Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0008281

Physical Location & Seq

Genomic Coordinates Reverse (-)

2682285 .. 2686302

Gene Structure 4018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1036500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGATGTTTGCAGTCCCTTGAAACCAGATAGTAAACTAAAGCACAGGCCTTTGTCTCCTCTTAGGGTTGTGAGGGGTATCTTATGTTTAGTAGTATTTCTCTCGACTGCGTTCACGATTCTTGTGTGTTTTGCTCCCATAATTGCTCTATTATTGCGCCCTTTGAGCATACATATAAGCAGAACAGCAACCTCCTTATTCTTTGGCATTTGGCTGGCCTTGTGGCCTTTCCTGTTTGAGAAGATCAACGGCACGAAAGTGGTTTTTTCTGGAGACACCGTGCCCCCTAAAGAACGGACTCTCCTCATTGCCAACCATAAAACCGAGGTTGATTGGATGTACTTGTGGGATCTTGCATTGCGAAAAGGGTCTCTTGGACACATCAAGTATGTGCTCAAGAGCAGCCTGATGAAGCTGCCAGTATTCGGGTGGGGATTTCACATTTTAGAGTTCATTCCTTTGAAGAGGAAGTGGGAAGCTGATGAACCGGTTATGCGGAAAATGCTTTCGTCATTTGCTGATCCTGCAGACCCTCTCTGGCTTGCCATTTTTCCTGAAGGAACTGATTATAATGAAGAAAAATGCAAAAAGAGTCAGGTATTTGCTGCTGAAAATGGACTTCCTGTACTGTCACATGTGCTACTTCCAAGAACTAAAGGCTTTTGTGCTTGCTTGGAAGCTCTAAGAAGTTCTTTGGATGCAGTTTATGACTTGACTATCACATACAAGAATCAATGCCCTTCGTTTCTAGACAATGCGTTTGGCGTGGATCCATCAGAAGTTCACATACATGTTCGGCGAATCCCTATTGAAGAGATCCCTGCTTCTAATGCCGATGCAGCCTCTTGGTTAACGGAAGCATTCCTGCTCAAGGACAACTTACTTTCCGATTTCAGCGATCAAGGGCATTTCCCTAATGAAGGAGGAGAAGAAGAGCTTTCTACATTCAAGTGCTTGGTAAATTTCATGTTCGTAATTGTTTTGACTATCATGCTGATTTACCTAGCCATTTTTTCATCCGTCTGGTTTAAAATATACATTGGTTTATCATGTGGGTACCTTGCCACAGCTACTTATTTTGATTTTCATCCGATGCCAATTTTAGACTTTGTTCAAGCAACATGTGTTTGCAATAGACCAAGAATTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransf_C Acyltransferase

Protein Analysis

384

Amino Acids

43.36

Weight (kDa)

