MD08G1034400.v1.1

Deoxyuridine 5'-triphosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0010464
Physical Location & Seq
Forward (+)
2429903 .. 2430916
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1034400.v1.1.491

Sequence Viewer

Length: 645 bp
ATGCCAGTGTTCGCGACTCTCTCTCTATTTGAACGAACCCAGTCTTCCCATTGGCGCCCAAAATTCGGTCATTGCCAATTCCCGCCACATCGCCGCCGCTGTCTCTCGCAAGCTCTCAGAATGGCCCAGCAAGACGCGCAGAACGGAAGCCACGAAGTCAAAAAGCCGACTACCAAGATCGCCAGGCTTCACGAAAACGACGACGTTTCTGGAAATGCCGCCCCGTTTTTCCTGGTGAAGAAGCTCTCCGAAAAGGCGGTTTTGCCCGCGAGAGGCTCGCCTCACTCTGCAGCCTATGATCTCTCGAGCGCGACGGAGACGAAAGTTCCGGCCAGAGGAAAAGCCCTGGTCCCAACCGATCTGAGCATTGCGGTCCCTGAAGGAACCTATGCACGAATTGCGCCACGATCGGGGCTGGCATGGAAGCATTCGATCGATGTCGGAGCTGGTGTCATCGATGCTGATTACAGGGGTCCGGTTGGGGTTGTGCTGTTCAACTTTTCCAATGTTGATTTTGAGATCAAGGAGGGTGATAGGATTGCTCAGCTGATCATTGAGAAGATCATCACCCCTGATGTTGTGGAGGTTGAGGATTTGGATTCCACTGCCAGAGGTGCCGGAGGGTTCGGGTCTACCGGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000287 GO:0003674 GO:0003824 GO:0004170 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006220 GO:0006221 GO:0006226 GO:0006244 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009141 GO:0009143 GO:0009147 GO:0009149 GO:0009157 GO:0009162 GO:0009165 GO:0009166 GO:0009176 GO:0009177 GO:0009200 GO:0009204 GO:0009211 GO:0009213 GO:0009219 GO:0009221 GO:0009223 GO:0009262 GO:0009263 GO:0009264 GO:0009265 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042802 GO:0043167 GO:0043169 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046078 GO:0046080 GO:0046081 GO:0046385 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0046872 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0072529 GO:0090304 GO:0090407 GO:1901135 GO:1901136 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00240 ko00983 ko01100 map00240 map00983 map01100
Pfam Domains
Protein Families
dUTPase

Protein Analysis

215

Amino Acids

23.17

Weight (kDa)

8.55

Isoelectric Point (pI)

