Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008281

Physical Location & Seq

Genomic Coordinates Reverse (-)

2290885 .. 2292506

Gene Structure 1622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g02920.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGTTTAGTAGTATTTCTCTCAACTGCGTTCACATTTCTTGTGTGTTTTGCTCCCATAACTGCTCTATTATTGCGCCCTTTGAGTATACGTATAAGCAGAACAGCAACCTCCTTATTCTTTGGCATTTGGCTGGCCTTGTGGCCTTTCCTGTTGATTGGATGTACTTGTGGGATCTTGCATTGCGAAAAGGGTCTCTTGGACACATCAGGTATGTGCTCAAGAGCAGCCTGATGAAGCTGCCGGTATTCGGGTGGGGATTTCACATTTTAGAGTTCATTCCTTTGAAAAGGAAGTGGGAAGCTGATGAACCGGTTATGCGGAAAATGCTTTCGTCATTTGCTGATCCTGCAGACCCTCTCTGGCTTGCCATTTTTCCTGAAGGAACTGATTATAATGAGGAAAAATGCAAAAAGAGTCAGATATTTGCTGCTGAAAATGGACTTCCTGTACTGTCACATGTGCTACTTCCAAGAACTAAAGGCTTTTGTGCTTGCTTGGAAGCTCTAAGAAGTTCTTTGGATGCAGGTTATTTACACAAAACTCCACTCTGTGATTTTCCCCACAATTTCTTCTGGAAACATTTTGAAGATTGTGTGTGCGCATGTTATACTTATATGTTCTCTGATGATCATCTAAATTGTGCTGCAGTTTATGACTTGACTATCACGTACAAGAATCAATTTCACATACATGTTCGTCGAATCCCTATTGAAGAGATCCCTGCTTCTAACGCAGATGCAGCCTCTTGGTTAACGGAAGCGTTCCTGCTCAAGGACAACTTACTTTCCAATTTCAGCGATCAAGGGCATTTCCCTAATGAAGGAGGGGAAGAAGAGCTTTCTACATTCAAGTGCTTGGTAAATTTCATGTTGGTAATTGTTTTGACTATCATGCTGATTTACCTAGCCATTTTTTCATCCGTCTGGTTTAAAATATACATCGGTTTATCATGTGGGTACCTTGCCACAGCTACTTATTTTAATTTTCAACCGATGCCAATTTTAGACTTTGTTCAAGCAACATGTGTTTGCAATAGACCAAGAATTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransf_C Acyltransferase

Protein Analysis

351

Amino Acids

40.13

Weight (kDa)

6.0

Isoelectric Point (pI)

