FvH4_2g40310

1-acyl-sn-glycerol-3-phosphate acyltransferase 4

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
28741824 .. 28744637
2814 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g40310.t1

Sequence Viewer

Length: 1272 bp
ATGAGATCTTCGCCGAAAAAGATTGCCATGAGCCTTCAGGCCAGAGAGAACACCAGTCCCAGACGTGTTGCGGCAACCCCAGAAGAATGCTCCATTGAAGAAGGATCGTGGAAGGAGGAGGAGGAGGTTTGCAGTCCCTTGAAAGCTGATAGTATACAGAAGCACAGGCCCTTGACCCCTTTTAGAGTTGTAAGGGGTGTTCTATGTTTGGTGGTGTTTCTTTCCACTGCTTTCACCATTCTAGTGTGTTTTGCGCCTGTGGTAGCTGTTTTGTTGCGACTTTTTAGCATACATTACAGCAGAAAAGCAACATCCTTTCTATTTGGTAGGTGGCTGGCTCTCTGGCCCTTTCTATTCGAAAAGATAAACGGCACAAAAGTTGTATTTTCAGGCGATACTGTTCCACCTAGAGAGCGCATTTTGATTATTGCGAATCACAAAACAGAGGTGGATTGGATGTACTTGTGGGATCTTGCATTGCGAAAAGGGTCCCTTGGATACGTTAAATATGTGCTCAAGAGCAGTTTGATGAAGCTGCCTGTTTTTGGTTGGGGATTCCACATTTTGGAGTTCATTCCTTTGAAGAGGAAGTGGGAAGTAGATGAACCAATTCTCCGGAAAATGCTACTGAGTTTTGCTGATCCTCGAGACCCTCTCTGGCTTTCTATTTTTCCTGAAGGAACTGATTATGATGAAGAAAAATGCAAAAAGAGCCAGACATTTGCTGCTGAAAATGGACTTCCGGTGCTGTCACATGTACTACTTCCAAGGACTAAAGGTTTTTGTGCTTGCTTAGAAGCGCTAAGGGGTTCTTTTGATGCAGTTTATGACTTGACAATTGCATACAAGAATCAATTGCCTTCGTTTATGGACAATGCATTTGGTGTAGATCCTTCAGAAGTCCACATTCATGTTCGGCGTATTCCAATGGAAGATATCCCGGAGTCTAGCACAGATGCCGCATCTTGGTTAGTGGACACATTCCACATCAAGGACAACATGCTGTCAGATTTCCAGACTCAAGGCCATTTCCCTAATGAAGGAGGAGAAGAGGACATTTCTGCCTTCAAGGGTTTGGTAAATTTAATGTTGATACTTGTTTTGACAGTGGTTATCATTTACCTTACCATTTTTTCATCGGTCTGGTTTAAAATATACATCGGTTTATCGTGTGCATACCTTGCTTCAGCAACATATTTTGAAATCCAACCGGTGCCCGTATTAGACTTTGTTAAAGCAACATTTGTTTGCAATAGATTCAGATTGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

424

Amino Acids

48.22

Weight (kDa)

6.77

Isoelectric Point (pI)

