FvH4_2g40370

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
28766295 .. 28767416
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g40370.t1

Sequence Viewer

Length: 1122 bp
ATGCCCACGCCTACTCCCAAGCTACCACTCTTCTTCATTCTCTCTCTTATTCTCTTCCCCATTCACTCTTTCTCTACTCCAACCAATATAAACACCAACACCACCGCCACCGCCGCTCAACATTTCCGAGAGGCTCCGCAGTTCTACAACTCCCCCGACTGCCCTTCCATCACCACCGTCCACGACGAAGACTTCGACCCCGATGAAGAAGACAACAACAACAACCACCACTTCATGATCTGTTCCCGCCAAGCCGTCCACGTGGCAATGACCCTAGACACCGCCTACATCCGCGGCTCCATGGCCGCCATACTTTCCGTCCTCCAACACTCCTCCTGCCCTCAAAACGTCGCCTTCCACTTCGTCACCTCCGCCGCCGCCAACGCGTCTCACCTACGCTCCACTATCGCTTCCTCCTTCCCTTACCTCACTTTCCAAATCTACCCCTTTGACGACTCCCACGTTACAGGACTCATCTCCACCTCCATCCGCTCCGCCTTGGACTGCCCTCTCAACTACGCCCGTAGCTACCTCGCCAACCTCCTCCCCCTCTGCGTACGACGCGTCGTTTACCTCGACTCCGATCTCATCCTAGTCGACGACATTGCCAAACTTGCCGACATTCCTCTCGGCAACGAAGACACTGTCCTGGCTGCGCCGGAGTACTGCAACGCAAACTTTACCTCATATTTTACTTCCGCATTCTGGTCCAACCCTTCTCTGTCTCTCACGTTCGCCGACCGGAAGGCGTGCTACTTCAACACAGGAGTGATGGTGATTGATCTGGACCGGTGGAGAGGCGGGGATTATACGGCGAAGATAGAAGAGTGGATGCAGCTGCAGAAGAGGATGAGAATCTACGAGCTCGGTTCTTTACCGCCGTTTCTTCTTGTTTTTGCTGGGAAGATAGCTCCAGTGGAGCACAGATGGAACCAACATGGGCTCGGCGGTGATAACTTCCGGGGGCTTTGCCGGAATTTGCATCCGGGTTCGGTGAGTCTGTTGCATTGGAGTGGGAAAGGGAAACCGTGGGCGAGATTGGAGGCCAACAGGCCATGCCCTTTGGACGCGCTCTGGGCACCTTATGATCTCCTGGAAACACCATTTGTTTTGGACTCTTGA

Protein Analysis

374

Amino Acids

41.78

Weight (kDa)

5.73

Isoelectric Point (pI)