39.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dUTPase PF00692 85 - 213 4.4e-46 dUTPase
DCD PF22769 113 - 187 1.9e-08 dCTP deaminase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 54, 614
AccI GTMKAC 1 cut(s) 632
AccII CGCG 4 cut(s) 14, 137, 269, 311
AciI CCGC 7 cut(s) 83, 94, 97, 219, 257, 267, 371
AcoI YGGCCR 1 cut(s) 330
AcsI RAATTY 1 cut(s) 62
AcuI CTGAAG 1 cut(s) 399
AcyI GRCGYC 1 cut(s) 55
AfiI CCNNNNNNNGG 4 cut(s) 65, 272, 335, 410
AgeI ACCGGT 1 cut(s) 635
AgsI TTSAA 2 cut(s) 32, 496
AjnI CCWGG 3 cut(s) 182, 231, 345
AluBI AGCT 4 cut(s) 113, 244, 446, 547
AluI AGCT 4 cut(s) 113, 244, 446, 547
Alw26I GTCTC 2 cut(s) 107, 311
Ama87I CYCGRG 1 cut(s) 304
AoxI GGCC 2 cut(s) 123, 330
ApeKI GCWGC 1 cut(s) 290
ApoI RAATTY 1 cut(s) 62
AsiGI ACCGGT 1 cut(s) 635
AspLEI GCGC 4 cut(s) 57, 139, 311, 403
AspS9I GGNCC 4 cut(s) 124, 349, 373, 473
AsuHPI GGTGA 3 cut(s) 247, 542, 559
AvaI CYCGRG 1 cut(s) 304
AvaII GGWCC 3 cut(s) 349, 373, 473
BanI GGYRCC 2 cut(s) 54, 614
BbsI GAAGAC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 302
BciT130I CCWGG 3 cut(s) 184, 233, 347
BclI TGATCA 1 cut(s) 549
BcoDI GTCTC 2 cut(s) 107, 311
BfmI CTRYAG 1 cut(s) 288
BfoI RGCGCY 1 cut(s) 58
BisI GCNGC 4 cut(s) 94, 97, 219, 291
BlpI GCTNAGC 1 cut(s) 543
BlsI GCNGC 4 cut(s) 95, 98, 220, 292
Bme1390I CCNGG 3 cut(s) 184, 233, 347
Bme18I GGWCC 3 cut(s) 349, 373, 473
BmeT110I CYCGRG 1 cut(s) 304
BmgT120I GGNCC 4 cut(s) 124, 349, 373, 473
BmiI GGNNCC 6 cut(s) 56, 351, 375, 385, 474, 616
BmrFI CCNGG 3 cut(s) 184, 233, 347
BmrI ACTGGG 1 cut(s) 34
BmsI GCATC 1 cut(s) 448
BmuI ACTGGG 1 cut(s) 34
BpiI GAAGAC 1 cut(s) 36
Bpu1102I GCTNAGC 1 cut(s) 543
Bsa29I ATCGAT 2 cut(s) 435, 456
BsaHI GRCGYC 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 345
BsaWI WCCGGW 2 cut(s) 475, 635
BsaXI ACNNNNNCTCC 2 cut(s) 435, 465
Bsc4I CCNNNNNNNGG 4 cut(s) 65, 272, 335, 410
Bse118I RCCGGY 1 cut(s) 635
Bse1I ACTGG 2 cut(s) 5, 40
Bse3DI GCAATG 2 cut(s) 70, 366
BseBI CCWGG 3 cut(s) 184, 233, 347
BseCI ATCGAT 2 cut(s) 435, 456
BseDI CCNNGG 1 cut(s) 345
BseLI CCNNNNNNNGG 4 cut(s) 65, 272, 335, 410
BseMI GCAATG 2 cut(s) 70, 366
BseMII CTCAG 3 cut(s) 130, 353, 557
BseNI ACTGG 2 cut(s) 5, 40
BseXI GCAGC 1 cut(s) 302
BseYI CCCAGC 1 cut(s) 126
Bsh1236I CGCG 4 cut(s) 14, 137, 269, 311
Bsh1285I CGRYCG 2 cut(s) 410, 435
BshFI GGCC 2 cut(s) 125, 332
BshNI GGYRCC 2 cut(s) 54, 614
BshTI ACCGGT 1 cut(s) 635
BshVI ATCGAT 2 cut(s) 435, 456
BsiEI CGRYCG 2 cut(s) 410, 435
BsiHKCI CYCGRG 1 cut(s) 304
BsiSI CCGG 4 cut(s) 329, 476, 618, 636
BslFI GGGAC 2 cut(s) 335, 359
BslI CCNNNNNNNGG 4 cut(s) 65, 272, 335, 410
BsmAI GTCTC 2 cut(s) 107, 311
BsmBI CGTCTC 1 cut(s) 311
BsmFI GGGAC 2 cut(s) 335, 359
BsmI GAATGC 1 cut(s) 427
BsnI GGCC 2 cut(s) 125, 332
BsoBI CYCGRG 1 cut(s) 304
Bsp143I GATC 8 cut(s) 177, 298, 358, 407, 432, 519, 549, 561
Bsp1720I GCTNAGC 1 cut(s) 543
Bsp68I TCGCGA 1 cut(s) 14
BspACI CCGC 7 cut(s) 83, 94, 97, 219, 257, 267, 371
