Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001670.1

Orthogroup ID

OG0013972

Physical Location & Seq

Genomic Coordinates Forward (+)

65791 .. 66927

Gene Structure 1137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001670.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

atgcccacgcctaatcccaagctacctctccttttcattctctctctcattctctttcccattcactcttgctctactccaaccaatgtaaataccaacaccaccgctgccgccgccgccgcgcatcattttagagaagctccgcagttctacaactcccccgactgcccttccatcaccaccgtccacgacgacgacttcgaccccgatgaagaagacgacaacaacaataacaaccaccaccacttcatgatctgttcccgccaagccgtccacgtggcaatgactttggacaccgcctacatccgcggctccatggctgccatcctctccgtcctccaacactcctcctgtccccaaaacgtcgccttccacttcgtcgcctctgccgcagccaacgcgtcccacctacgctccaccattgcttcctccttcccttacctcaccttccaaatctaccccttcgacgactcccacgtctcgggactcatctccacctccatccgctccgccttggactgccctctcaactacgcccgtagctaccttgccaacctcctccccctctgcgtacgacgagtcgtctacctcgactccgatctcattctggtcgacgacattgccaagctcgcggacattcccctcggcgacgacagcaccgttctcgccgccccggagtactgcaacgcaaacttcacttcgtatttcaccactacattctggtccaatccttctctctcgctcacgttcgctgaccggaaggcctgttacttcaacaccggcgtgatggtgatcgatctggaccgctggagagggggtgactacaccgcgaaaatagaagagtggatgcagctgcagaagagaataagaatctacgagctcggttcgttgccgccatttcttctagtttttgcggggaaaatagcgcctgtggagcacagatggaaccaacatggtctcggtggtgataacttccgggggctttgccggaatttgcatcctggttcggtgagtcttttgcattggagtggaaaagggaagccgtgggcgagattggaagctaacaggccatgccctttggacgcgctctgggctccttatgatctcttggaaactccatttgttttggactcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003002 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005975 GO:0005976 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009987 GO:0010051 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0032501 GO:0032502 GO:0032504 GO:0033692 GO:0034637 GO:0034645 GO:0042545 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045491 GO:0045492 GO:0047262 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0052386 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

378

Amino Acids

42.12

Weight (kDa)