42.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 87 - 346 2.9e-48 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013972)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19300
fragaria_vesca FvH4_2g40370
malus_domestica MD08G1036800.v1.1
prunus_persica Prupe.1G384100_v2.0.a1
pyrus_communis pycom08g02940 pycom15g02880
rosa_chinensis RchiOBHm_Chr6g0300381
rosa_laevigata RLG00000011343
rosa_multiflora Rmu_co8373719.1_g000001 Rmu_sc0001670.1_g000014
rosa_roxburghii Rroxscaffold_7G00167850
rosa_rugosa Rorug06G0295500
rosa_samantha Rh6AG408200 Rh6BG415500 Rh6CG422900 Rh6DG408500
rosa_wichuraiana Rw6G035700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1078
AccBSI CCGCTC 2 cut(s) 116, 492
AccI GTMKAC 1 cut(s) 597
AccII CGCG 4 cut(s) 294, 386, 564, 1070
AcoI YGGCCR 1 cut(s) 303
AcsI RAATTY 1 cut(s) 976
AcvI CACGTG 1 cut(s) 262
AfaI GTAC 2 cut(s) 558, 665
AfiI CCNNNNNNNGG 1 cut(s) 705
AflIII ACRYGT 2 cut(s) 384, 562
AgeI ACCGGT 1 cut(s) 789
AgsI TTSAA 1 cut(s) 760
AjnI CCWGG 2 cut(s) 648, 1092
AleI CACNNNNGTG 1 cut(s) 767
AluBI AGCT 5 cut(s) 22, 528, 838, 865, 911
AluI AGCT 5 cut(s) 22, 528, 838, 865, 911
Alw21I GWGCWC 2 cut(s) 867, 924
Alw26I GTCTC 2 cut(s) 393, 729
AoxI GGCC 3 cut(s) 303, 1044, 1052
ApeKI GCWGC 3 cut(s) 653, 835, 838
ApoI RAATTY 1 cut(s) 976
ArsI GACNNNNNNTTYG 4 cut(s) 176, 208, 630, 662
AsiGI ACCGGT 1 cut(s) 789
AspLEI GCGC 2 cut(s) 658, 1072
AspS9I GGNCC 2 cut(s) 708, 787
AsuC2I CCSGG 2 cut(s) 962, 987
AsuHPI GGTGA 6 cut(s) 163, 358, 383, 787, 962, 1006
AvaII GGWCC 2 cut(s) 708, 787
BaeGI GKGCMC 1 cut(s) 1081
BanI GGYRCC 1 cut(s) 1078
BanII GRGCYC 2 cut(s) 867, 945
BarI GAAGNNNNNNTAC 2 cut(s) 737, 769
BbrPI CACGTG 1 cut(s) 262
BbsI GAAGAC 3 cut(s) 195, 216, 645
Bbv12I GWGCWC 2 cut(s) 867, 924
BbvI GCAGC 3 cut(s) 640, 825, 847
BccI CCATC 4 cut(s) 176, 494, 766, 921
BceAI ACGGC 3 cut(s) 239, 828, 865
BcgI CGANNNNNNTGC 2 cut(s) 587, 621
BciT130I CCWGG 2 cut(s) 650, 1094
BcnI CCSGG 2 cut(s) 962, 987
BcoDI GTCTC 2 cut(s) 393, 729
BfaI CTAG 2 cut(s) 275, 593
BfmI CTRYAG 1 cut(s) 839
BisI GCNGC 8 cut(s) 114, 295, 306, 375, 378, 654, 836, 839
BlsI GCNGC 8 cut(s) 115, 296, 307, 376, 379, 655, 837, 840
BmcAI AGTACT 1 cut(s) 665
Bme1390I CCNGG 4 cut(s) 650, 962, 987, 1094
Bme18I GGWCC 2 cut(s) 708, 787
BmgT120I GGNCC 2 cut(s) 708, 787
BmiI GGNNCC 4 cut(s) 135, 298, 932, 1080
BmrFI CCNGG 4 cut(s) 650, 962, 987, 1094
BmsI GCATC 2 cut(s) 822, 991
BpiI GAAGAC 3 cut(s) 195, 216, 645
BpmI CTGGAG 1 cut(s) 897
BpuMI CCSGG 2 cut(s) 962, 987
BsaAI YACGTR 1 cut(s) 262
BsaBI GATNNNNATC 1 cut(s) 854
BsaJI CCNNGG 5 cut(s) 292, 300, 498, 961, 1028
BsaWI WCCGGW 2 cut(s) 741, 789
BsaXI ACNNNNNCTCC 7 cut(s) 28, 383, 413, 563, 593, 759, 789
Bsc4I CCNNNNNNNGG 1 cut(s) 705
