Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008281

Physical Location & Seq

Genomic Coordinates Reverse (-)

1761785 .. 1763021

Gene Structure 1237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g02850.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAAGATACCTGTTTTCGGTTGGGGGTTTCACATTCTAGAGTTCATCCCGTTGAAGAGGAAGTGGGAAGCTGATGAACCGGTTATGCGGAAAATGCTTTCATCATTTGCTGATCCTGCAGACCCTCTTTGGCTCGCCATTTTTCCTGAAGGAACTGATTATAATGAAGAAAAATGCAAAAAGAGTCAGTTGTTTGCTTCTGAAACTGGACTTCCTGTACTGTCATATGTGCTGCTTCCAAGAACAAAAGGCTTTTGTGCTTGCTTGGAAACTCTAAGAAGTTCTTTGGATGCAGTTTATGACTTGACGATCGCATACAAGAATCAATGCCCTTCGTTTCTAGACAATGCGTTCGGCGTGGATCCATCAGAAGTTCACATACATGTTCGGCGCATCCCTATCGAAGAGATCCCCGTTTCTAACACCGATGCAGCCTCTTGGTTAACAGAAGCATTCAGGCTCAAGGACAATCTACTGTCCGATTTTGACGATCAAGGCCATTTTCCTAATGAAGGAGGAGAAGAAGAGCTTTCTACATTCAAGTGCTTGGTAAATTTTATCTTGGTAATTGTTTTGACTATCATGCTGATTTACCTAGCCATTTTTTCATCTGTCTGGTTTAAAGTATACATCGGTTTATCATGTGCTTACCTTGCCACAGCCACTTATTTTGATTTTCAACCGATGCCAATTTTAGACTTTGTTCAAGCAACATGTGTTTGCAATAGAGCAAGAATTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransf_C Acyltransferase

Protein Analysis

248

Amino Acids

28.09

Weight (kDa)

4.85

Isoelectric Point (pI)