5.75

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19300
fragaria_vesca	FvH4_2g40370
malus_domestica	MD08G1036800.v1.1
prunus_persica	Prupe.1G384100_v2.0.a1
pyrus_communis	pycom08g02940 pycom15g02880
rosa_chinensis	RchiOBHm_Chr6g0300381
rosa_laevigata	RLG00000011343
rosa_multiflora	Rmu_co8373719.1_g000001 Rmu_sc0001670.1_g000014
rosa_roxburghii	Rroxscaffold_7G00167850
rosa_rugosa	Rorug06G0295500
rosa_samantha	Rh6AG408200 Rh6BG415500 Rh6CG422900 Rh6DG408500
rosa_wichuraiana	Rw6G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	476
AccBSI	CCGCTC	1 cut(s)	507
AccI	GTMKAC	2 cut(s)	585, 612
AccII	CGCG	6 cut(s)	122, 309, 401, 632, 830, 1085
AcsI	RAATTY	1 cut(s)	991
AcvI	CACGTG	1 cut(s)	277
AfaI	GTAC	2 cut(s)	573, 680
AfiI	CCNNNNNNNGG	1 cut(s)	481
AflIII	ACRYGT	1 cut(s)	399
AgsI	TTSAA	1 cut(s)	775
AhdI	GACNNNNNGTC	1 cut(s)	581
AjiI	CACGTC	1 cut(s)	478
AjnI	CCWGG	1 cut(s)	1000
AleI	CACNNNNGTG	1 cut(s)	782
AluBI	AGCT	7 cut(s)	22, 140, 543, 628, 853, 880, 1061
AluI	AGCT	7 cut(s)	22, 140, 543, 628, 853, 880, 1061
Alw21I	GWGCWC	2 cut(s)	882, 939
Alw26I	GTCTC	2 cut(s)	484, 962
Ama87I	CYCGRG	1 cut(s)	481
AoxI	GGCC	2 cut(s)	762, 1067
ApeKI	GCWGC	5 cut(s)	107, 320, 392, 850, 853
ApoI	RAATTY	1 cut(s)	991
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
AspLEI	GCGC	3 cut(s)	124, 928, 1087
AspS9I	GGNCC	2 cut(s)	723, 802
AsuC2I	CCSGG	2 cut(s)	674, 977
AsuHPI	GGTGA	7 cut(s)	169, 436, 700, 802, 830, 977, 1021
AvaI	CYCGRG	1 cut(s)	481
AvaII	GGWCC	2 cut(s)	723, 802
BanII	GRGCYC	2 cut(s)	882, 1096
BarI	GAAGNNNNNNTAC	2 cut(s)	752, 784
BbrPI	CACGTG	1 cut(s)	277
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	2 cut(s)	882, 939
BbvI	GCAGC	5 cut(s)	94, 307, 404, 840, 862
BccI	CCATC	5 cut(s)	182, 332, 509, 781, 936
BceAI	ACGGC	2 cut(s)	254, 1027
BcgI	CGANNNNNNTGC	4 cut(s)	602, 636, 646, 680
BciT130I	CCWGG	1 cut(s)	1002
BcnI	CCSGG	2 cut(s)	674, 977
BcoDI	GTCTC	2 cut(s)	484, 962
BfaI	CTAG	1 cut(s)	905
BfmI	CTRYAG	1 cut(s)	854
BfoI	RGCGCY	1 cut(s)	929
BmcAI	AGTACT	1 cut(s)	680
Bme1390I	CCNGG	3 cut(s)	674, 977, 1002
Bme18I	GGWCC	2 cut(s)	723, 802
BmeRI	GACNNNNNGTC	1 cut(s)	581
BmeT110I	CYCGRG	1 cut(s)	481
BmgBI	CACGTC	1 cut(s)	478
BmgT120I	GGNCC	2 cut(s)	723, 802
BmiI	GGNNCC	3 cut(s)	313, 947, 1095
BmrFI	CCNGG	3 cut(s)	674, 977, 1002
BmsI	GCATC	3 cut(s)	133, 837, 1006
BpiI	GAAGAC	1 cut(s)	222
BpmI	CTGGAG	1 cut(s)	829
BpuMI	CCSGG	2 cut(s)	674, 977
Bsa29I	ATCGAT	1 cut(s)	795
BsaAI	YACGTR	1 cut(s)	277
BsaBI	GATNNNNATC	1 cut(s)	791
BsaI	GGTCTC	1 cut(s)	962
BsaJI	CCNNGG	7 cut(s)	307, 315, 513, 643, 672, 976, 1043
BsaWI	WCCGGW	1 cut(s)	756
BsaXI	ACNNNNNCTCC	6 cut(s)	398, 428, 578, 608, 802, 832
Bsc4I	CCNNNNNNNGG	1 cut(s)	481
Bse118I	RCCGGY	1 cut(s)	779
Bse3DI	GCAATG	3 cut(s)	288, 420, 618
Bse8I	GATNNNNATC	1 cut(s)	791
BseBI	CCWGG	1 cut(s)	1002
BseCI	ATCGAT	1 cut(s)	795
BseDI	CCNNGG	7 cut(s)	307, 315, 513, 643, 672, 976, 1043
BseGI	GGATG	5 cut(s)	303, 324, 501, 852, 997
BseJI	GATNNNNATC	1 cut(s)	791
BseLI	CCNNNNNNNGG	1 cut(s)	481
BseMI	GCAATG	3 cut(s)	288, 420, 618
BseRI	GAGGAG	2 cut(s)	337, 548
BseXI	GCAGC	5 cut(s)	94, 307, 404, 840, 862
Bsh1236I	CGCG	6 cut(s)	122, 309, 401, 632, 830, 1085