50.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75020 AT1G75020
fragaria_vesca	FvH4_2g40310 FvH4_2g40310
malus_domestica	MD08G1036500.v1.1
prunus_persica	Prupe.1G383800_v2.0.a1 Prupe.1G383800_v2.0.a1 Prupe.1G383800_v2.0.a1 Prupe.1G383800_v2.0.a1
pyrus_communis	pycom08g02920 pycom15g02850
rosa_chinensis	RchiOBHm_Chr6g0300431
rosa_laevigata	RLG00000011338
rosa_multiflora	Rmu_co8264011.1_g000001 Rmu_sc0003793.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167790
rosa_rugosa	Rorug06G0295900 Rorug06G0296000
rosa_samantha	Rh6AG408700 Rh6BG415900 Rh6CG423400 Rh6DG409000
rosa_wichuraiana	Rw6G035750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	393
Acc16I	TGCGCA	1 cut(s)	601
Acc36I	ACCTGC	1 cut(s)	515
Acc65I	GGTACC	1 cut(s)	957
AccB1I	GGYRCC	1 cut(s)	957
AccI	GTMKAC	1 cut(s)	86
AciI	CCGC	1 cut(s)	319
AclWI	GGATC	3 cut(s)	180, 338, 712
AcsI	RAATTY	1 cut(s)	862
AcuI	CTGAAG	1 cut(s)	399
AdeI	CACNNNGTG	1 cut(s)	551
AfaI	GTAC	4 cut(s)	164, 450, 671, 959
AfiI	CCNNNNNNNGG	3 cut(s)	248, 772, 821
AflIII	ACRYGT	3 cut(s)	457, 691, 1022
AgeI	ACCGGT	1 cut(s)	310
AgsI	TTSAA	7 cut(s)	286, 587, 713, 850, 989, 1016, 1049
AluBI	AGCT	5 cut(s)	238, 302, 503, 838, 971
AluI	AGCT	5 cut(s)	238, 302, 503, 838, 971
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	1 cut(s)	198
AlwI	GGATC	3 cut(s)	180, 338, 712
AoxI	GGCC	2 cut(s)	133, 141
ApeKI	GCWGC	5 cut(s)	225, 238, 428, 644, 740
ApoI	RAATTY	1 cut(s)	862
AsiGI	ACCGGT	1 cut(s)	310
Asp718I	GGTACC	1 cut(s)	957
AspLEI	GCGC	2 cut(s)	76, 602
BanI	GGYRCC	1 cut(s)	957
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	5 cut(s)	225, 237, 415, 631, 752
BclI	TGATCA	1 cut(s)	628
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	1 cut(s)	905
BfmI	CTRYAG	2 cut(s)	348, 645
BfuAI	ACCTGC	1 cut(s)	515
BisI	GCNGC	5 cut(s)	226, 239, 429, 645, 741
BlsI	GCNGC	5 cut(s)	227, 240, 430, 646, 742
BmiI	GGNNCC	1 cut(s)	959
BmsI	GCATC	3 cut(s)	511, 727, 984
BpuEI	CTTGAG	2 cut(s)	203, 755
BsaAI	YACGTR	2 cut(s)	90, 669
BsaBI	GATNNNNATC	1 cut(s)	630
BsaI	GGTCTC	1 cut(s)	198
BsaWI	WCCGGW	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	3 cut(s)	248, 772, 821
Bse118I	RCCGGY	2 cut(s)	241, 310
Bse3DI	GCAATG	1 cut(s)	179
Bse8I	GATNNNNATC	1 cut(s)	630
BseGI	GGATG	3 cut(s)	165, 526, 917
BseJI	GATNNNNATC	1 cut(s)	630
BseLI	CCNNNNNNNGG	3 cut(s)	248, 772, 821
BseMI	GCAATG	1 cut(s)	179
BseXI	GCAGC	5 cut(s)	225, 237, 415, 631, 752
BshFI	GGCC	2 cut(s)	135, 143
BshNI	GGYRCC	1 cut(s)	957
BshTI	ACCGGT	1 cut(s)	310
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	2 cut(s)	242, 311
BslI	CCNNNNNNNGG	3 cut(s)	248, 772, 821
BsmAI	GTCTC	1 cut(s)	198
BsnI	GGCC	2 cut(s)	135, 143
Bso31I	GGTCTC	1 cut(s)	198
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	5 cut(s)	172, 343, 628, 717, 799
BspACI	CCGC	1 cut(s)	319
BspANI	GGCC	2 cut(s)	135, 143
BspLI	GGNNCC	1 cut(s)	959
BspMAI	CTGCAG	2 cut(s)	352, 649
BspMI	ACCTGC	1 cut(s)	515
