Rh6DG412700

Deoxyuridine 5'-triphosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0010464
Physical Location & Seq
Forward (+)
59836115 .. 59836820
706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG412700.1

Sequence Viewer

Length: 519 bp
ATGGCCCAGCAAAACGGAAACCACGAAGTCACGGAGCGAGCTCCCAAGATCGCCAAGCTCCACCACAACGGCGACCTTTCGAAAACGACCTCCGCCGGTTTTTTCAGGGTGAAGAAGCTCTCTGAAAATGCCGTTTTGCCCTCCAGAGGTTCTCCTCTCTCTGCTGGTTATGACCTCTCAAGCGCAACGGAGACGAAGATACCAGCCAGAGGAAAAGCCTTGGTCCCAACCGATCTGAGCATTGCAGTTCCTGAAGGAACCTATGCCCGAGTTGCGCCGCGATCAGGGCTGACATGGAAGCACTCCATTGATGTGGGAGCTGGAGTGATTGATGCCGATTACAGAGGCCCGGTTGGAGTGATCTTGTTCAACCATTCTGATGTCGATTTCGAGATCAAGGTGGGTGATAGGATTGCTCAGCTGATAATTGAGATCATCATCACCCCTGATGTTGTGGAGGTTGAGGATTTGGACTCCACTGTCAGAGGTGAAGGAGGGTTTGGGTCTACAGGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000287 GO:0003674 GO:0003824 GO:0004170 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006220 GO:0006221 GO:0006226 GO:0006244 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009141 GO:0009143 GO:0009147 GO:0009149 GO:0009157 GO:0009162 GO:0009165 GO:0009166 GO:0009176 GO:0009177 GO:0009200 GO:0009204 GO:0009211 GO:0009213 GO:0009219 GO:0009221 GO:0009223 GO:0009262 GO:0009263 GO:0009264 GO:0009265 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042802 GO:0043167 GO:0043169 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046078 GO:0046080 GO:0046081 GO:0046385 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0046872 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0072529 GO:0090304 GO:0090407 GO:1901135 GO:1901136 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00240 ko00983 ko01100 map00240 map00983 map01100
Pfam Domains
Protein Families
dUTPase

Protein Analysis

172

Amino Acids

18.25

Weight (kDa)

5.71

Isoelectric Point (pI)