50.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75020 AT1G75020
fragaria_vesca	FvH4_2g40310 FvH4_2g40310
malus_domestica	MD08G1036500.v1.1
prunus_persica	Prupe.1G383800_v2.0.a1 Prupe.1G383800_v2.0.a1 Prupe.1G383800_v2.0.a1 Prupe.1G383800_v2.0.a1
pyrus_communis	pycom08g02920 pycom15g02850
rosa_chinensis	RchiOBHm_Chr6g0300431
rosa_laevigata	RLG00000011338
rosa_multiflora	Rmu_co8264011.1_g000001 Rmu_sc0003793.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167790
rosa_rugosa	Rorug06G0295900 Rorug06G0296000
rosa_samantha	Rh6AG408700 Rh6BG415900 Rh6CG423400 Rh6DG409000
rosa_wichuraiana	Rw6G035750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	162
AccI	GTMKAC	1 cut(s)	627
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	4 cut(s)	107, 356, 369, 403
AcsI	RAATTY	1 cut(s)	553
AcuI	CTGAAG	1 cut(s)	168
AfaI	GTAC	1 cut(s)	219
AfiI	CCNNNNNNNGG	2 cut(s)	17, 512
AflIII	ACRYGT	2 cut(s)	382, 713
AgeI	ACCGGT	1 cut(s)	79
AgsI	TTSAA	5 cut(s)	55, 541, 680, 707, 740
AluBI	AGCT	2 cut(s)	71, 529
AluI	AGCT	2 cut(s)	71, 529
AlwI	GGATC	4 cut(s)	107, 356, 369, 403
AoxI	GGCC	1 cut(s)	496
ApeKI	GCWGC	2 cut(s)	232, 431
ApoI	RAATTY	1 cut(s)	553
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
AsiGI	ACCGGT	1 cut(s)	79
AspLEI	GCGC	1 cut(s)	393
BamHI	GGATCC	1 cut(s)	361
BarI	GAAGNNNNNNTAC	2 cut(s)	363, 395
BbvI	GCAGC	2 cut(s)	219, 443
BccI	CCATC	1 cut(s)	373
BcgI	CGANNNNNNTGC	2 cut(s)	382, 416
BfaI	CTAG	3 cut(s)	38, 341, 596
BfmI	CTRYAG	1 cut(s)	117
BisI	GCNGC	2 cut(s)	233, 432
BlsI	GCNGC	2 cut(s)	234, 433
BmiI	GGNNCC	1 cut(s)	363
BmsI	GCATC	4 cut(s)	280, 402, 418, 675
BpuEI	CTTGAG	1 cut(s)	446
BsaWI	WCCGGW	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 512
Bse118I	RCCGGY	1 cut(s)	79
Bse1I	ACTGG	1 cut(s)	211
BseGI	GGATG	3 cut(s)	45, 295, 393
BseLI	CCNNNNNNNGG	2 cut(s)	17, 512
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	1 cut(s)	531
BseXI	GCAGC	2 cut(s)	219, 443
Bsh1285I	CGRYCG	1 cut(s)	312
BshFI	GGCC	1 cut(s)	498
BshTI	ACCGGT	1 cut(s)	79
BsiEI	CGRYCG	1 cut(s)	312
BsiSI	CCGG	1 cut(s)	80
BslI	CCNNNNNNNGG	2 cut(s)	17, 512
BsmI	GAATGC	1 cut(s)	452
BsnI	GGCC	1 cut(s)	498
Bsp143I	GATC	5 cut(s)	112, 309, 361, 408, 490
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	498
BspLI	GGNNCC	1 cut(s)	363
BspMAI	CTGCAG	1 cut(s)	121
BspPI	GGATC	4 cut(s)	107, 356, 369, 403
BspQI	GCTCTTC	1 cut(s)	519
BsrFI	RCCGGY	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	211
BssAI	RCCGGY	1 cut(s)	79
BssMI	GATC	5 cut(s)	112, 309, 361, 408, 490
BssNAI	GTATAC	1 cut(s)	628
Bst1107I	GTATAC	1 cut(s)	628
Bst4CI	ACNGT	2 cut(s)	222, 477
Bst6I	CTCTTC	3 cut(s)	50, 399, 519
BstC8I	GCNNGC	2 cut(s)	135, 262
BstDEI	CTNAG	1 cut(s)	275
BstENI	CCTNNNNNAGG	1 cut(s)	510
BstF5I	GGATG	3 cut(s)	45, 295, 393
BstHHI	GCGC	1 cut(s)	393
BstKTI	GATC	5 cut(s)	115, 312, 364, 411, 493
BstMBI	GATC	5 cut(s)	112, 309, 361, 408, 490
BstMCI	CGRYCG	1 cut(s)	312
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 116, 653
BstNSI	RCATGY	2 cut(s)	386, 717
BstSFI	CTRYAG	1 cut(s)	117
BstV1I	GCAGC	2 cut(s)	219, 443
BstX2I	RGATCY	2 cut(s)	361, 408
BstYI	RGATCY	2 cut(s)	361, 408
BstZ17I	GTATAC	1 cut(s)	628
BsuRI	GGCC	1 cut(s)	498
BtsCI	GGATG	3 cut(s)	45, 295, 393
Cac8I	GCNNGC	2 cut(s)	135, 262
CfoI	GCGC	1 cut(s)	393
Cfr10I	RCCGGY	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	218
CspAI	ACCGGT	1 cut(s)	79
CspCI	CAANNNNNGTGG	2 cut(s)	652, 687
CviAII	CATG	4 cut(s)	383, 583, 642, 714
CviJI	RGCY	9 cut(s)	71, 133, 252, 434, 460, 498, 529, 599, 662
CviKI_1	RGCY	9 cut(s)	71, 133, 252, 434, 460, 498, 529, 599, 662
CviQI	GTAC	1 cut(s)	218
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	5 cut(s)	114, 311, 363, 410, 492