BspANI GGCC 2 cut(s) 125, 332
BspCNI CTCAG 3 cut(s) 129, 354, 556
BspDI ATCGAT 2 cut(s) 435, 456
BspFNI CGCG 4 cut(s) 14, 137, 269, 311
BspLI GGNNCC 6 cut(s) 56, 351, 375, 385, 474, 616
BspMAI CTGCAG 1 cut(s) 292
BspT107I GGYRCC 2 cut(s) 54, 614
BsrDI GCAATG 2 cut(s) 70, 366
BsrFI RCCGGY 1 cut(s) 635
BsrI ACTGG 2 cut(s) 5, 40
BssAI RCCGGY 1 cut(s) 635
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 8 cut(s) 177, 298, 358, 407, 432, 519, 549, 561
BssNI GRCGYC 1 cut(s) 55
Bst2UI CCWGG 3 cut(s) 184, 233, 347
BstACI GRCGYC 1 cut(s) 55
BstAPI GCANNNNNTGC 1 cut(s) 398
BstC8I GCNNGC 4 cut(s) 111, 267, 278, 417
BstDEI CTNAG 3 cut(s) 116, 362, 543
BstFNI CGCG 4 cut(s) 14, 137, 269, 311
BstH2I RGCGCY 1 cut(s) 58
BstHHI GCGC 4 cut(s) 57, 139, 311, 403
BstKTI GATC 8 cut(s) 180, 301, 361, 410, 435, 522, 552, 564
BstMAI GTCTC 2 cut(s) 107, 311
BstMBI GATC 8 cut(s) 177, 298, 358, 407, 432, 519, 549, 561
BstMCI CGRYCG 2 cut(s) 410, 435
BstMWI GCNNNNNNNGC 3 cut(s) 136, 398, 614
BstNI CCWGG 3 cut(s) 184, 233, 347
BstSCI CCNGG 3 cut(s) 182, 231, 345
BstSFI CTRYAG 1 cut(s) 288
BstUI CGCG 4 cut(s) 14, 137, 269, 311
BstV1I GCAGC 1 cut(s) 302
BstV2I GAAGAC 1 cut(s) 36
Bsu15I ATCGAT 2 cut(s) 435, 456
BsuRI GGCC 2 cut(s) 125, 332
BsuTUI ATCGAT 2 cut(s) 435, 456
BtgZI GCGATG 1 cut(s) 74
BtsI GCAGTG 1 cut(s) 603
BtsIMutI CAGTG 2 cut(s) 12, 603
BtuMI TCGCGA 1 cut(s) 14
Cac8I GCNNGC 4 cut(s) 111, 267, 278, 417
CfoI GCGC 4 cut(s) 57, 139, 311, 403
Cfr10I RCCGGY 1 cut(s) 635
Cfr13I GGNCC 4 cut(s) 124, 349, 373, 473
ClaI ATCGAT 2 cut(s) 435, 456
CseI GACGC 1 cut(s) 143
CspAI ACCGGT 1 cut(s) 635
CviAII CATG 1 cut(s) 420
DdeI CTNAG 3 cut(s) 116, 362, 543
DinI GGCGCC 1 cut(s) 56
DpnI GATC 8 cut(s) 179, 300, 360, 409, 434, 521, 551, 563
DpnII GATC 8 cut(s) 177, 298, 358, 407, 432, 519, 549, 561
EaeI YGGCCR 1 cut(s) 330
Eco47I GGWCC 3 cut(s) 349, 373, 473
Eco57I CTGAAG 1 cut(s) 399
Eco88I CYCGRG 1 cut(s) 304
EcoRII CCWGG 3 cut(s) 182, 231, 345
EgeI GGCGCC 1 cut(s) 56
EheI GGCGCC 1 cut(s) 56
Esp3I CGTCTC 1 cut(s) 311
FaeI CATG 1 cut(s) 423
FaiI YATR 3 cut(s) 297, 390, 421
FaqI GGGAC 2 cut(s) 335, 359
FatI CATG 1 cut(s) 419
FauI CCCGC 2 cut(s) 90, 274
FbaI TGATCA 1 cut(s) 549
FblI GTMKAC 1 cut(s) 632
Fnu4HI GCNGC 4 cut(s) 94, 97, 219, 291
Fsp4HI GCNGC 4 cut(s) 94, 97, 219, 291
GlaI GCGC 4 cut(s) 56, 138, 310, 402
GluI GCNGC 4 cut(s) 94, 97, 219, 291
GsaI CCCAGC 1 cut(s) 130
HaeII RGCGCY 1 cut(s) 58
HaeIII GGCC 2 cut(s) 125, 332
HapII CCGG 4 cut(s) 329, 476, 618, 636
HgaI GACGC 1 cut(s) 143
HhaI GCGC 4 cut(s) 57, 139, 311, 403
Hin1I GRCGYC 1 cut(s) 55
Hin1II CATG 1 cut(s) 423
Hin6I GCGC 4 cut(s) 55, 137, 309, 401
HinP1I GCGC 4 cut(s) 55, 137, 309, 401
HinfI GANTC 2 cut(s) 16, 599
HpaII CCGG 4 cut(s) 329, 476, 618, 636
HphI GGTGA 3 cut(s) 247, 542, 559
Hpy166II GTNNAC 1 cut(s) 633
Hpy188I TCNGA 4 cut(s) 119, 250, 363, 443
Hpy188III TCNNGA 4 cut(s) 13, 191, 210, 304
Hpy8I GTNNAC 1 cut(s) 633