Bse118I RCCGGY 1 cut(s) 789
Bse1I ACTGG 1 cut(s) 914
Bse3DI GCAATG 2 cut(s) 273, 603
Bse8I GATNNNNATC 1 cut(s) 854
BseBI CCWGG 2 cut(s) 650, 1094
BseDI CCNNGG 5 cut(s) 292, 300, 498, 961, 1028
BseGI GGATG 6 cut(s) 288, 486, 588, 837, 855, 982
BseJI GATNNNNATC 1 cut(s) 854
BseLI CCNNNNNNNGG 1 cut(s) 705
BseMI GCAATG 2 cut(s) 273, 603
BseNI ACTGG 1 cut(s) 914
BseRI GAGGAG 2 cut(s) 322, 533
BseSI GKGCMC 1 cut(s) 1081
BseXI GCAGC 3 cut(s) 640, 825, 847
BseYI CCCAGC 1 cut(s) 899
Bsh1236I CGCG 4 cut(s) 294, 386, 564, 1070
Bsh1285I CGRYCG 1 cut(s) 742
BshFI GGCC 3 cut(s) 305, 1046, 1054
BshNI GGYRCC 1 cut(s) 1078
BshTI ACCGGT 1 cut(s) 789
BsiEI CGRYCG 1 cut(s) 742
BsiHKAI GWGCWC 2 cut(s) 867, 924
BsiSI CCGG 6 cut(s) 659, 742, 790, 961, 973, 986
BsiWI CGTACG 1 cut(s) 556
BslI CCNNNNNNNGG 1 cut(s) 705
BsmAI GTCTC 2 cut(s) 393, 729
BsmBI CGTCTC 1 cut(s) 393
BsmI GAATGC 1 cut(s) 701
BsnI GGCC 3 cut(s) 305, 1046, 1054
Bsp1286I GDGCHC 4 cut(s) 867, 924, 945, 1081
Bsp143I GATC 4 cut(s) 237, 583, 781, 1087
Bsp19I CCATGG 1 cut(s) 300
BspANI GGCC 3 cut(s) 305, 1046, 1054
BspFNI CGCG 4 cut(s) 294, 386, 564, 1070
BspHI TCATGA 1 cut(s) 234
BspLI GGNNCC 4 cut(s) 135, 298, 932, 1080
BspMAI CTGCAG 1 cut(s) 843
BspT107I GGYRCC 1 cut(s) 1078
BsrBI CCGCTC 2 cut(s) 116, 492
BsrDI GCAATG 2 cut(s) 273, 603
BsrFI RCCGGY 1 cut(s) 789
BsrI ACTGG 1 cut(s) 914
BssAI RCCGGY 1 cut(s) 789
BssECI CCNNGG 5 cut(s) 292, 300, 498, 961, 1028
BssMI GATC 4 cut(s) 237, 583, 781, 1087
BssT1I CCWWGG 2 cut(s) 300, 498
Bst2UI CCWGG 2 cut(s) 650, 1094
Bst4CI ACNGT 3 cut(s) 178, 646, 1029
Bst6I CTCTTC 4 cut(s) 35, 59, 819, 839
BstBAI YACGTR 1 cut(s) 262
BstC8I GCNNGC 1 cut(s) 751
BstDSI CCRYGG 3 cut(s) 292, 300, 1028
BstF5I GGATG 6 cut(s) 288, 486, 588, 837, 855, 982
BstFNI CGCG 4 cut(s) 294, 386, 564, 1070
BstHHI GCGC 2 cut(s) 658, 1072
BstKTI GATC 4 cut(s) 240, 586, 784, 1090
BstMAI GTCTC 2 cut(s) 393, 729
BstMBI GATC 4 cut(s) 237, 583, 781, 1087
BstMCI CGRYCG 1 cut(s) 742
BstMWI GCNNNNNNNGC 5 cut(s) 113, 383, 561, 614, 1076
BstNI CCWGG 2 cut(s) 650, 1094
BstSCI CCNGG 4 cut(s) 648, 960, 985, 1092
BstSFI CTRYAG 1 cut(s) 839
BstSLI GKGCMC 1 cut(s) 1081
BstUI CGCG 4 cut(s) 294, 386, 564, 1070
BstV1I GCAGC 3 cut(s) 640, 825, 847
BstV2I GAAGAC 3 cut(s) 195, 216, 645
BsuRI GGCC 3 cut(s) 305, 1046, 1054
BtgI CCRYGG 3 cut(s) 292, 300, 1028
BtsCI GGATG 6 cut(s) 288, 486, 588, 837, 855, 982
BtsIMutI CAGTG 2 cut(s) 642, 921
Cac8I GCNNGC 1 cut(s) 751
CciI TCATGA 1 cut(s) 234
CfoI GCGC 2 cut(s) 658, 1072
Cfr10I RCCGGY 1 cut(s) 789
Cfr13I GGNCC 2 cut(s) 708, 787
Cfr42I CCGCGG 1 cut(s) 295
CseI GACGC 4 cut(s) 375, 553, 570, 1076
Csp6I GTAC 2 cut(s) 557, 664
CspAI ACCGGT 1 cut(s) 789
CviAII CATG 4 cut(s) 235, 301, 938, 1056
CviQI GTAC 2 cut(s) 557, 664
