(s) 336
BsiEI CGRYCG 3 cut(s) 237, 290, 315
BsiHKAI GWGCWC 1 cut(s) 372
BsiHKCI CYCGRG 1 cut(s) 184
BsiSI CCGG 6 cut(s) 112, 209, 356, 489, 498, 516
BslFI GGGAC 2 cut(s) 215, 239
BslI CCNNNNNNNGG 3 cut(s) 152, 215, 290
BsmAI GTCTC 1 cut(s) 191
BsmBI CGTCTC 1 cut(s) 191
BsmFI GGGAC 2 cut(s) 215, 239
BsnI GGCC 4 cut(s) 5, 212, 283, 511
BsoBI CYCGRG 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 372
Bsp143I GATC 7 cut(s) 57, 178, 238, 287, 312, 399, 429
Bsp1720I GCTNAGC 1 cut(s) 423
BspACI CCGC 3 cut(s) 99, 137, 147
BspANI GGCC 4 cut(s) 5, 212, 283, 511
BspCNI CTCAG 2 cut(s) 234, 436
BspDI ATCGAT 1 cut(s) 336
BspFNI CGCG 3 cut(s) 17, 149, 191
BspLI GGNNCC 5 cut(s) 231, 255, 265, 354, 496
BspMAI CTGCAG 1 cut(s) 172
BspQI GCTCTTC 2 cut(s) 377, 434
BspT107I GGYRCC 1 cut(s) 494
BsrFI RCCGGY 1 cut(s) 515
BssAI RCCGGY 1 cut(s) 515
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 7 cut(s) 57, 178, 238, 287, 312, 399, 429
Bst2UI CCWGG 2 cut(s) 64, 227
Bst6I CTCTTC 3 cut(s) 377, 385, 434
BstC8I GCNNGC 4 cut(s) 147, 158, 297, 301
BstDEI CTNAG 2 cut(s) 242, 423
BstFNI CGCG 3 cut(s) 17, 149, 191
BstHHI GCGC 2 cut(s) 19, 191
BstKTI GATC 7 cut(s) 60, 181, 241, 290, 315, 402, 432
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 7 cut(s) 57, 178, 238, 287, 312, 399, 429
BstMCI CGRYCG 3 cut(s) 237, 290, 315
BstMWI GCNNNNNNNGC 2 cut(s) 16, 494
BstNI CCWGG 2 cut(s) 64, 227
BstNSI RCATGY 1 cut(s) 303
BstSCI CCNGG 3 cut(s) 62, 111, 225
BstSFI CTRYAG 1 cut(s) 168
BstUI CGCG 3 cut(s) 17, 149, 191
Bsu15I ATCGAT 1 cut(s) 336
BsuRI GGCC 4 cut(s) 5, 212, 283, 511
BsuTUI ATCGAT 1 cut(s) 336
BtsI GCAGTG 1 cut(s) 483
BtsIMutI CAGTG 1 cut(s) 483
Cac8I GCNNGC 4 cut(s) 147, 158, 297, 301
CfoI GCGC 2 cut(s) 19, 191
Cfr10I RCCGGY 1 cut(s) 515
Cfr13I GGNCC 6 cut(s) 4, 229, 253, 281, 353, 509
ClaI ATCGAT 1 cut(s) 336
CseI GACGC 1 cut(s) 23
CspAI ACCGGT 1 cut(s) 515
CviAII CATG 1 cut(s) 300
DdeI CTNAG 2 cut(s) 242, 423
DpnI GATC 7 cut(s) 59, 180, 240, 289, 314, 401, 431
DpnII GATC 7 cut(s) 57, 178, 238, 287, 312, 399, 429
EaeI YGGCCR 1 cut(s) 210
Eam1104I CTCTTC 3 cut(s) 377, 385, 434
EarI CTCTTC 3 cut(s) 377, 385, 434
Eco47I GGWCC 3 cut(s) 229, 253, 353
Eco57I CTGAAG 1 cut(s) 279
Eco88I CYCGRG 1 cut(s) 184
EcoO109I RGGNCCY 1 cut(s) 253
EcoRII CCWGG 2 cut(s) 62, 225
Esp3I CGTCTC 1 cut(s) 191
FaeI CATG 1 cut(s) 303
FaiI YATR 4 cut(s) 177, 270, 276, 301
FaqI GGGAC 2 cut(s) 215, 239
FatI CATG 1 cut(s) 299
FauI CCCGC 1 cut(s) 154
FbaI TGATCA 1 cut(s) 429
Fnu4HI GCNGC 1 cut(s) 99
Fsp4HI GCNGC 1 cut(s) 99
GlaI GCGC 2 cut(s) 18, 190
GluI GCNGC 1 cut(s) 99
GsaI CCCAGC 1 cut(s) 10
HaeIII GGCC 4 cut(s) 5, 212, 283, 511
HapII CCGG 6 cut(s) 112, 209, 356, 489, 498, 516
HgaI GACGC 1 cut(s) 23
HhaI GCGC 2 cut(s) 19, 191
Hin1II CATG 1 cut(s) 303
Hin6I GCGC 2 cut(s) 17, 189
HinP1I GCGC 2 cut(s) 17, 189
HinfI GANTC 2 cut(s) 49, 479
HpaII CCGG 6 cut(s) 112, 209, 356, 489, 498, 516