Hpy99I CGWCG 3 cut(s) 203, 206, 316
HpyAV CCTTC 1 cut(s) 374
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 2 cut(s) 290, 392
HpyF10VI GCNNNNNNNGC 3 cut(s) 136, 398, 614
HpyF3I CTNAG 3 cut(s) 116, 362, 543
HpySE526I ACGT 1 cut(s) 204
Hsp92I GRCGYC 1 cut(s) 55
Hsp92II CATG 1 cut(s) 423
HspAI GCGC 4 cut(s) 55, 137, 309, 401
KasI GGCGCC 1 cut(s) 54
Ksp22I TGATCA 1 cut(s) 549
Kzo9I GATC 8 cut(s) 177, 298, 358, 407, 432, 519, 549, 561
LmnI GCTCC 1 cut(s) 443
Lsp1109I GCAGC 1 cut(s) 302
LweI GCATC 1 cut(s) 448
MaeII ACGT 1 cut(s) 204
MalI GATC 8 cut(s) 179, 300, 360, 409, 434, 521, 551, 563
MboI GATC 8 cut(s) 177, 298, 358, 407, 432, 519, 549, 561
MboII GAAGA 3 cut(s) 36, 250, 571
MluCI AATT 3 cut(s) 62, 77, 396
Mly113I GGCGCC 1 cut(s) 55
MlyI GAGTC 1 cut(s) 10
MmeI TCCRAC 1 cut(s) 421
MnlI CCTC 8 cut(s) 266, 291, 329, 520, 577, 583, 605, 614
MspA1I CMGCKG 2 cut(s) 99, 547
MspI CCGG 4 cut(s) 329, 476, 618, 636
MspR9I CCNGG 3 cut(s) 184, 233, 347
Mva1269I GAATGC 1 cut(s) 427
MvaI CCWGG 3 cut(s) 184, 233, 347
MvnI CGCG 4 cut(s) 14, 137, 269, 311
MwoI GCNNNNNNNGC 3 cut(s) 136, 398, 614
NarI GGCGCC 1 cut(s) 55
NdeII GATC 8 cut(s) 177, 298, 358, 407, 432, 519, 549, 561
NlaIII CATG 1 cut(s) 423
NlaIV GGNNCC 6 cut(s) 56, 351, 375, 385, 474, 616
NruI TCGCGA 1 cut(s) 14
PaeR7I CTCGAG 1 cut(s) 304
PcsI WCGNNNNNNNCGW 2 cut(s) 150, 198
PctI GAATGC 1 cut(s) 427
PfeI GAWTC 1 cut(s) 599
PinAI ACCGGT 1 cut(s) 635
PkrI GCNGC 4 cut(s) 95, 98, 220, 292
Ple19I CGATCG 2 cut(s) 410, 435
PleI GAGTC 1 cut(s) 10
PluTI GGCGCC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 10
Psp6I CCWGG 3 cut(s) 182, 231, 345
PspFI CCCAGC 1 cut(s) 126
PspGI CCWGG 3 cut(s) 182, 231, 345
PspN4I GGNNCC 6 cut(s) 56, 351, 375, 385, 474, 616
PspPI GGNCC 4 cut(s) 124, 349, 373, 473
PstI CTGCAG 1 cut(s) 292
PvuI CGATCG 2 cut(s) 410, 435
PvuII CAGCTG 1 cut(s) 547
RruI TCGCGA 1 cut(s) 14
SatI GCNGC 4 cut(s) 94, 97, 219, 291
Sau3AI GATC 8 cut(s) 177, 298, 358, 407, 432, 519, 549, 561
Sau96I GGNCC 4 cut(s) 124, 349, 373, 473
SchI GAGTC 1 cut(s) 10
ScrFI CCNGG 3 cut(s) 184, 233, 347
SetI ASST 8 cut(s) 115, 207, 246, 389, 448, 549, 588, 616
SfaNI GCATC 1 cut(s) 448
SfcI CTRYAG 1 cut(s) 288
SfoI GGCGCC 1 cut(s) 56
Sfr274I CTCGAG 1 cut(s) 304
SinI GGWCC 3 cut(s) 349, 373, 473
SlaI CTCGAG 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 304
SmoI CTYRAG 1 cut(s) 304
Sse9I AATT 3 cut(s) 62, 77, 396
SsiI CCGC 7 cut(s) 83, 94, 97, 219, 257, 267, 371
SspDI GGCGCC 1 cut(s) 54
StyD4I CCNGG 3 cut(s) 182, 231, 345
TaiI ACGT 1 cut(s) 207
TaqI TCGA 4 cut(s) 305, 431, 435, 456
TaqII GACCGA 1 cut(s) 56
TasI AATT 3 cut(s) 62, 77, 396
TauI GCSGC 3 cut(s) 96, 99, 221
TfiI GAWTC 1 cut(s) 599
TscAI CASTG 2 cut(s) 12, 610
TseI GCWGC 1 cut(s) 290
TspGWI ACGGA 2 cut(s) 159, 329
TspRI CASTG 2 cut(s) 12, 610
VpaK11BI GGWCC 3 cut(s) 349, 373, 473
XapI RAATTY 1 cut(s) 62
XhoI CTCGAG 1 cut(s) 304
XmiI GTMKAC 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.