DpnI GATC 4 cut(s) 239, 585, 783, 1089
DpnII GATC 4 cut(s) 237, 583, 781, 1087
EaeI YGGCCR 1 cut(s) 303
Eam1104I CTCTTC 4 cut(s) 35, 59, 819, 839
EarI CTCTTC 4 cut(s) 35, 59, 819, 839
EciI GGCGGA 2 cut(s) 361, 484
Ecl136II GAGCTC 1 cut(s) 865
Eco130I CCWWGG 2 cut(s) 300, 498
Eco24I GRGCYC 2 cut(s) 867, 945
Eco47I GGWCC 2 cut(s) 708, 787
Eco53kI GAGCTC 1 cut(s) 865
Eco72I CACGTG 1 cut(s) 262
EcoICRI GAGCTC 1 cut(s) 865
EcoRII CCWGG 2 cut(s) 648, 1092
EcoT14I CCWWGG 2 cut(s) 300, 498
EcoT38I GRGCYC 2 cut(s) 867, 945
ErhI CCWWGG 2 cut(s) 300, 498
Esp3I CGTCTC 1 cut(s) 393
FaeI CATG 4 cut(s) 238, 304, 941, 1059
FaiI YATR 9 cut(s) 89, 236, 302, 311, 688, 810, 939, 1057, 1086
FatI CATG 4 cut(s) 234, 300, 937, 1055
FauI CCCGC 2 cut(s) 254, 794
FblI GTMKAC 1 cut(s) 597
Fnu4HI GCNGC 8 cut(s) 114, 295, 306, 375, 378, 654, 836, 839
FokI GGATG 6 cut(s) 275, 473, 575, 844, 862, 969
FriOI GRGCYC 2 cut(s) 867, 945
Fsp4HI GCNGC 8 cut(s) 114, 295, 306, 375, 378, 654, 836, 839
FspBI CTAG 2 cut(s) 275, 593
GlaI GCGC 2 cut(s) 657, 1071
GluI GCNGC 8 cut(s) 114, 295, 306, 375, 378, 654, 836, 839
GsaI CCCAGC 1 cut(s) 903
GsuI CTGGAG 1 cut(s) 897
HaeIII GGCC 3 cut(s) 305, 1046, 1054
HapII CCGG 6 cut(s) 659, 742, 790, 961, 973, 986
HgaI GACGC 4 cut(s) 375, 553, 570, 1076
HhaI GCGC 2 cut(s) 658, 1072
Hin1II CATG 4 cut(s) 238, 304, 941, 1059
Hin6I GCGC 2 cut(s) 656, 1070
HinP1I GCGC 2 cut(s) 656, 1070
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HinfI GANTC 6 cut(s) 455, 471, 578, 855, 997, 1115
HpaII CCGG 6 cut(s) 659, 742, 790, 961, 973, 986
HphI GGTGA 6 cut(s) 163, 358, 383, 787, 962, 1006
Hpy166II GTNNAC 4 cut(s) 181, 259, 571, 598
Hpy188I TCNGA 2 cut(s) 128, 583
Hpy188III TCNNGA 3 cut(s) 235, 785, 1119
Hpy8I GTNNAC 4 cut(s) 181, 259, 571, 598
Hpy99I CGWCG 5 cut(s) 188, 353, 564, 569, 602
HpyAV CCTTC 5 cut(s) 174, 364, 427, 726, 739
HpyCH4III ACNGT 3 cut(s) 178, 646, 1029
HpyCH4IV ACGT 4 cut(s) 261, 348, 462, 731
HpyCH4V TGCA 5 cut(s) 669, 835, 841, 982, 1006
HpyF10VI GCNNNNNNNGC 5 cut(s) 113, 383, 561, 614, 1076
HpySE526I ACGT 4 cut(s) 261, 348, 462, 731
Hsp92II CATG 4 cut(s) 238, 304, 941, 1059
HspAI GCGC 2 cut(s) 656, 1070
KspI CCGCGG 1 cut(s) 295
Kzo9I GATC 4 cut(s) 237, 583, 781, 1087
LmnI GCTCC 6 cut(s) 139, 302, 404, 497, 916, 919
Lsp1109I GCAGC 3 cut(s) 640, 825, 847
LweI GCATC 2 cut(s) 822, 991
MaeI CTAG 2 cut(s) 275, 593
MaeII ACGT 4 cut(s) 261, 348, 462, 731
MaeIII GTNAC 2 cut(s) 364, 463
MalI GATC 4 cut(s) 239, 585, 783, 1089
MbiI CCGCTC 2 cut(s) 116, 492
MboI GATC 4 cut(s) 237, 583, 781, 1087
MhlI GDGCHC 4 cut(s) 867, 924, 945, 1081
MluCI AATT 1 cut(s) 976
MluI ACGCGT 2 cut(s) 384, 562
MlyI GAGTC 5 cut(s) 449, 465, 572, 1006, 1109
MmeI TCCRAC 3 cut(s) 104, 349, 735
MslI CAYNNNNRTG 2 cut(s) 767, 1011