BspPI	GGATC	3 cut(s)	180, 338, 712
BspQI	GCTCTTC	1 cut(s)	828
BspT107I	GGYRCC	1 cut(s)	957
BspTNI	GGTCTC	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	179
BsrFI	RCCGGY	2 cut(s)	241, 310
BssAI	RCCGGY	2 cut(s)	241, 310
BssMI	GATC	5 cut(s)	172, 343, 628, 717, 799
BssNAI	GTATAC	1 cut(s)	87
Bst1107I	GTATAC	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	453
Bst6I	CTCTTC	2 cut(s)	708, 828
BstBAI	YACGTR	2 cut(s)	90, 669
BstC8I	GCNNGC	3 cut(s)	133, 366, 493
BstDEI	CTNAG	1 cut(s)	506
BstENI	CCTNNNNNAGG	2 cut(s)	770, 819
BstF5I	GGATG	3 cut(s)	165, 526, 917
BstHHI	GCGC	2 cut(s)	76, 602
BstKTI	GATC	5 cut(s)	175, 346, 631, 720, 802
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	5 cut(s)	172, 343, 628, 717, 799
BstMWI	GCNNNNNNNGC	4 cut(s)	325, 347, 731, 740
BstNSI	RCATGY	4 cut(s)	461, 606, 695, 1026
BstSFI	CTRYAG	2 cut(s)	348, 645
BstSNI	TACGTA	1 cut(s)	90
BstV1I	GCAGC	5 cut(s)	225, 237, 415, 631, 752
BstX2I	RGATCY	2 cut(s)	172, 717
BstYI	RGATCY	2 cut(s)	172, 717
BstZ17I	GTATAC	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	135, 143
BtsCI	GGATG	3 cut(s)	165, 526, 917
BveI	ACCTGC	1 cut(s)	515
Cac8I	GCNNGC	3 cut(s)	133, 366, 493
CfoI	GCGC	2 cut(s)	76, 602
Cfr10I	RCCGGY	2 cut(s)	241, 310
Csp6I	GTAC	4 cut(s)	163, 449, 670, 958
CspAI	ACCGGT	1 cut(s)	310
CviAII	CATG	7 cut(s)	458, 603, 692, 868, 892, 951, 1023
CviQI	GTAC	4 cut(s)	163, 449, 670, 958
DdeI	CTNAG	1 cut(s)	506
DpnI	GATC	5 cut(s)	174, 345, 630, 719, 801
DpnII	GATC	5 cut(s)	172, 343, 628, 717, 799
DraI	TTTAAA	1 cut(s)	931
DraIII	CACNNNGTG	1 cut(s)	551
Eam1104I	CTCTTC	2 cut(s)	708, 828
EarI	CTCTTC	2 cut(s)	708, 828
Eco105I	TACGTA	1 cut(s)	90
Eco31I	GGTCTC	1 cut(s)	198
Eco57I	CTGAAG	1 cut(s)	399
EcoNI	CCTNNNNNAGG	2 cut(s)	770, 819
FaeI	CATG	7 cut(s)	461, 606, 695, 871, 895, 954, 1026
FalI	AAGNNNNNCTT	8 cut(s)	180, 212, 499, 531, 764, 796, 822, 854
FatI	CATG	7 cut(s)	457, 602, 691, 867, 891, 950, 1022
FbaI	TGATCA	1 cut(s)	628
FblI	GTMKAC	1 cut(s)	86
Fnu4HI	GCNGC	5 cut(s)	226, 239, 429, 645, 741
FokI	GGATG	3 cut(s)	172, 533, 904
Fsp4HI	GCNGC	5 cut(s)	226, 239, 429, 645, 741
FspAI	RTGCGCAY	1 cut(s)	601
FspBI	CTAG	1 cut(s)	905
FspI	TGCGCA	1 cut(s)	601
GlaI	GCGC	2 cut(s)	75, 601
GluI	GCNGC	5 cut(s)	226, 239, 429, 645, 741
HaeIII	GGCC	2 cut(s)	135, 143
HapII	CCGG	2 cut(s)	242, 311
HhaI	GCGC	2 cut(s)	76, 602
Hin1II	CATG	7 cut(s)	461, 606, 695, 871, 895, 954, 1026
Hin6I	GCGC	2 cut(s)	74, 600
HinP1I	GCGC	2 cut(s)	74, 600
HincII	GTYRAC	1 cut(s)	753
HindII	GTYRAC	1 cut(s)	753
HinfI	GANTC	3 cut(s)	415, 676, 702
HpaI	GTTAAC	1 cut(s)	753
HpaII	CCGG	2 cut(s)	242, 311
Hpy166II	GTNNAC	3 cut(s)	31, 87, 753
Hpy188I	TCNGA	2 cut(s)	420, 625
Hpy188III	TCNNGA	3 cut(s)	220, 377, 574
Hpy8I	GTNNAC	3 cut(s)	31, 87, 753
Hpy99I	CGWCG	1 cut(s)	702
HpyAV	CCTTC	2 cut(s)	374, 815
HpyCH4III	ACNGT	1 cut(s)	453
HpyCH4IV	ACGT	2 cut(s)	89, 668
HpyCH4V	TGCA	7 cut(s)	179, 350, 408, 524, 647, 740, 1032
