Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003793.1

Orthogroup ID

OG0008281

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1342

Gene Structure 1342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003793.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atgtgtttattcattcaaattccctcgttttgtttcttgtgcagtgaagaaaaatgcaaaaagagccagacatttgctgctgaaaatggacttcctgtgctgtcacatgtgctacttccaaggactaaaggtttttgtgcttgcttagaagccctaagaggttctttggatgcagtttatgacttgacaattgcatacaagaatcaatgcccttcgtttatggacaatgcatttggtgtagatccttcagaagtacacattcatgttcggcgtatcccaatggaagatatcccagagtctagcacagatgctgcatcttggttagtggacacattccatctcaaggacaacatgctgtcagatttccatactcgaggccattttcctaatgaaggaggagaagaagacatttctgcgttcaagggtttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransf_C Acyltransferase

Protein Analysis

143

Amino Acids

15.96

Weight (kDa)

5.09

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75020 AT1G75020
fragaria_vesca	FvH4_2g40310 FvH4_2g40310
malus_domestica	MD08G1036500.v1.1
prunus_persica	Prupe.1G383800_v2.0.a1 Prupe.1G383800_v2.0.a1 Prupe.1G383800_v2.0.a1 Prupe.1G383800_v2.0.a1
pyrus_communis	pycom08g02920 pycom15g02850
rosa_chinensis	RchiOBHm_Chr6g0300431
rosa_laevigata	RLG00000011338
rosa_multiflora	Rmu_co8264011.1_g000001 Rmu_sc0003793.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167790
rosa_rugosa	Rorug06G0295900 Rorug06G0296000
rosa_samantha	Rh6AG408700 Rh6BG415900 Rh6CG423400 Rh6DG409000
rosa_wichuraiana	Rw6G035750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	236
AcsI	RAATTY	1 cut(s)	18
AcuI	CTGAAG	1 cut(s)	231
AfaI	GTAC	1 cut(s)	255
AfiI	CCNNNNNNNGG	2 cut(s)	343, 392
AflIII	ACRYGT	1 cut(s)	106
AgsI	TTSAA	2 cut(s)	17, 421
AlwI	GGATC	1 cut(s)	236
AlwNI	CAGNNNCTG	1 cut(s)	311
Ama87I	CYCGRG	1 cut(s)	372
AoxI	GGCC	1 cut(s)	376
ApeKI	GCWGC	2 cut(s)	77, 311
ApoI	RAATTY	1 cut(s)	18
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
AvaI	CYCGRG	1 cut(s)	372
BbsI	GAAGAC	1 cut(s)	411
BbvI	GCAGC	2 cut(s)	64, 298
BccI	CCATC	1 cut(s)	345
BciVI	GTATCC	1 cut(s)	284
BfaI	CTAG	1 cut(s)	300
BfuI	GTATCC	1 cut(s)	284
BisI	GCNGC	2 cut(s)	78, 312
BlsI	GCNGC	2 cut(s)	79, 313
BmeT110I	CYCGRG	1 cut(s)	372
BmsI	GCATC	3 cut(s)	160, 298, 323
BpiI	GAAGAC	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	2 cut(s)	343, 392
BseDI	CCNNGG	1 cut(s)	119
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	2 cut(s)	343, 392
BseRI	GAGGAG	1 cut(s)	411
BseXI	GCAGC	2 cut(s)	64, 298
BsgI	GTGCAG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	378
BsiHKCI	CYCGRG	1 cut(s)	372
BslI	CCNNNNNNNGG	2 cut(s)	343, 392
BsnI	GGCC	1 cut(s)	378
BsoBI	CYCGRG	1 cut(s)	372
Bsp143I	GATC	1 cut(s)	241
BspANI	GGCC	1 cut(s)	378
BspPI	GGATC	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	119
BssMI	GATC	1 cut(s)	241
BssT1I	CCWWGG	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	2 cut(s)	145, 155
BstENI	CCTNNNNNAGG	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	1 cut(s)	63
BstNSI	RCATGY	2 cut(s)	110, 355
BstV1I	GCAGC	2 cut(s)	64, 298
BstV2I	GAAGAC	1 cut(s)	411
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BsuI	GTATCC	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	378
BtsCI	GGATG	1 cut(s)	175