MspA1I CMGCKG 2 cut(s) 294, 838
MspI CCGG 6 cut(s) 659, 742, 790, 961, 973, 986
MspR9I CCNGG 4 cut(s) 650, 962, 987, 1094
Mva1269I GAATGC 1 cut(s) 701
MvaI CCWGG 2 cut(s) 650, 1094
MvnI CGCG 4 cut(s) 294, 386, 564, 1070
MwoI GCNNNNNNNGC 5 cut(s) 113, 383, 561, 614, 1076
NciI CCSGG 2 cut(s) 962, 987
NcoI CCATGG 1 cut(s) 300
NdeII GATC 4 cut(s) 237, 583, 781, 1087
NlaIII CATG 4 cut(s) 238, 304, 941, 1059
NlaIV GGNNCC 4 cut(s) 135, 298, 932, 1080
NmeAIII GCCGAG 2 cut(s) 609, 924
NmuCI GTSAC 1 cut(s) 364
OliI CACNNNNGTG 1 cut(s) 767
PagI TCATGA 1 cut(s) 234
PcsI WCGNNNNNNNCGW 3 cut(s) 192, 459, 573
PctI GAATGC 1 cut(s) 701
PfeI GAWTC 1 cut(s) 855
Pfl23II CGTACG 1 cut(s) 556
PflFI GACNNNGTC 1 cut(s) 644
PfoI TCCNGGA 1 cut(s) 1092
PinAI ACCGGT 1 cut(s) 789
PkrI GCNGC 8 cut(s) 115, 296, 307, 376, 379, 655, 837, 840
PleI GAGTC 5 cut(s) 449, 465, 572, 1005, 1109
PmaCI CACGTG 1 cut(s) 262
PmlI CACGTG 1 cut(s) 262
PpsI GAGTC 5 cut(s) 449, 465, 572, 1005, 1109
Ppu21I YACGTR 1 cut(s) 262
Psp124BI GAGCTC 1 cut(s) 867
Psp6I CCWGG 2 cut(s) 648, 1092
PspCI CACGTG 1 cut(s) 262
PspFI CCCAGC 1 cut(s) 899
PspGI CCWGG 2 cut(s) 648, 1092
PspLI CGTACG 1 cut(s) 556
PspN4I GGNNCC 4 cut(s) 135, 298, 932, 1080
PspPI GGNCC 2 cut(s) 708, 787
PstI CTGCAG 1 cut(s) 843
PsyI GACNNNGTC 1 cut(s) 644
PvuII CAGCTG 1 cut(s) 838
RsaI GTAC 2 cut(s) 558, 665
RsaNI GTAC 2 cut(s) 557, 664
RseI CAYNNNNRTG 2 cut(s) 767, 1011
SacI GAGCTC 1 cut(s) 867
SacII CCGCGG 1 cut(s) 295
SalI GTCGAC 1 cut(s) 596
SatI GCNGC 8 cut(s) 114, 295, 306, 375, 378, 654, 836, 839
Sau3AI GATC 4 cut(s) 237, 583, 781, 1087
Sau96I GGNCC 2 cut(s) 708, 787
ScaI AGTACT 1 cut(s) 665
SchI GAGTC 5 cut(s) 449, 465, 572, 1006, 1109
ScrFI CCNGG 4 cut(s) 650, 962, 987, 1094
SduI GDGCHC 4 cut(s) 867, 924, 945, 1081
SfaNI GCATC 2 cut(s) 822, 991
SfcI CTRYAG 1 cut(s) 839
Sfr303I CCGCGG 1 cut(s) 295
SgrBI CCGCGG 1 cut(s) 295
SinI GGWCC 2 cut(s) 708, 787
SmiMI CAYNNNNRTG 2 cut(s) 767, 1011
Sse9I AATT 1 cut(s) 976
SspMI CTAG 2 cut(s) 275, 593
SstI GAGCTC 1 cut(s) 867
StyD4I CCNGG 4 cut(s) 648, 960, 985, 1092
StyI CCWWGG 2 cut(s) 300, 498
TaaI ACNGT 3 cut(s) 178, 646, 1029
TaiI ACGT 4 cut(s) 264, 351, 465, 734
TaqI TCGA 3 cut(s) 195, 576, 597
TasI AATT 1 cut(s) 976
TatI WGTACW 1 cut(s) 663
TauI GCSGC 5 cut(s) 116, 297, 308, 377, 380
TfiI GAWTC 1 cut(s) 855
TscAI CASTG 2 cut(s) 649, 921
TseFI GTSAC 1 cut(s) 364
TseI GCWGC 3 cut(s) 653, 835, 838
Tsp45I GTSAC 1 cut(s) 364
TspDTI ATGAA 3 cut(s) 25, 219, 223
TspGWI ACGGA 1 cut(s) 307
TspRI CASTG 2 cut(s) 649, 921
Tth111I GACNNNGTC 1 cut(s) 644
VpaK11BI GGWCC 2 cut(s) 708, 787
XapI RAATTY 1 cut(s) 976
XmiI GTMKAC 1 cut(s) 597
XspI CTAG 2 cut(s) 275, 593
ZrmI AGTACT 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.