54.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 127 - 252 4.5e-16 Acyltransferase
Acyltransf_C PF16076 295 - 350 1e-17 Acyltransferase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1213
AccB7I CCANNNNNTGG 1 cut(s) 565
AccI GTMKAC 1 cut(s) 154
AccIII TCCGGA 1 cut(s) 615
AciI CCGC 2 cut(s) 71, 960
AclWI GGATC 4 cut(s) 112, 477, 635, 884
AcsI RAATTY 1 cut(s) 1081
AcuI CTGAAG 4 cut(s) 20, 696, 879, 1170
AfaI GTAC 2 cut(s) 461, 759
AfeI AGCGCT 1 cut(s) 801
AfiI CCNNNNNNNGG 5 cut(s) 545, 565, 966, 991, 1040
AflIII ACRYGT 2 cut(s) 64, 754
AgeI ACCGGT 1 cut(s) 1210
AgsI TTSAA 5 cut(s) 98, 142, 583, 1069, 1202
AjiI CACGTC 1 cut(s) 65
AloI GAACNNNNNNTCC 2 cut(s) 597, 629
AluBI AGCT 3 cut(s) 146, 266, 535
AluI AGCT 3 cut(s) 146, 266, 535
Alw21I GWGCWC 1 cut(s) 516
Alw26I GTCTC 1 cut(s) 642
AlwI GGATC 4 cut(s) 112, 477, 635, 884
Ama87I CYCGRG 1 cut(s) 645
Aor13HI TCCGGA 1 cut(s) 615
Aor51HI AGCGCT 1 cut(s) 801
AoxI GGCC 4 cut(s) 39, 167, 344, 1024
ApeKI GCWGC 2 cut(s) 535, 725
ApoI RAATTY 1 cut(s) 1081
ArsI GACNNNNNNTTYG 2 cut(s) 863, 895
AsiGI ACCGGT 1 cut(s) 1210
Asp700I GAANNNNTTC 1 cut(s) 609
AspLEI GCGC 3 cut(s) 256, 417, 802
AspS9I GGNCC 3 cut(s) 168, 345, 489
AsuC2I CCSGG 1 cut(s) 941
AsuHPI GGTGA 1 cut(s) 226
AsuII TTCGAA 1 cut(s) 357
AvaI CYCGRG 1 cut(s) 645
AvaII GGWCC 1 cut(s) 489
BaeGI GKGCMC 1 cut(s) 1218
BanI GGYRCC 1 cut(s) 1213
Bbv12I GWGCWC 1 cut(s) 516
BbvI GCAGC 2 cut(s) 522, 712
BceAI ACGGC 1 cut(s) 385
BciVI GTATCC 1 cut(s) 491
BcnI CCSGG 1 cut(s) 941
BcoDI GTCTC 1 cut(s) 642
BfaI CTAG 3 cut(s) 242, 408, 948
BfoI RGCGCY 1 cut(s) 803
BfuI GTATCC 1 cut(s) 491
BglII AGATCT 1 cut(s) 5
BisI GCNGC 4 cut(s) 72, 536, 726, 960
BlsI GCNGC 4 cut(s) 73, 537, 727, 961
Bme1390I CCNGG 1 cut(s) 941
Bme18I GGWCC 1 cut(s) 489
BmeT110I CYCGRG 1 cut(s) 645
BmgBI CACGTC 1 cut(s) 65
BmgT120I GGNCC 3 cut(s) 168, 345, 489
BmiI GGNNCC 3 cut(s) 490, 491, 1215
BmrFI CCNGG 1 cut(s) 941
BmsI GCATC 3 cut(s) 808, 946, 971
BplI GAGNNNNNCTC 2 cut(s) 639, 671
Bpu10I CCTNAGC 1 cut(s) 803
Bpu14I TTCGAA 1 cut(s) 357
BpuEI CTTGAG 2 cut(s) 500, 1005
BpuMI CCSGG 1 cut(s) 941
BsaI GGTCTC 1 cut(s) 642
BsaJI CCNNGG 2 cut(s) 493, 767
BsaWI WCCGGW 3 cut(s) 615, 742, 1210
BsaXI ACNNNNNCTCC 2 cut(s) 597, 627
Bsc4I CCNNNNNNNGG 5 cut(s) 545, 565, 966, 991, 1040
Bse118I RCCGGY 1 cut(s) 1210
Bse1I ACTGG 1 cut(s) 54
Bse3DI GCAATG 1 cut(s) 476
BseAI TCCGGA 1 cut(s) 615
BseDI CCNNGG 2 cut(s) 493, 767
BseGI GGATG 2 cut(s) 311, 462
BseLI CCNNNNNNNGG 5 cut(s) 545, 565, 966, 991, 1040
BseMI GCAATG 1 cut(s) 476
BseMII CTCAG 1 cut(s) 620