6.56

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	87 - 222	9.1e-17	Acyltransferase
Acyltransf_C	PF16076	255 - 324	2.9e-16	Acyltransferase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75020 AT1G75020
fragaria_vesca	FvH4_2g40310 FvH4_2g40310
malus_domestica	MD08G1036500.v1.1
prunus_persica	Prupe.1G383800_v2.0.a1 Prupe.1G383800_v2.0.a1 Prupe.1G383800_v2.0.a1 Prupe.1G383800_v2.0.a1
pyrus_communis	pycom08g02920 pycom15g02850
rosa_chinensis	RchiOBHm_Chr6g0300431
rosa_laevigata	RLG00000011338
rosa_multiflora	Rmu_co8264011.1_g000001 Rmu_sc0003793.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167790
rosa_rugosa	Rorug06G0295900 Rorug06G0296000
rosa_samantha	Rh6AG408700 Rh6BG415900 Rh6CG423400 Rh6DG409000
rosa_wichuraiana	Rw6G035750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	570
Acc65I	GGTACC	1 cut(s)	1056
AccB1I	GGYRCC	1 cut(s)	1056
AciI	CCGC	1 cut(s)	496
AclWI	GGATC	5 cut(s)	357, 515, 764, 777, 811
AcsI	RAATTY	1 cut(s)	961
AcuI	CTGAAG	1 cut(s)	576
AfaI	GTAC	3 cut(s)	341, 627, 1058
AfiI	CCNNNNNNNGG	3 cut(s)	425, 871, 920
AflIII	ACRYGT	3 cut(s)	634, 790, 1121
AgeI	ACCGGT	1 cut(s)	487
AgsI	TTSAA	6 cut(s)	22, 463, 812, 949, 1115, 1148
AleI	CACNNNNGTG	1 cut(s)	257
AloI	GAACNNNNNNTCC	2 cut(s)	285, 317
AluBI	AGCT	5 cut(s)	415, 479, 680, 937, 1070
AluI	AGCT	5 cut(s)	415, 479, 680, 937, 1070
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	3 cut(s)	60, 267, 375
AlwI	GGATC	5 cut(s)	357, 515, 764, 777, 811
AoxI	GGCC	3 cut(s)	47, 216, 224
ApeKI	GCWGC	4 cut(s)	402, 415, 605, 839
ApoI	RAATTY	1 cut(s)	961
ArsI	GACNNNNNNTTYG	2 cut(s)	743, 775
AsiGI	ACCGGT	1 cut(s)	487
Asp718I	GGTACC	1 cut(s)	1056
AspLEI	GCGC	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	285
BamHI	GGATCC	1 cut(s)	769
BanI	GGYRCC	1 cut(s)	1056
BarI	GAAGNNNNNNTAC	2 cut(s)	771, 803
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	4 cut(s)	402, 414, 592, 851
BccI	CCATC	1 cut(s)	781
BceAI	ACGGC	1 cut(s)	265
BcoDI	GTCTC	3 cut(s)	60, 267, 375
BfaI	CTAG	2 cut(s)	749, 1004
BfmI	CTRYAG	1 cut(s)	525
BisI	GCNGC	4 cut(s)	403, 416, 606, 840
BlsI	GCNGC	4 cut(s)	404, 417, 607, 841
BmiI	GGNNCC	2 cut(s)	771, 1058
BmsI	GCATC	3 cut(s)	688, 826, 1083
BpmI	CTGGAG	1 cut(s)	291
BpuEI	CTTGAG	2 cut(s)	380, 854
BsaBI	GATNNNNATC	1 cut(s)	1086
BsaI	GGTCTC	1 cut(s)	375
BsaJI	CCNNGG	1 cut(s)	324
BsaWI	WCCGGW	1 cut(s)	487
BsaXI	ACNNNNNCTCC	4 cut(s)	264, 285, 294, 315
Bsc4I	CCNNNNNNNGG	3 cut(s)	425, 871, 920
Bse118I	RCCGGY	1 cut(s)	487
Bse1I	ACTGG	1 cut(s)	419
Bse3DI	GCAATG	2 cut(s)	306, 356
Bse8I	GATNNNNATC	1 cut(s)	1086
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	5 cut(s)	10, 342, 703, 1016, 1087
BseJI	GATNNNNATC	1 cut(s)	1086
BseLI	CCNNNNNNNGG	3 cut(s)	425, 871, 920
BseMI	GCAATG	2 cut(s)	306, 356
BseNI	ACTGG	1 cut(s)	419
BseRI	GAGGAG	3 cut(s)	48, 293, 939
BseSI	GKGCMC	1 cut(s)	285
BseXI	GCAGC	4 cut(s)	402, 414, 592, 851
BshFI	GGCC	3 cut(s)	49, 218, 226
BshNI	GGYRCC	1 cut(s)	1056
BshTI	ACCGGT	1 cut(s)	487
BsiHKAI	GWGCWC	1 cut(s)	396
BsiSI	CCGG	1 cut(s)	488
