Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8264011.1

Orthogroup ID

OG0008281

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 814

Gene Structure 814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8264011.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 613 bp

ctccattgaggacggttcgtggaaggaggtggacgtttgcagtcccttaaaatctgatagtaaactgaagcacaagcccttgaatgcttttagagttgtaaggggtgttctatgtttggtggtgtttctttccactgctttcaccattctagtctgttttgcgccggtggtagctgttttgttgcgactttttagcatacattacagcagaaaagcaacatcctttctatttgctaggtggctggctctctggccctttctatttgaaaagatcaacgggacgaacgtggttttttcgggcgatactgtcccacctagagagcgcattttgattattgcgaatcataaaactgaggtggattggatgtacttgtgggatcttgcattgcgaaaagggtccctcggatatgttaaatatgtgctcaagagcagcttgatgaagctgcctgttttcggttgggggttccacgttctggagttcattcctttgaagaggaagtgggaagttgatgaaccaattctccggaaaatgctattaagttttgctgatcctcgggaccctctctggctttctatttttcctgaaggaactgattacgagtactactactta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransf_C Acyltransferase

Protein Analysis

204

Amino Acids

23.72

Weight (kDa)

9.2

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75020 AT1G75020
fragaria_vesca	FvH4_2g40310 FvH4_2g40310
malus_domestica	MD08G1036500.v1.1
prunus_persica	Prupe.1G383800_v2.0.a1 Prupe.1G383800_v2.0.a1 Prupe.1G383800_v2.0.a1 Prupe.1G383800_v2.0.a1
pyrus_communis	pycom08g02920 pycom15g02850
rosa_chinensis	RchiOBHm_Chr6g0300431
rosa_laevigata	RLG00000011338
rosa_multiflora	Rmu_co8264011.1_g000001 Rmu_sc0003793.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167790
rosa_rugosa	Rorug06G0295900 Rorug06G0296000
rosa_samantha	Rh6AG408700 Rh6BG415900 Rh6CG423400 Rh6DG409000
rosa_wichuraiana	Rw6G035750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	473
AccIII	TCCGGA	1 cut(s)	523
AclWI	GGATC	2 cut(s)	385, 543
AcuI	CTGAAG	2 cut(s)	87, 604
AfaI	GTAC	2 cut(s)	369, 603
AfiI	CCNNNNNNNGG	2 cut(s)	453, 473
AgsI	TTSAA	3 cut(s)	83, 267, 491
AloI	GAACNNNNNNTCC	2 cut(s)	505, 537
AluBI	AGCT	3 cut(s)	174, 433, 443
AluI	AGCT	3 cut(s)	174, 433, 443
Alw21I	GWGCWC	1 cut(s)	424
AlwI	GGATC	2 cut(s)	385, 543
Ama87I	CYCGRG	1 cut(s)	553
Aor13HI	TCCGGA	1 cut(s)	523
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	2 cut(s)	430, 443
Asp700I	GAANNNNTTC	1 cut(s)	517
AspLEI	GCGC	2 cut(s)	164, 325
AspS9I	GGNCC	3 cut(s)	253, 397, 557
AsuHPI	GGTGA	1 cut(s)	134
AvaI	CYCGRG	1 cut(s)	553
AvaII	GGWCC	2 cut(s)	397, 557
Bbv12I	GWGCWC	1 cut(s)	424
BbvI	GCAGC	2 cut(s)	430, 442
BfaI	CTAG	3 cut(s)	150, 235, 316
BisI	GCNGC	2 cut(s)	431, 444
BlsI	GCNGC	2 cut(s)	432, 445
BmcAI	AGTACT	1 cut(s)	603
Bme18I	GGWCC	2 cut(s)	397, 557
BmeT110I	CYCGRG	1 cut(s)	553
BmgT120I	GGNCC	3 cut(s)	253, 397, 557
BmiI	GGNNCC	5 cut(s)	398, 399, 465, 558, 559