HpyF10VI	GCNNNNNNNGC	4 cut(s)	325, 347, 731, 740
HpyF3I	CTNAG	1 cut(s)	506
HpySE526I	ACGT	2 cut(s)	89, 668
Hsp92II	CATG	7 cut(s)	461, 606, 695, 871, 895, 954, 1026
HspAI	GCGC	2 cut(s)	74, 600
KpnI	GGTACC	1 cut(s)	961
Ksp22I	TGATCA	1 cut(s)	628
KspAI	GTTAAC	1 cut(s)	753
Kzo9I	GATC	5 cut(s)	172, 343, 628, 717, 799
LguI	GCTCTTC	1 cut(s)	828
LmnI	GCTCC	1 cut(s)	56
Lsp1109I	GCAGC	5 cut(s)	225, 237, 415, 631, 752
LweI	GCATC	3 cut(s)	511, 727, 984
MaeI	CTAG	1 cut(s)	905
MaeII	ACGT	2 cut(s)	89, 668
MaeIII	GTNAC	1 cut(s)	453
MalI	GATC	5 cut(s)	174, 345, 630, 719, 801
MboI	GATC	5 cut(s)	172, 343, 628, 717, 799
MboII	GAAGA	5 cut(s)	562, 599, 725, 842, 845
MflI	RGATCY	2 cut(s)	172, 717
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	9 cut(s)	565, 637, 680, 790, 862, 876, 982, 999, 1044
MlyI	GAGTC	1 cut(s)	424
MnlI	CCTC	5 cut(s)	119, 366, 391, 754, 818
MseI	TTAA	3 cut(s)	752, 930, 981
MslI	CAYNNNNRTG	2 cut(s)	690, 850
MspI	CCGG	2 cut(s)	242, 311
MwoI	GCNNNNNNNGC	4 cut(s)	325, 347, 731, 740
NdeII	GATC	5 cut(s)	172, 343, 628, 717, 799
NlaIII	CATG	7 cut(s)	461, 606, 695, 871, 895, 954, 1026
NlaIV	GGNNCC	1 cut(s)	959
NmuCI	GTSAC	1 cut(s)	453
NsbI	TGCGCA	1 cut(s)	601
NspI	RCATGY	4 cut(s)	461, 606, 695, 1026
PciI	ACATGT	3 cut(s)	457, 691, 1022
PciSI	GCTCTTC	1 cut(s)	828
PfeI	GAWTC	2 cut(s)	676, 702
PinAI	ACCGGT	1 cut(s)	310
PkrI	GCNGC	5 cut(s)	227, 240, 430, 646, 742
PleI	GAGTC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	423
Ppu21I	YACGTR	2 cut(s)	90, 669
PscI	ACATGT	3 cut(s)	457, 691, 1022
PsiI	TTATAA	1 cut(s)	393
PspN4I	GGNNCC	1 cut(s)	959
PstI	CTGCAG	2 cut(s)	352, 649
PsuI	RGATCY	2 cut(s)	172, 717
RsaI	GTAC	4 cut(s)	164, 450, 671, 959
RsaNI	GTAC	4 cut(s)	163, 449, 670, 958
RseI	CAYNNNNRTG	2 cut(s)	690, 850
SapI	GCTCTTC	1 cut(s)	828
SaqAI	TTAA	3 cut(s)	752, 930, 981
SatI	GCNGC	5 cut(s)	226, 239, 429, 645, 741
Sau3AI	GATC	5 cut(s)	172, 343, 628, 717, 799
SchI	GAGTC	1 cut(s)	424
SduI	GDGCHC	1 cut(s)	219
SfaNI	GCATC	3 cut(s)	511, 727, 984
SfcI	CTRYAG	2 cut(s)	348, 645
SmiMI	CAYNNNNRTG	2 cut(s)	690, 850
SmlI	CTYRAG	2 cut(s)	218, 770
SmoI	CTYRAG	2 cut(s)	218, 770
SnaBI	TACGTA	1 cut(s)	90
Sse9I	AATT	9 cut(s)	565, 637, 680, 790, 862, 876, 982, 999, 1044
SsiI	CCGC	1 cut(s)	319
SspMI	CTAG	1 cut(s)	905
TaaI	ACNGT	1 cut(s)	453
TaiI	ACGT	2 cut(s)	92, 671
TaqI	TCGA	1 cut(s)	700
TasI	AATT	9 cut(s)	565, 637, 680, 790, 862, 876, 982, 999, 1044
TatI	WGTACW	2 cut(s)	162, 448
TfiI	GAWTC	2 cut(s)	676, 702
Tru1I	TTAA	3 cut(s)	752, 930, 981
Tru9I	TTAA	3 cut(s)	752, 930, 981
TseFI	GTSAC	1 cut(s)	453
TseI	GCWGC	5 cut(s)	225, 238, 428, 644, 740
Tsp45I	GTSAC	1 cut(s)	453
TspDTI	ATGAA	6 cut(s)	248, 265, 321, 834, 856, 906
TspGWI	ACGGA	2 cut(s)	770, 910
XagI	CCTNNNNNAGG	2 cut(s)	770, 819
XapI	RAATTY	1 cut(s)	862
XceI	RCATGY	4 cut(s)	461, 606, 695, 1026
XmiI	GTMKAC	1 cut(s)	86
XspI	CTAG	1 cut(s)	905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.