BseNI ACTGG 1 cut(s) 54
BseRI GAGGAG 4 cut(s) 131, 134, 137, 1059
BseSI GKGCMC 1 cut(s) 1218
BseXI GCAGC 2 cut(s) 522, 712
BshFI GGCC 4 cut(s) 41, 169, 346, 1026
BshNI GGYRCC 1 cut(s) 1213
BshTI ACCGGT 1 cut(s) 1210
BsiHKAI GWGCWC 1 cut(s) 516
BsiHKCI CYCGRG 1 cut(s) 645
BsiSI CCGG 4 cut(s) 616, 743, 941, 1211
BslFI GGGAC 3 cut(s) 42, 120, 475
BslI CCNNNNNNNGG 5 cut(s) 545, 565, 966, 991, 1040
BsmAI GTCTC 1 cut(s) 642
BsmFI GGGAC 3 cut(s) 42, 120, 475
BsmI GAATGC 1 cut(s) 92
BsnI GGCC 4 cut(s) 41, 169, 346, 1026
Bso31I GGTCTC 1 cut(s) 642
BsoBI CYCGRG 1 cut(s) 645
Bsp119I TTCGAA 1 cut(s) 357
Bsp1286I GDGCHC 2 cut(s) 516, 1218
Bsp13I TCCGGA 1 cut(s) 615
Bsp143I GATC 5 cut(s) 5, 104, 469, 640, 889
BspACI CCGC 2 cut(s) 71, 960
BspANI GGCC 4 cut(s) 41, 169, 346, 1026
BspCNI CTCAG 1 cut(s) 621
BspEI TCCGGA 1 cut(s) 615
BspLI GGNNCC 3 cut(s) 490, 491, 1215
BspPI GGATC 4 cut(s) 112, 477, 635, 884
BspT104I TTCGAA 1 cut(s) 357
BspT107I GGYRCC 1 cut(s) 1213
BspTNI GGTCTC 1 cut(s) 642
BsrDI GCAATG 1 cut(s) 476
BsrFI RCCGGY 1 cut(s) 1210
BsrI ACTGG 1 cut(s) 54
BssAI RCCGGY 1 cut(s) 1210
BssECI CCNNGG 2 cut(s) 493, 767
BssMI GATC 5 cut(s) 5, 104, 469, 640, 889
BssNAI GTATAC 1 cut(s) 155
BssT1I CCWWGG 2 cut(s) 493, 767
Bst1107I GTATAC 1 cut(s) 155
Bst4CI ACNGT 2 cut(s) 400, 1108
Bst6I CTCTTC 2 cut(s) 578, 1044
BstAPI GCANNNNNTGC 1 cut(s) 1181
BstBI TTCGAA 1 cut(s) 357
BstC8I GCNNGC 2 cut(s) 336, 790
BstDEI CTNAG 3 cut(s) 629, 793, 803
BstENI CCTNNNNNAGG 1 cut(s) 1038
BstF5I GGATG 2 cut(s) 311, 462
BstH2I RGCGCY 1 cut(s) 803
BstHHI GCGC 3 cut(s) 256, 417, 802
BstKTI GATC 5 cut(s) 8, 107, 472, 643, 892
BstMAI GTCTC 1 cut(s) 642
BstMBI GATC 5 cut(s) 5, 104, 469, 640, 889
BstMWI GCNNNNNNNGC 2 cut(s) 711, 1181
BstNSI RCATGY 2 cut(s) 758, 1003
BstSCI CCNGG 1 cut(s) 939
BstSLI GKGCMC 1 cut(s) 1218
BstV1I GCAGC 2 cut(s) 522, 712
BstX2I RGATCY 3 cut(s) 5, 469, 889
BstYI RGATCY 3 cut(s) 5, 469, 889
BstZ17I GTATAC 1 cut(s) 155
BsuI GTATCC 1 cut(s) 491
BsuRI GGCC 4 cut(s) 41, 169, 346, 1026
BtrI CACGTC 1 cut(s) 65
BtsCI GGATG 2 cut(s) 311, 462
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 2 cut(s) 225, 1113
Cac8I GCNNGC 2 cut(s) 336, 790
CfoI GCGC 3 cut(s) 256, 417, 802
Cfr10I RCCGGY 1 cut(s) 1210
Cfr13I GGNCC 3 cut(s) 168, 345, 489
Csp6I GTAC 2 cut(s) 460, 758
CspAI ACCGGT 1 cut(s) 1210
CviAII CATG 4 cut(s) 28, 755, 911, 1000
CviQI GTAC 2 cut(s) 460, 758
DdeI CTNAG 3 cut(s) 629, 793, 803
DpnI GATC 5 cut(s) 7, 106, 471, 642, 891
DpnII GATC 5 cut(s) 5, 104, 469, 640, 889
DraI TTTAAA 1 cut(s) 1150
Eam1104I CTCTTC 2 cut(s) 578, 1044