BpmI	CTGGAG	1 cut(s)	495
BpuEI	CTTGAG	1 cut(s)	408
BsaJI	CCNNGG	2 cut(s)	401, 552
BsaWI	WCCGGW	1 cut(s)	523
BsaXI	ACNNNNNCTCC	2 cut(s)	505, 535
Bsc4I	CCNNNNNNNGG	2 cut(s)	453, 473
Bse118I	RCCGGY	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	384
BseAI	TCCGGA	1 cut(s)	523
BseDI	CCNNGG	2 cut(s)	401, 552
BseGI	GGATG	2 cut(s)	219, 370
BseLI	CCNNNNNNNGG	2 cut(s)	453, 473
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	1 cut(s)	343
BseXI	GCAGC	2 cut(s)	430, 442
BshFI	GGCC	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	424
BsiHKCI	CYCGRG	1 cut(s)	553
BsiSI	CCGG	2 cut(s)	165, 524
BslFI	GGGAC	5 cut(s)	28, 293, 294, 383, 570
BslI	CCNNNNNNNGG	2 cut(s)	453, 473
BsmFI	GGGAC	5 cut(s)	28, 293, 294, 383, 570
BsmI	GAATGC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	254
BsoBI	CYCGRG	1 cut(s)	553
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp13I	TCCGGA	1 cut(s)	523
Bsp143I	GATC	3 cut(s)	271, 377, 548
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	1 cut(s)	344
BspEI	TCCGGA	1 cut(s)	523
BspLI	GGNNCC	5 cut(s)	398, 399, 465, 558, 559
BspPI	GGATC	2 cut(s)	385, 543
BsrDI	GCAATG	1 cut(s)	384
BsrFI	RCCGGY	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	2 cut(s)	401, 552
BssMI	GATC	3 cut(s)	271, 377, 548
Bst4CI	ACNGT	2 cut(s)	15, 308
Bst6I	CTCTTC	1 cut(s)	486
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	1 cut(s)	352
BstF5I	GGATG	2 cut(s)	219, 370
BstHHI	GCGC	2 cut(s)	164, 325
BstKTI	GATC	3 cut(s)	274, 380, 551
BstMBI	GATC	3 cut(s)	271, 377, 548
BstV1I	GCAGC	2 cut(s)	430, 442
BstX2I	RGATCY	1 cut(s)	377
BstYI	RGATCY	1 cut(s)	377
BsuRI	GGCC	1 cut(s)	254
BtsCI	GGATG	2 cut(s)	219, 370
BtsI	GCAGTG	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	133
Cac8I	GCNNGC	1 cut(s)	244
CfoI	GCGC	2 cut(s)	164, 325
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	3 cut(s)	253, 397, 557
Csp6I	GTAC	2 cut(s)	368, 602
CviJI	RGCY	8 cut(s)	77, 174, 242, 246, 254, 433, 443, 569
CviKI_1	RGCY	8 cut(s)	77, 174, 242, 246, 254, 433, 443, 569
CviQI	GTAC	2 cut(s)	368, 602
DdeI	CTNAG	1 cut(s)	352
DpnI	GATC	3 cut(s)	273, 379, 550
DpnII	GATC	3 cut(s)	271, 377, 548
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
Eco47I	GGWCC	2 cut(s)	397, 557
Eco57I	CTGAAG	2 cut(s)	87, 604
Eco88I	CYCGRG	1 cut(s)	553
EcoO109I	RGGNCCY	2 cut(s)	397, 557
FaiI	YATR	5 cut(s)	113, 198, 346, 409, 418
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FaqI	GGGAC	5 cut(s)	28, 293, 294, 383, 570
Fnu4HI	GCNGC	2 cut(s)	431, 444
FokI	GGATG	2 cut(s)	206, 377
Fsp4HI	GCNGC	2 cut(s)	431, 444
FspBI	CTAG	3 cut(s)	150, 235, 316
GlaI	GCGC	2 cut(s)	163, 324
GluI	GCNGC	2 cut(s)	431, 444
GsuI	CTGGAG	1 cut(s)	495