DpnII	GATC	5 cut(s)	112, 309, 361, 408, 490
DraI	TTTAAA	1 cut(s)	622
Eam1104I	CTCTTC	3 cut(s)	50, 399, 519
EarI	CTCTTC	3 cut(s)	50, 399, 519
Eco57I	CTGAAG	1 cut(s)	168
EcoNI	CCTNNNNNAGG	1 cut(s)	510
FaeI	CATG	4 cut(s)	386, 586, 645, 717
FalI	AAGNNNNNCTT	4 cut(s)	268, 300, 513, 545
FatI	CATG	4 cut(s)	382, 582, 641, 713
FauNDI	CATATG	1 cut(s)	226
FblI	GTMKAC	1 cut(s)	627
Fnu4HI	GCNGC	2 cut(s)	233, 432
FokI	GGATG	3 cut(s)	32, 302, 380
Fsp4HI	GCNGC	2 cut(s)	233, 432
FspBI	CTAG	3 cut(s)	38, 341, 596
GlaI	GCGC	1 cut(s)	392
GluI	GCNGC	2 cut(s)	233, 432
HaeIII	GGCC	1 cut(s)	498
HapII	CCGG	1 cut(s)	80
HhaI	GCGC	1 cut(s)	393
Hin1II	CATG	4 cut(s)	386, 586, 645, 717
Hin6I	GCGC	1 cut(s)	391
HinP1I	GCGC	1 cut(s)	391
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HinfI	GANTC	2 cut(s)	184, 322
HpaI	GTTAAC	1 cut(s)	444
HpaII	CCGG	1 cut(s)	80
Hpy166II	GTNNAC	3 cut(s)	376, 444, 628
Hpy188I	TCNGA	3 cut(s)	202, 370, 481
Hpy188III	TCNNGA	3 cut(s)	38, 146, 341
Hpy8I	GTNNAC	3 cut(s)	376, 444, 628
HpyAV	CCTTC	3 cut(s)	143, 342, 506
HpyCH4III	ACNGT	2 cut(s)	222, 477
HpyCH4V	TGCA	5 cut(s)	119, 177, 293, 431, 723
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 116, 653
HpyF3I	CTNAG	1 cut(s)	275
Hsp92II	CATG	4 cut(s)	386, 586, 645, 717
HspAI	GCGC	1 cut(s)	391
KspAI	GTTAAC	1 cut(s)	444
Kzo9I	GATC	5 cut(s)	112, 309, 361, 408, 490
LguI	GCTCTTC	1 cut(s)	519
LpnPI	CCDG	8 cut(s)	24, 93, 129, 159, 192, 228, 442, 601
Lsp1109I	GCAGC	2 cut(s)	219, 443
LweI	GCATC	4 cut(s)	280, 402, 418, 675
MaeI	CTAG	3 cut(s)	38, 341, 596
MalI	GATC	5 cut(s)	114, 311, 363, 410, 492
MboI	GATC	5 cut(s)	112, 309, 361, 408, 490
MboII	GAAGA	6 cut(s)	16, 67, 179, 416, 533, 536
MflI	RGATCY	2 cut(s)	361, 408
MluCI	AATT	4 cut(s)	553, 567, 690, 735
MlyI	GAGTC	1 cut(s)	193
MnlI	CCTC	4 cut(s)	51, 135, 445, 509
MseI	TTAA	2 cut(s)	443, 621
MslI	CAYNNNNRTG	2 cut(s)	381, 541
MspI	CCGG	1 cut(s)	80
Mva1269I	GAATGC	1 cut(s)	452
MwoI	GCNNNNNNNGC	3 cut(s)	94, 116, 653
NdeI	CATATG	1 cut(s)	226
NdeII	GATC	5 cut(s)	112, 309, 361, 408, 490
NlaIII	CATG	4 cut(s)	386, 586, 645, 717
NlaIV	GGNNCC	1 cut(s)	363
NspI	RCATGY	2 cut(s)	386, 717
PciI	ACATGT	2 cut(s)	382, 713
PciSI	GCTCTTC	1 cut(s)	519
PctI	GAATGC	1 cut(s)	452
PfeI	GAWTC	1 cut(s)	322
PinAI	ACCGGT	1 cut(s)	79
PkrI	GCNGC	2 cut(s)	234, 433
Ple19I	CGATCG	1 cut(s)	312
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
PscI	ACATGT	2 cut(s)	382, 713
PsiI	TTATAA	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	363
PstI	CTGCAG	1 cut(s)	121
PsuI	RGATCY	2 cut(s)	361, 408
PvuI	CGATCG	1 cut(s)	312
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
RseI	CAYNNNNRTG	2 cut(s)	381, 541
SapI	GCTCTTC	1 cut(s)	519
SaqAI	TTAA	2 cut(s)	443, 621
SatI	GCNGC	2 cut(s)	233, 432
Sau3AI	GATC	5 cut(s)	112, 309, 361, 408, 490
SchI	GAGTC	1 cut(s)	193
SetI	ASST	5 cut(s)	13, 73, 531, 597, 654
SfaNI	GCATC	4 cut(s)	280, 402, 418, 675
SfcI	CTRYAG	1 cut(s)	117
SmiMI	CAYNNNNRTG	2 cut(s)	381, 541
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
Sse9I	AATT	4 cut(s)	553, 567, 690, 735
SsiI	CCGC	1 cut(s)	88
SspMI	CTAG	3 cut(s)	38, 341, 596
TaaI	ACNGT	2 cut(s)	222, 477
TaqI	TCGA	1 cut(s)	402
TasI	AATT	4 cut(s)	553, 567, 690, 735
TatI	WGTACW	1 cut(s)	217
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	2 cut(s)	443, 621
Tru9I	TTAA	2 cut(s)	443, 621
TseI	GCWGC	2 cut(s)	232, 431
TspDTI	ATGAA	7 cut(s)	17, 34, 90, 90, 180, 525, 597
XagI	CCTNNNNNAGG	1 cut(s)	510
XapI	RAATTY	1 cut(s)	553
XbaI	TCTAGA	2 cut(s)	37, 340
XceI	RCATGY	2 cut(s)	386, 717
XmiI	GTMKAC	1 cut(s)	627
XspI	CTAG	3 cut(s)	38, 341, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.