28.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dUTPase PF00692 43 - 171 2.6e-45 dUTPase
DCD PF22769 70 - 144 2.5e-08 dCTP deaminase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 479
AccI GTMKAC 1 cut(s) 506
AccII CGCG 1 cut(s) 280
AciI CCGC 2 cut(s) 93, 278
AcuI CTGAAG 1 cut(s) 273
AfiI CCNNNNNNNGG 3 cut(s) 146, 209, 284
AgsI TTSAA 1 cut(s) 370
AjuI GAANNNNNNNTTGG 2 cut(s) 483, 515
AluBI AGCT 5 cut(s) 41, 58, 118, 320, 421
AluI AGCT 5 cut(s) 41, 58, 118, 320, 421
Alw21I GWGCWC 1 cut(s) 43
Alw26I GTCTC 1 cut(s) 185
AlwNI CAGNNNCTG 1 cut(s) 251
Ama87I CYCGRG 1 cut(s) 267
AoxI GGCC 2 cut(s) 3, 346
AspLEI GCGC 2 cut(s) 185, 277
AspS9I GGNCC 3 cut(s) 4, 223, 347
AsuC2I CCSGG 1 cut(s) 350
AsuHPI GGTGA 4 cut(s) 121, 416, 433, 500
AsuII TTCGAA 1 cut(s) 80
AvaI CYCGRG 1 cut(s) 267
AvaII GGWCC 1 cut(s) 223
BanII GRGCYC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 43
BceAI ACGGC 2 cut(s) 85, 116
BcnI CCSGG 1 cut(s) 350
BcoDI GTCTC 1 cut(s) 185
BfmI CTRYAG 1 cut(s) 507
BisI GCNGC 1 cut(s) 278
BlpI GCTNAGC 1 cut(s) 417
BlsI GCNGC 1 cut(s) 279
Bme1390I CCNGG 1 cut(s) 350
Bme18I GGWCC 1 cut(s) 223
BmeT110I CYCGRG 1 cut(s) 267
BmgT120I GGNCC 3 cut(s) 4, 223, 347
BmiI GGNNCC 2 cut(s) 225, 259
BmrFI CCNGG 1 cut(s) 350
BmsI GCATC 1 cut(s) 322
BpmI CTGGAG 2 cut(s) 127, 342
Bpu1102I GCTNAGC 1 cut(s) 417
Bpu14I TTCGAA 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 163
BpuMI CCSGG 1 cut(s) 350
BsaBI GATNNNNATC 1 cut(s) 437
BsaJI CCNNGG 1 cut(s) 219
BsaXI ACNNNNNCTCC 2 cut(s) 309, 339
Bsc4I CCNNNNNNNGG 3 cut(s) 146, 209, 284
Bse118I RCCGGY 1 cut(s) 95
Bse3DI GCAATG 1 cut(s) 240
Bse8I GATNNNNATC 1 cut(s) 437
BseDI CCNNGG 1 cut(s) 219
BseJI GATNNNNATC 1 cut(s) 437
BseLI CCNNNNNNNGG 3 cut(s) 146, 209, 284
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 2 cut(s) 227, 431
BseRI GAGGAG 1 cut(s) 144
BseYI CCCAGC 1 cut(s) 6
Bsh1236I CGCG 1 cut(s) 280
BshFI GGCC 2 cut(s) 5, 348
BsiHKAI GWGCWC 1 cut(s) 43
BsiHKCI CYCGRG 1 cut(s) 267
BsiSI CCGG 2 cut(s) 96, 350
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 3 cut(s) 146, 209, 284
BsmAI GTCTC 1 cut(s) 185
BsmBI CGTCTC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 2 cut(s) 5, 348
BsoBI CYCGRG 1 cut(s) 267
Bsp119I TTCGAA 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 6 cut(s) 48, 232, 281, 360, 393, 432
Bsp1720I GCTNAGC 1 cut(s) 417
BspACI CCGC 2 cut(s) 93, 278
BspANI GGCC 2 cut(s) 5, 348
BspCNI CTCAG 2 cut(s) 228, 430
BspFNI CGCG 1 cut(s) 280
BspLI GGNNCC 2 cut(s) 225, 259
BspT104I TTCGAA 1 cut(s) 80
BsrDI GCAATG 1 cut(s) 240
BsrFI RCCGGY 1 cut(s) 95
BssAI RCCGGY 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 6 cut(s) 48, 232, 281, 360, 393, 432
BssT1I CCWWGG 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 481
BstBI TTCGAA 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 2 cut(s) 236, 417
BstFNI CGCG 1 cut(s) 280
BstHHI GCGC 2 cut(s) 185, 277
BstKTI GATC 6 cut(s) 51, 235, 284, 363, 396, 435
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 6 cut(s) 48, 232, 281, 360, 393, 432
BstMWI GCNNNNNNNGC 2 cut(s) 272, 286
BstSCI CCNGG 1 cut(s) 348
BstSFI CTRYAG 1 cut(s) 507
BstUI CGCG 1 cut(s) 280
BstXI CCANNNNNNTGG 1 cut(s) 313
BsuRI GGCC 2 cut(s) 5, 348
BtsIMutI CAGTG 1 cut(s) 477
Cac8I GCNNGC 1 cut(s) 39
CaiI CAGNNNCTG 1 cut(s) 251
CfoI GCGC 2 cut(s) 185, 277
Cfr10I RCCGGY 1 cut(s) 95
Cfr13I GGNCC 3 cut(s) 4, 223, 347
CviAII CATG 1 cut(s) 294