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	2 cut(s)	165, 524
HhaI	GCGC	2 cut(s)	164, 325
Hin6I	GCGC	2 cut(s)	162, 323
HinP1I	GCGC	2 cut(s)	162, 323
HinfI	GANTC	1 cut(s)	341
HpaII	CCGG	2 cut(s)	165, 524
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	2 cut(s)	32, 63
Hpy188I	TCNGA	2 cut(s)	56, 405
Hpy188III	TCNNGA	5 cut(s)	425, 474, 524, 555, 582
Hpy8I	GTNNAC	2 cut(s)	32, 63
HpyAV	CCTTC	2 cut(s)	17, 579
HpyCH4III	ACNGT	2 cut(s)	15, 308
HpyCH4IV	ACGT	3 cut(s)	34, 286, 469
HpyCH4V	TGCA	2 cut(s)	40, 384
HpyF3I	CTNAG	1 cut(s)	352
HpySE526I	ACGT	3 cut(s)	34, 286, 469
HspAI	GCGC	2 cut(s)	162, 323
KflI	GGGWCCC	2 cut(s)	397, 557
Kpn2I	TCCGGA	1 cut(s)	523
Kzo9I	GATC	3 cut(s)	271, 377, 548
LpnPI	CCDG	8 cut(s)	178, 228, 236, 459, 460, 537, 551, 595
Lsp1109I	GCAGC	2 cut(s)	430, 442
MaeI	CTAG	3 cut(s)	150, 235, 316
MaeII	ACGT	3 cut(s)	34, 286, 469
MalI	GATC	3 cut(s)	273, 379, 550
MboI	GATC	3 cut(s)	271, 377, 548
MboII	GAAGA	1 cut(s)	503
MflI	RGATCY	1 cut(s)	377
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	1 cut(s)	517
MnlI	CCTC	6 cut(s)	20, 347, 411, 487, 562, 571
MroI	TCCGGA	1 cut(s)	523
MroXI	GAANNNNTTC	1 cut(s)	517
MseI	TTAA	3 cut(s)	48, 412, 537
MspI	CCGG	2 cut(s)	165, 524
Mva1269I	GAATGC	1 cut(s)	89
NdeII	GATC	3 cut(s)	271, 377, 548
NlaIV	GGNNCC	5 cut(s)	398, 399, 465, 558, 559
PcsI	WCGNNNNNNNCGW	1 cut(s)	283
PctI	GAATGC	1 cut(s)	89
PdmI	GAANNNNTTC	1 cut(s)	517
PfeI	GAWTC	1 cut(s)	341
PflMI	CCANNNNNTGG	1 cut(s)	473
PkrI	GCNGC	2 cut(s)	432, 445
PpuMI	RGGWCCY	2 cut(s)	397, 557
Psp5II	RGGWCCY	2 cut(s)	397, 557
PspN4I	GGNNCC	5 cut(s)	398, 399, 465, 558, 559
PspPI	GGNCC	3 cut(s)	253, 397, 557
PspPPI	RGGWCCY	2 cut(s)	397, 557
PsrI	GAACNNNNNNTAC	2 cut(s)	91, 123
PsuI	RGATCY	1 cut(s)	377
RsaI	GTAC	2 cut(s)	369, 603
RsaNI	GTAC	2 cut(s)	368, 602
SaqAI	TTAA	3 cut(s)	48, 412, 537
SatI	GCNGC	2 cut(s)	431, 444
Sau3AI	GATC	3 cut(s)	271, 377, 548
Sau96I	GGNCC	3 cut(s)	253, 397, 557
ScaI	AGTACT	1 cut(s)	603
SduI	GDGCHC	1 cut(s)	424
SgrAI	CRCCGGYG	1 cut(s)	164
SinI	GGWCC	2 cut(s)	397, 557
SmlI	CTYRAG	1 cut(s)	423
SmoI	CTYRAG	1 cut(s)	423
Sse9I	AATT	1 cut(s)	517
SspMI	CTAG	3 cut(s)	150, 235, 316
TaaI	ACNGT	2 cut(s)	15, 308
TaiI	ACGT	3 cut(s)	37, 289, 472
TasI	AATT	1 cut(s)	517
TatI	WGTACW	2 cut(s)	367, 601
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	3 cut(s)	48, 412, 537
Tru9I	TTAA	3 cut(s)	48, 412, 537
TscAI	CASTG	1 cut(s)	140
TseI	GCWGC	2 cut(s)	430, 443
TspDTI	ATGAA	3 cut(s)	453, 470, 526
TspRI	CASTG	1 cut(s)	140
Van91I	CCANNNNNTGG	1 cut(s)	473
VpaK11BI	GGWCC	2 cut(s)	397, 557
XmnI	GAANNNNTTC	1 cut(s)	517
XspI	CTAG	3 cut(s)	150, 235, 316
ZrmI	AGTACT	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.