EarI CTCTTC 2 cut(s) 578, 1044
Eco130I CCWWGG 2 cut(s) 493, 767
Eco31I GGTCTC 1 cut(s) 642
Eco32I GATATC 1 cut(s) 937
Eco47I GGWCC 1 cut(s) 489
Eco47III AGCGCT 1 cut(s) 801
Eco57I CTGAAG 4 cut(s) 20, 696, 879, 1170
Eco88I CYCGRG 1 cut(s) 645
EcoNI CCTNNNNNAGG 1 cut(s) 1038
EcoO109I RGGNCCY 2 cut(s) 168, 489
EcoRV GATATC 1 cut(s) 937
EcoT14I CCWWGG 2 cut(s) 493, 767
EcoT22I ATGCAT 1 cut(s) 880
ErhI CCWWGG 2 cut(s) 493, 767
FaeI CATG 4 cut(s) 31, 758, 914, 1003
FalI AAGNNNNNCTT 4 cut(s) 477, 509, 796, 828
FaqI GGGAC 3 cut(s) 42, 120, 475
FatI CATG 4 cut(s) 27, 754, 910, 999
FblI GTMKAC 1 cut(s) 154
Fnu4HI GCNGC 4 cut(s) 72, 536, 726, 960
FokI GGATG 2 cut(s) 298, 469
Fsp4HI GCNGC 4 cut(s) 72, 536, 726, 960
FspBI CTAG 3 cut(s) 242, 408, 948
GlaI GCGC 3 cut(s) 255, 416, 801
GluI GCNGC 4 cut(s) 72, 536, 726, 960
HaeII RGCGCY 1 cut(s) 803
HaeIII GGCC 4 cut(s) 41, 169, 346, 1026
HapII CCGG 4 cut(s) 616, 743, 941, 1211
HhaI GCGC 3 cut(s) 256, 417, 802
Hin1II CATG 4 cut(s) 31, 758, 914, 1003
Hin6I GCGC 3 cut(s) 254, 415, 800
HinP1I GCGC 3 cut(s) 254, 415, 800
HinfI GANTC 6 cut(s) 433, 555, 850, 944, 1018, 1257
HpaII CCGG 4 cut(s) 616, 743, 941, 1211
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 3 cut(s) 155, 904, 976
Hpy188I TCNGA 3 cut(s) 898, 1009, 1262
Hpy188III TCNNGA 5 cut(s) 517, 616, 647, 674, 1015
Hpy8I GTNNAC 3 cut(s) 155, 904, 976
HpyAV CCTTC 8 cut(s) 44, 95, 106, 671, 870, 903, 1034, 1075
HpyCH4III ACNGT 2 cut(s) 400, 1108
HpyCH4IV ACGT 2 cut(s) 64, 501
HpyCH4V TGCA 8 cut(s) 132, 476, 705, 821, 842, 878, 1175, 1251
HpyF10VI GCNNNNNNNGC 2 cut(s) 711, 1181
HpyF3I CTNAG 3 cut(s) 629, 793, 803
HpySE526I ACGT 2 cut(s) 64, 501
Hsp92II CATG 4 cut(s) 31, 758, 914, 1003
HspAI GCGC 3 cut(s) 254, 415, 800
KflI GGGWCCC 1 cut(s) 489
Kpn2I TCCGGA 1 cut(s) 615
Kzo9I GATC 5 cut(s) 5, 104, 469, 640, 889
LmnI GCTCC 1 cut(s) 95
Lsp1109I GCAGC 2 cut(s) 522, 712
LweI GCATC 3 cut(s) 808, 946, 971
MaeI CTAG 3 cut(s) 242, 408, 948
MaeII ACGT 2 cut(s) 64, 501
MaeIII GTNAC 1 cut(s) 750
MalI GATC 5 cut(s) 7, 106, 471, 642, 891
MboI GATC 5 cut(s) 5, 104, 469, 640, 889
MboII GAAGA 6 cut(s) 95, 110, 595, 707, 944, 1061
MfeI CAATTG 2 cut(s) 837, 854
MflI RGATCY 3 cut(s) 5, 469, 889
MhlI GDGCHC 2 cut(s) 516, 1218
MluCI AATT 4 cut(s) 609, 837, 854, 1081
MlyI GAGTC 2 cut(s) 953, 1012
MmeI TCCRAC 1 cut(s) 1231
Mph1103I ATGCAT 1 cut(s) 880
MroI TCCGGA 1 cut(s) 615
MroXI GAANNNNTTC 1 cut(s) 609
MseI TTAA 4 cut(s) 504, 1085, 1149, 1233
MslI CAYNNNNRTG 2 cut(s) 242, 909
MspI CCGG 4 cut(s) 616, 743, 941, 1211