BslI	CCNNNNNNNGG	3 cut(s)	425, 871, 920
BsmAI	GTCTC	3 cut(s)	60, 267, 375
BsmI	GAATGC	1 cut(s)	860
BsnI	GGCC	3 cut(s)	49, 218, 226
Bso31I	GGTCTC	1 cut(s)	375
Bsp1286I	GDGCHC	2 cut(s)	285, 396
Bsp143I	GATC	6 cut(s)	243, 349, 520, 769, 816, 898
BspACI	CCGC	1 cut(s)	496
BspANI	GGCC	3 cut(s)	49, 218, 226
BspLI	GGNNCC	2 cut(s)	771, 1058
BspMAI	CTGCAG	1 cut(s)	529
BspPI	GGATC	5 cut(s)	357, 515, 764, 777, 811
BspQI	GCTCTTC	1 cut(s)	927
BspT107I	GGYRCC	1 cut(s)	1056
BspTNI	GGTCTC	1 cut(s)	375
BsrDI	GCAATG	2 cut(s)	306, 356
BsrFI	RCCGGY	1 cut(s)	487
BsrI	ACTGG	1 cut(s)	419
BssAI	RCCGGY	1 cut(s)	487
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	6 cut(s)	243, 349, 520, 769, 816, 898
Bst4CI	ACNGT	2 cut(s)	280, 630
Bst6I	CTCTTC	3 cut(s)	458, 807, 927
BstC8I	GCNNGC	3 cut(s)	216, 543, 670
BstDEI	CTNAG	2 cut(s)	62, 683
BstENI	CCTNNNNNAGG	2 cut(s)	869, 918
BstF5I	GGATG	5 cut(s)	10, 342, 703, 1016, 1087
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	6 cut(s)	246, 352, 523, 772, 819, 901
BstMAI	GTCTC	3 cut(s)	60, 267, 375
BstMBI	GATC	6 cut(s)	243, 349, 520, 769, 816, 898
BstMWI	GCNNNNNNNGC	5 cut(s)	165, 502, 524, 830, 839
BstNSI	RCATGY	3 cut(s)	638, 794, 1125
BstSFI	CTRYAG	1 cut(s)	525
BstSLI	GKGCMC	1 cut(s)	285
BstV1I	GCAGC	4 cut(s)	402, 414, 592, 851
BstX2I	RGATCY	3 cut(s)	349, 769, 816
BstYI	RGATCY	3 cut(s)	349, 769, 816
BsuRI	GGCC	3 cut(s)	49, 218, 226
BtsCI	GGATG	5 cut(s)	10, 342, 703, 1016, 1087
Cac8I	GCNNGC	3 cut(s)	216, 543, 670
CfoI	GCGC	1 cut(s)	159
Cfr10I	RCCGGY	1 cut(s)	487
Csp6I	GTAC	3 cut(s)	340, 626, 1057
CspAI	ACCGGT	1 cut(s)	487
CviAII	CATG	6 cut(s)	635, 791, 967, 991, 1050, 1122
CviQI	GTAC	3 cut(s)	340, 626, 1057
DdeI	CTNAG	2 cut(s)	62, 683
DpnI	GATC	6 cut(s)	245, 351, 522, 771, 818, 900
DpnII	GATC	6 cut(s)	243, 349, 520, 769, 816, 898
DraI	TTTAAA	1 cut(s)	1030
Eam1104I	CTCTTC	3 cut(s)	458, 807, 927
EarI	CTCTTC	3 cut(s)	458, 807, 927
Eco147I	AGGCCT	1 cut(s)	49
Eco31I	GGTCTC	1 cut(s)	375
Eco57I	CTGAAG	1 cut(s)	576
EcoNI	CCTNNNNNAGG	2 cut(s)	869, 918
FaeI	CATG	6 cut(s)	638, 794, 970, 994, 1053, 1125
FalI	AAGNNNNNCTT	8 cut(s)	357, 389, 676, 708, 863, 895, 921, 953
FatI	CATG	6 cut(s)	634, 790, 966, 990, 1049, 1121
Fnu4HI	GCNGC	4 cut(s)	403, 416, 606, 840
FokI	GGATG	5 cut(s)	17, 349, 710, 1003, 1074
Fsp4HI	GCNGC	4 cut(s)	403, 416, 606, 840
FspBI	CTAG	2 cut(s)	749, 1004
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	4 cut(s)	403, 416, 606, 840
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	3 cut(s)	49, 218, 226
HapII	CCGG	1 cut(s)	488
HhaI	GCGC	1 cut(s)	159
Hin1II	CATG	6 cut(s)	638, 794, 970, 994, 1053, 1125
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HincII	GTYRAC	1 cut(s)	852
HindII	GTYRAC	1 cut(s)	852
HinfI	GANTC	5 cut(s)	118, 298, 592, 730, 801
HpaI	GTTAAC	1 cut(s)	852
HpaII	CCGG	1 cut(s)	488
Hpy166II	GTNNAC	4 cut(s)	35, 114, 784, 852
Hpy188I	TCNGA	3 cut(s)	778, 889, 1092
Hpy188III	TCNNGA	6 cut(s)	103, 115, 270, 397, 554, 749
Hpy8I	GTNNAC	4 cut(s)	35, 114, 784, 852
HpyAV	CCTTC	3 cut(s)	551, 750, 914