HphI GGTGA 3 cut(s) 127, 422, 439
Hpy188I TCNGA 5 cut(s) 41, 130, 243, 323, 385
Hpy188III TCNNGA 4 cut(s) 71, 90, 184, 232
Hpy99I CGWCG 2 cut(s) 86, 196
HpyAV CCTTC 1 cut(s) 254
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 2 cut(s) 170, 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 494
HpyF3I CTNAG 2 cut(s) 242, 423
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 1 cut(s) 303
HspAI GCGC 2 cut(s) 17, 189
Ksp22I TGATCA 1 cut(s) 429
Kzo9I GATC 7 cut(s) 57, 178, 238, 287, 312, 399, 429
LguI GCTCTTC 2 cut(s) 377, 434
LmnI GCTCC 1 cut(s) 323
LweI GCATC 2 cut(s) 328, 453
MaeII ACGT 1 cut(s) 84
MalI GATC 7 cut(s) 59, 180, 240, 289, 314, 401, 431
MboI GATC 7 cut(s) 57, 178, 238, 287, 312, 399, 429
MboII GAAGA 4 cut(s) 130, 364, 372, 451
MhlI GDGCHC 1 cut(s) 372
MlyI GAGTC 1 cut(s) 43
MmeI TCCRAC 1 cut(s) 301
MnlI CCTC 9 cut(s) 146, 171, 209, 244, 400, 457, 463, 485, 494
MspA1I CMGCKG 1 cut(s) 427
MspI CCGG 6 cut(s) 112, 209, 356, 489, 498, 516
MspR9I CCNGG 3 cut(s) 64, 113, 227
MvaI CCWGG 2 cut(s) 64, 227
MvnI CGCG 3 cut(s) 17, 149, 191
MwoI GCNNNNNNNGC 2 cut(s) 16, 494
NciI CCSGG 1 cut(s) 113
NdeII GATC 7 cut(s) 57, 178, 238, 287, 312, 399, 429
NlaIII CATG 1 cut(s) 303
NlaIV GGNNCC 5 cut(s) 231, 255, 265, 354, 496
NspI RCATGY 1 cut(s) 303
PaeI GCATGC 1 cut(s) 303
PaeR7I CTCGAG 1 cut(s) 184
PciSI GCTCTTC 2 cut(s) 377, 434
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PfeI GAWTC 1 cut(s) 479
PinAI ACCGGT 1 cut(s) 515
PkrI GCNGC 1 cut(s) 100
Ple19I CGATCG 2 cut(s) 290, 315
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PpuMI RGGWCCY 1 cut(s) 253
Psp5II RGGWCCY 1 cut(s) 253
Psp6I CCWGG 2 cut(s) 62, 225
PspFI CCCAGC 1 cut(s) 6
PspGI CCWGG 2 cut(s) 62, 225
PspN4I GGNNCC 5 cut(s) 231, 255, 265, 354, 496
PspPI GGNCC 6 cut(s) 4, 229, 253, 281, 353, 509
PspPPI RGGWCCY 1 cut(s) 253
PstI CTGCAG 1 cut(s) 172
PvuI CGATCG 2 cut(s) 290, 315
PvuII CAGCTG 1 cut(s) 427
SapI GCTCTTC 2 cut(s) 377, 434
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 7 cut(s) 57, 178, 238, 287, 312, 399, 429
Sau96I GGNCC 6 cut(s) 4, 229, 253, 281, 353, 509
SchI GAGTC 1 cut(s) 43
ScrFI CCNGG 3 cut(s) 64, 113, 227
SduI GDGCHC 1 cut(s) 372
SetI ASST 7 cut(s) 87, 255, 269, 328, 429, 468, 496
SfaNI GCATC 2 cut(s) 328, 453
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 184
SinI GGWCC 3 cut(s) 229, 253, 353
SlaI CTCGAG 1 cut(s) 184
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
SphI GCATGC 1 cut(s) 303
SsiI CCGC 3 cut(s) 99, 137, 147
StyD4I CCNGG 3 cut(s) 62, 111, 225
TaiI ACGT 1 cut(s) 87
TaqI TCGA 4 cut(s) 185, 311, 336, 390
TaqII GACCGA 1 cut(s) 251
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 1 cut(s) 479
TscAI CASTG 1 cut(s) 490
TspGWI ACGGA 1 cut(s) 209
TspRI CASTG 1 cut(s) 490
VpaK11BI GGWCC 3 cut(s) 229, 253, 353
XceI RCATGY 1 cut(s) 303
XhoI CTCGAG 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.