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	49
Cac8I	GCNNGC	1 cut(s)	142
CaiI	CAGNNNCTG	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	254
CviAII	CATG	3 cut(s)	107, 263, 352
CviJI	RGCY	3 cut(s)	66, 152, 378
CviKI_1	RGCY	3 cut(s)	66, 152, 378
CviQI	GTAC	1 cut(s)	254
DdeI	CTNAG	2 cut(s)	145, 155
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	119
Eco32I	GATATC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	372
EcoNI	CCTNNNNNAGG	1 cut(s)	390
EcoRV	GATATC	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	119
EcoT22I	ATGCAT	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	119
FaeI	CATG	3 cut(s)	110, 266, 355
FaiI	YATR	7 cut(s)	108, 180, 196, 221, 264, 353, 369
FalI	AAGNNNNNCTT	2 cut(s)	148, 180
FatI	CATG	3 cut(s)	106, 262, 351
Fnu4HI	GCNGC	2 cut(s)	78, 312
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	2 cut(s)	78, 312
FspBI	CTAG	1 cut(s)	300
GluI	GCNGC	2 cut(s)	78, 312
HaeIII	GGCC	1 cut(s)	378
Hin1II	CATG	3 cut(s)	110, 266, 355
HinfI	GANTC	2 cut(s)	202, 296
Hpy166II	GTNNAC	2 cut(s)	256, 328
Hpy188I	TCNGA	2 cut(s)	250, 361
Hpy8I	GTNNAC	2 cut(s)	256, 328
HpyAV	CCTTC	3 cut(s)	222, 255, 386
HpyCH4V	TGCA	6 cut(s)	42, 57, 173, 194, 230, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	63
HpyF3I	CTNAG	2 cut(s)	145, 155
Hsp92II	CATG	3 cut(s)	110, 266, 355
Kzo9I	GATC	1 cut(s)	241
LpnPI	CCDG	3 cut(s)	80, 108, 306
Lsp1109I	GCAGC	2 cut(s)	64, 298
LweI	GCATC	3 cut(s)	160, 298, 323
MaeI	CTAG	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	102
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MboII	GAAGA	4 cut(s)	59, 296, 413, 416
MfeI	CAATTG	1 cut(s)	189
MflI	RGATCY	1 cut(s)	241
MluCI	AATT	2 cut(s)	18, 189
MlyI	GAGTC	1 cut(s)	305
MnlI	CCTC	4 cut(s)	34, 152, 368, 389
Mph1103I	ATGCAT	1 cut(s)	232
MslI	CAYNNNNRTG	1 cut(s)	261
MunI	CAATTG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	63
NdeII	GATC	1 cut(s)	241
NlaIII	CATG	3 cut(s)	110, 266, 355
NmuCI	GTSAC	1 cut(s)	102
NsiI	ATGCAT	1 cut(s)	232
NspI	RCATGY	2 cut(s)	110, 355
PaeR7I	CTCGAG	1 cut(s)	372
PciI	ACATGT	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	2 cut(s)	79, 313
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
PscI	ACATGT	1 cut(s)	106
PspXI	VCTCGAGB	1 cut(s)	372
PstNI	CAGNNNCTG	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	241
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
RseI	CAYNNNNRTG	1 cut(s)	261
SatI	GCNGC	2 cut(s)	78, 312
Sau3AI	GATC	1 cut(s)	241
SchI	GAGTC	1 cut(s)	305
SetI	ASST	2 cut(s)	133, 163
SfaNI	GCATC	3 cut(s)	160, 298, 323
Sfr274I	CTCGAG	1 cut(s)	372
SlaI	CTCGAG	1 cut(s)	372
SmiMI	CAYNNNNRTG	1 cut(s)	261
SmlI	CTYRAG	2 cut(s)	341, 372
SmoI	CTYRAG	2 cut(s)	341, 372
Sse9I	AATT	2 cut(s)	18, 189
SspMI	CTAG	1 cut(s)	300
StyI	CCWWGG	1 cut(s)	119
TaqI	TCGA	1 cut(s)	373
TasI	AATT	2 cut(s)	18, 189
TatI	WGTACW	1 cut(s)	253
TfiI	GAWTC	1 cut(s)	202
TscAI	CASTG	1 cut(s)	49
TseFI	GTSAC	1 cut(s)	102
TseI	GCWGC	2 cut(s)	77, 311
Tsp45I	GTSAC	1 cut(s)	102
TspDTI	ATGAA	2 cut(s)	251, 405
TspRI	CASTG	1 cut(s)	49
XagI	CCTNNNNNAGG	1 cut(s)	390
XapI	RAATTY	1 cut(s)	18
XceI	RCATGY	2 cut(s)	110, 355
XhoI	CTCGAG	1 cut(s)	372
XspI	CTAG	1 cut(s)	300
Zsp2I	ATGCAT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.