HpyCH4III	ACNGT	2 cut(s)	280, 630
HpyCH4V	TGCA	7 cut(s)	12, 356, 527, 585, 701, 839, 1131
HpyF10VI	GCNNNNNNNGC	5 cut(s)	165, 502, 524, 830, 839
HpyF3I	CTNAG	2 cut(s)	62, 683
Hsp92II	CATG	6 cut(s)	638, 794, 970, 994, 1053, 1125
HspAI	GCGC	1 cut(s)	157
KpnI	GGTACC	1 cut(s)	1060
KspAI	GTTAAC	1 cut(s)	852
Kzo9I	GATC	6 cut(s)	243, 349, 520, 769, 816, 898
LguI	GCTCTTC	1 cut(s)	927
LmnI	GCTCC	1 cut(s)	139
Lsp1109I	GCAGC	4 cut(s)	402, 414, 592, 851
LweI	GCATC	3 cut(s)	688, 826, 1083
MaeI	CTAG	2 cut(s)	749, 1004
MaeIII	GTNAC	1 cut(s)	630
MalI	GATC	6 cut(s)	245, 351, 522, 771, 818, 900
MboI	GATC	6 cut(s)	243, 349, 520, 769, 816, 898
MboII	GAAGA	6 cut(s)	253, 475, 587, 824, 941, 944
MflI	RGATCY	3 cut(s)	349, 769, 816
MhlI	GDGCHC	2 cut(s)	285, 396
MluCI	AATT	5 cut(s)	141, 961, 975, 1098, 1143
MlyI	GAGTC	2 cut(s)	292, 601
MnlI	CCTC	9 cut(s)	66, 69, 202, 314, 319, 459, 543, 853, 917
MseI	TTAA	2 cut(s)	851, 1029
MslI	CAYNNNNRTG	3 cut(s)	257, 789, 949
MspI	CCGG	1 cut(s)	488
Mva1269I	GAATGC	1 cut(s)	860
MwoI	GCNNNNNNNGC	5 cut(s)	165, 502, 524, 830, 839
NdeII	GATC	6 cut(s)	243, 349, 520, 769, 816, 898
NlaIII	CATG	6 cut(s)	638, 794, 970, 994, 1053, 1125
NlaIV	GGNNCC	2 cut(s)	771, 1058
NmuCI	GTSAC	1 cut(s)	630
NspI	RCATGY	3 cut(s)	638, 794, 1125
OliI	CACNNNNGTG	1 cut(s)	257
PceI	AGGCCT	1 cut(s)	49
PciI	ACATGT	3 cut(s)	634, 790, 1121
PciSI	GCTCTTC	1 cut(s)	927
PctI	GAATGC	1 cut(s)	860
PfeI	GAWTC	3 cut(s)	118, 730, 801
PinAI	ACCGGT	1 cut(s)	487
PkrI	GCNGC	4 cut(s)	404, 417, 607, 841
PleI	GAGTC	2 cut(s)	292, 600
PpsI	GAGTC	2 cut(s)	292, 600
PscI	ACATGT	3 cut(s)	634, 790, 1121
PsiI	TTATAA	1 cut(s)	570
PspN4I	GGNNCC	2 cut(s)	771, 1058
PstI	CTGCAG	1 cut(s)	529
PsuI	RGATCY	3 cut(s)	349, 769, 816
RsaI	GTAC	3 cut(s)	341, 627, 1058
RsaNI	GTAC	3 cut(s)	340, 626, 1057
RseI	CAYNNNNRTG	3 cut(s)	257, 789, 949
SapI	GCTCTTC	1 cut(s)	927
SaqAI	TTAA	2 cut(s)	851, 1029
SatI	GCNGC	4 cut(s)	403, 416, 606, 840
Sau3AI	GATC	6 cut(s)	243, 349, 520, 769, 816, 898
SchI	GAGTC	2 cut(s)	292, 601
SduI	GDGCHC	2 cut(s)	285, 396
SfaNI	GCATC	3 cut(s)	688, 826, 1083
SfcI	CTRYAG	1 cut(s)	525
SmiMI	CAYNNNNRTG	3 cut(s)	257, 789, 949
SmlI	CTYRAG	2 cut(s)	395, 869
SmoI	CTYRAG	2 cut(s)	395, 869
Sse9I	AATT	5 cut(s)	141, 961, 975, 1098, 1143
SseBI	AGGCCT	1 cut(s)	49
SsiI	CCGC	1 cut(s)	496
SspMI	CTAG	2 cut(s)	749, 1004
StuI	AGGCCT	1 cut(s)	49
TaaI	ACNGT	2 cut(s)	280, 630
TaqI	TCGA	1 cut(s)	104
TasI	AATT	5 cut(s)	141, 961, 975, 1098, 1143
TatI	WGTACW	2 cut(s)	339, 625
TfiI	GAWTC	3 cut(s)	118, 730, 801
Tru1I	TTAA	2 cut(s)	851, 1029
Tru9I	TTAA	2 cut(s)	851, 1029
TseFI	GTSAC	1 cut(s)	630
TseI	GCWGC	4 cut(s)	402, 415, 605, 839
Tsp45I	GTSAC	1 cut(s)	630
TspDTI	ATGAA	8 cut(s)	425, 442, 498, 588, 933, 955, 1005, 1076
TspGWI	ACGGA	3 cut(s)	310, 869, 1009
XagI	CCTNNNNNAGG	2 cut(s)	869, 918
XapI	RAATTY	1 cut(s)	961
XbaI	TCTAGA	1 cut(s)	748
XceI	RCATGY	3 cut(s)	638, 794, 1125
XcmI	CCANNNNNNNNNTGG	1 cut(s)	426
XspI	CTAG	2 cut(s)	749, 1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.