MspR9I CCNGG 1 cut(s) 941
MunI CAATTG 2 cut(s) 837, 854
Mva1269I GAATGC 1 cut(s) 92
MwoI GCNNNNNNNGC 2 cut(s) 711, 1181
NciI CCSGG 1 cut(s) 941
NdeII GATC 5 cut(s) 5, 104, 469, 640, 889
NlaIII CATG 4 cut(s) 31, 758, 914, 1003
NlaIV GGNNCC 3 cut(s) 490, 491, 1215
NmuCI GTSAC 1 cut(s) 750
NsiI ATGCAT 1 cut(s) 880
NspI RCATGY 2 cut(s) 758, 1003
NspV TTCGAA 1 cut(s) 357
PaeR7I CTCGAG 1 cut(s) 645
PciI ACATGT 1 cut(s) 754
PctI GAATGC 1 cut(s) 92
PdmI GAANNNNTTC 1 cut(s) 609
PfeI GAWTC 4 cut(s) 433, 555, 850, 1257
PflMI CCANNNNNTGG 1 cut(s) 565
PfoI TCCNGGA 1 cut(s) 939
PinAI ACCGGT 1 cut(s) 1210
PkrI GCNGC 4 cut(s) 73, 537, 727, 961
PleI GAGTC 2 cut(s) 952, 1012
PpsI GAGTC 2 cut(s) 952, 1012
PpuMI RGGWCCY 1 cut(s) 489
PscI ACATGT 1 cut(s) 754
Psp5II RGGWCCY 1 cut(s) 489
PspN4I GGNNCC 3 cut(s) 490, 491, 1215
PspPI GGNCC 3 cut(s) 168, 345, 489
PspPPI RGGWCCY 1 cut(s) 489
PsrI GAACNNNNNNTAC 2 cut(s) 183, 215
PsuI RGATCY 3 cut(s) 5, 469, 889
RsaI GTAC 2 cut(s) 461, 759
RsaNI GTAC 2 cut(s) 460, 758
RseI CAYNNNNRTG 2 cut(s) 242, 909
SaqAI TTAA 4 cut(s) 504, 1085, 1149, 1233
SatI GCNGC 4 cut(s) 72, 536, 726, 960
Sau3AI GATC 5 cut(s) 5, 104, 469, 640, 889
Sau96I GGNCC 3 cut(s) 168, 345, 489
SchI GAGTC 2 cut(s) 953, 1012
ScrFI CCNGG 1 cut(s) 941
SduI GDGCHC 2 cut(s) 516, 1218
SfaNI GCATC 3 cut(s) 808, 946, 971
Sfr274I CTCGAG 1 cut(s) 645
SfuI TTCGAA 1 cut(s) 357
SinI GGWCC 1 cut(s) 489
SlaI CTCGAG 1 cut(s) 645
SmiMI CAYNNNNRTG 2 cut(s) 242, 909
SmlI CTYRAG 3 cut(s) 515, 645, 1020
SmoI CTYRAG 3 cut(s) 515, 645, 1020
Sse9I AATT 4 cut(s) 609, 837, 854, 1081
SsiI CCGC 2 cut(s) 71, 960
SspMI CTAG 3 cut(s) 242, 408, 948
StyD4I CCNGG 1 cut(s) 939
StyI CCWWGG 2 cut(s) 493, 767
TaaI ACNGT 2 cut(s) 400, 1108
TaiI ACGT 2 cut(s) 67, 504
TaqI TCGA 2 cut(s) 357, 646
TaqII GACCGA 1 cut(s) 1129
TasI AATT 4 cut(s) 609, 837, 854, 1081
TatI WGTACW 2 cut(s) 459, 757
TauI GCSGC 2 cut(s) 74, 962
TfiI GAWTC 4 cut(s) 433, 555, 850, 1257
Tru1I TTAA 4 cut(s) 504, 1085, 1149, 1233
Tru9I TTAA 4 cut(s) 504, 1085, 1149, 1233
TscAI CASTG 2 cut(s) 232, 1113
TseFI GTSAC 1 cut(s) 750
TseI GCWGC 2 cut(s) 535, 725
Tsp45I GTSAC 1 cut(s) 750
TspDTI ATGAA 7 cut(s) 545, 562, 618, 708, 899, 1053, 1125
TspRI CASTG 2 cut(s) 232, 1113
Van91I CCANNNNNTGG 1 cut(s) 565
VpaK11BI GGWCC 1 cut(s) 489
XagI CCTNNNNNAGG 1 cut(s) 1038
XapI RAATTY 1 cut(s) 1081
XceI RCATGY 2 cut(s) 758, 1003
XhoI CTCGAG 1 cut(s) 645
XmiI GTMKAC 1 cut(s) 154
XmnI GAANNNNTTC 1 cut(s) 609
XspI CTAG 3 cut(s) 242, 408, 948
Zsp2I ATGCAT 1 cut(s) 880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.