DdeI CTNAG 2 cut(s) 236, 417
DpnI GATC 6 cut(s) 50, 234, 283, 362, 395, 434
DpnII GATC 6 cut(s) 48, 232, 281, 360, 393, 432
DrdI GACNNNNNNGTC 1 cut(s) 479
DseDI GACNNNNNNGTC 1 cut(s) 479
EciI GGCGGA 1 cut(s) 82
Ecl136II GAGCTC 1 cut(s) 41
Eco130I CCWWGG 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 223
Eco53kI GAGCTC 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 273
Eco88I CYCGRG 1 cut(s) 267
EcoICRI GAGCTC 1 cut(s) 41
EcoT14I CCWWGG 1 cut(s) 219
EcoT38I GRGCYC 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 219
Esp3I CGTCTC 1 cut(s) 185
FaeI CATG 1 cut(s) 297
FaiI YATR 3 cut(s) 171, 264, 295
FaqI GGGAC 1 cut(s) 209
FatI CATG 1 cut(s) 293
FblI GTMKAC 1 cut(s) 506
Fnu4HI GCNGC 1 cut(s) 278
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 1 cut(s) 278
GlaI GCGC 2 cut(s) 184, 276
GluI GCNGC 1 cut(s) 278
GsaI CCCAGC 1 cut(s) 10
GsuI CTGGAG 2 cut(s) 127, 342
HaeIII GGCC 2 cut(s) 5, 348
HapII CCGG 2 cut(s) 96, 350
HhaI GCGC 2 cut(s) 185, 277
Hin1II CATG 1 cut(s) 297
Hin6I GCGC 2 cut(s) 183, 275
HinP1I GCGC 2 cut(s) 183, 275
HinfI GANTC 1 cut(s) 473
HpaII CCGG 2 cut(s) 96, 350
HphI GGTGA 4 cut(s) 121, 416, 433, 500
Hpy166II GTNNAC 1 cut(s) 507
Hpy188I TCNGA 4 cut(s) 124, 237, 379, 485
Hpy188III TCNNGA 3 cut(s) 144, 251, 391
Hpy8I GTNNAC 1 cut(s) 507
HpyAV CCTTC 2 cut(s) 248, 485
HpyCH4III ACNGT 1 cut(s) 481
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 286
HpyF3I CTNAG 2 cut(s) 236, 417
Hsp92II CATG 1 cut(s) 297
HspAI GCGC 2 cut(s) 183, 275
Kzo9I GATC 6 cut(s) 48, 232, 281, 360, 393, 432
LmnI GCTCC 4 cut(s) 34, 46, 63, 317
LweI GCATC 1 cut(s) 322
MaeIII GTNAC 1 cut(s) 28
MalI GATC 6 cut(s) 50, 234, 283, 362, 395, 434
MboI GATC 6 cut(s) 48, 232, 281, 360, 393, 432
MboII GAAGA 2 cut(s) 124, 208
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 1 cut(s) 426
MlyI GAGTC 1 cut(s) 467
MmeI TCCRAC 1 cut(s) 334
MslI CAYNNNNRTG 2 cut(s) 311, 378
MspA1I CMGCKG 1 cut(s) 421
MspI CCGG 2 cut(s) 96, 350
MspR9I CCNGG 1 cut(s) 350
MvnI CGCG 1 cut(s) 280
MwoI GCNNNNNNNGC 2 cut(s) 272, 286
NciI CCSGG 1 cut(s) 350
NdeII GATC 6 cut(s) 48, 232, 281, 360, 393, 432
NlaIII CATG 1 cut(s) 297
NlaIV GGNNCC 2 cut(s) 225, 259
NmuCI GTSAC 1 cut(s) 28
NspV TTCGAA 1 cut(s) 80
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PkrI GCNGC 1 cut(s) 279
PleI GAGTC 1 cut(s) 467
PpsI GAGTC 1 cut(s) 467
Psp124BI GAGCTC 1 cut(s) 43
PspFI CCCAGC 1 cut(s) 6
PspN4I GGNNCC 2 cut(s) 225, 259
PspPI GGNCC 3 cut(s) 4, 223, 347
PstNI CAGNNNCTG 1 cut(s) 251
PvuII CAGCTG 1 cut(s) 421
RseI CAYNNNNRTG 2 cut(s) 311, 378
SacI GAGCTC 1 cut(s) 43
SatI GCNGC 1 cut(s) 278
Sau3AI GATC 6 cut(s) 48, 232, 281, 360, 393, 432
Sau96I GGNCC 3 cut(s) 4, 223, 347
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 1 cut(s) 43
SfaNI GCATC 1 cut(s) 322
SfcI CTRYAG 1 cut(s) 507
SfuI TTCGAA 1 cut(s) 80
SinI GGWCC 1 cut(s) 223
SmiMI CAYNNNNRTG 2 cut(s) 311, 378
SmlI CTYRAG 1 cut(s) 178
SmoI CTYRAG 1 cut(s) 178
Sse9I AATT 1 cut(s) 426
SsiI CCGC 2 cut(s) 93, 278
SstI GAGCTC 1 cut(s) 43
StyD4I CCNGG 1 cut(s) 348
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 481
TaqI TCGA 3 cut(s) 80, 384, 390
TasI AATT 1 cut(s) 426
TauI GCSGC 1 cut(s) 280
TscAI CASTG 1 cut(s) 484
TseFI GTSAC 1 cut(s) 28
Tsp45I GTSAC 1 cut(s) 28
TspGWI ACGGA 3 cut(s) 30, 47, 203
TspRI CASTG 1 cut(s) 484
VpaK11BI GGWCC 1 cut(s) 223
XmiI GTMKAC 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.