BshFI	GGCC	2 cut(s)	764, 1069
BshVI	ATCGAT	1 cut(s)	795
BsiHKAI	GWGCWC	2 cut(s)	882, 939
BsiHKCI	CYCGRG	1 cut(s)	481
BsiSI	CCGG	5 cut(s)	674, 757, 780, 976, 988
BsiWI	CGTACG	1 cut(s)	571
BslFI	GGGAC	3 cut(s)	339, 388, 498
BslI	CCNNNNNNNGG	1 cut(s)	481
BsmAI	GTCTC	2 cut(s)	484, 962
BsmBI	CGTCTC	1 cut(s)	484
BsmFI	GGGAC	3 cut(s)	339, 388, 498
BsnI	GGCC	2 cut(s)	764, 1069
Bso31I	GGTCTC	1 cut(s)	962
BsoBI	CYCGRG	1 cut(s)	481
Bsp1286I	GDGCHC	3 cut(s)	882, 939, 1096
Bsp143I	GATC	5 cut(s)	252, 598, 792, 796, 1102
Bsp19I	CCATGG	1 cut(s)	315
BspANI	GGCC	2 cut(s)	764, 1069
BspDI	ATCGAT	1 cut(s)	795
BspFNI	CGCG	6 cut(s)	122, 309, 401, 632, 830, 1085
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	3 cut(s)	313, 947, 1095
BspMAI	CTGCAG	1 cut(s)	858
BspTNI	GGTCTC	1 cut(s)	962
BsrBI	CCGCTC	1 cut(s)	507
BsrDI	GCAATG	3 cut(s)	288, 420, 618
BsrFI	RCCGGY	1 cut(s)	779
BssAI	RCCGGY	1 cut(s)	779
BssECI	CCNNGG	7 cut(s)	307, 315, 513, 643, 672, 976, 1043
BssMI	GATC	5 cut(s)	252, 598, 792, 796, 1102
BssT1I	CCWWGG	2 cut(s)	315, 513
Bst2UI	CCWGG	1 cut(s)	1002
Bst4CI	ACNGT	2 cut(s)	184, 661
Bst6I	CTCTTC	2 cut(s)	834, 854
BstBAI	YACGTR	1 cut(s)	277
BstC8I	GCNNGC	1 cut(s)	630
BstDSI	CCRYGG	3 cut(s)	307, 315, 1043
BstF5I	GGATG	5 cut(s)	303, 324, 501, 852, 997
BstFNI	CGCG	6 cut(s)	122, 309, 401, 632, 830, 1085
BstH2I	RGCGCY	1 cut(s)	929
BstHHI	GCGC	3 cut(s)	124, 928, 1087
BstKTI	GATC	5 cut(s)	255, 601, 795, 799, 1105
BstMAI	GTCTC	2 cut(s)	484, 962
BstMBI	GATC	5 cut(s)	252, 598, 792, 796, 1102
BstMWI	GCNNNNNNNGC	9 cut(s)	113, 116, 119, 389, 398, 629, 654, 934, 1091
BstNI	CCWGG	1 cut(s)	1002
BstSCI	CCNGG	3 cut(s)	672, 975, 1000
BstSFI	CTRYAG	1 cut(s)	854
BstUI	CGCG	6 cut(s)	122, 309, 401, 632, 830, 1085
BstV1I	GCAGC	5 cut(s)	94, 307, 404, 840, 862
BstV2I	GAAGAC	1 cut(s)	222
Bsu15I	ATCGAT	1 cut(s)	795
BsuRI	GGCC	2 cut(s)	764, 1069
BsuTUI	ATCGAT	1 cut(s)	795
BtgI	CCRYGG	3 cut(s)	307, 315, 1043
BtrI	CACGTC	1 cut(s)	478
BtsCI	GGATG	5 cut(s)	303, 324, 501, 852, 997
Cac8I	GCNNGC	1 cut(s)	630
CciI	TCATGA	1 cut(s)	249
CfoI	GCGC	3 cut(s)	124, 928, 1087
Cfr10I	RCCGGY	1 cut(s)	779
Cfr13I	GGNCC	2 cut(s)	723, 802
Cfr42I	CCGCGG	1 cut(s)	310
ClaI	ATCGAT	1 cut(s)	795
CseI	GACGC	2 cut(s)	390, 1091
Csp6I	GTAC	2 cut(s)	572, 679
CviAII	CATG	4 cut(s)	250, 316, 953, 1071
CviQI	GTAC	2 cut(s)	572, 679
DpnI	GATC	5 cut(s)	254, 600, 794, 798, 1104
DpnII	GATC	5 cut(s)	252, 598, 792, 796, 1102
DrdI	GACNNNNNNGTC	1 cut(s)	476
DriI	GACNNNNNGTC	1 cut(s)	581
DseDI	GACNNNNNNGTC	1 cut(s)	476
Eam1104I	CTCTTC	2 cut(s)	834, 854
Eam1105I	GACNNNNNGTC	1 cut(s)	581
EarI	CTCTTC	2 cut(s)	834, 854
EciI	GGCGGA	1 cut(s)	499
Ecl136II	GAGCTC	1 cut(s)	880
Eco130I	CCWWGG	2 cut(s)	315, 513
Eco147I	AGGCCT	1 cut(s)	764
Eco24I	GRGCYC	2 cut(s)	882, 1096
Eco31I	GGTCTC	1 cut(s)	962
Eco47I	GGWCC	2 cut(s)	723, 802
Eco53kI	GAGCTC	1 cut(s)	880
Eco72I	CACGTG	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	481
EcoICRI	GAGCTC	1 cut(s)	880
EcoRII	CCWGG	1 cut(s)	1000
EcoT14I	CCWWGG	2 cut(s)	315, 513
EcoT38I	GRGCYC	2 cut(s)	882, 1096
ErhI	CCWWGG	2 cut(s)	315, 513
Esp3I	CGTCTC	1 cut(s)	484
FaeI	CATG	4 cut(s)	253, 319, 956, 1074
FaiI	YATR	5 cut(s)	251, 317, 954, 1072, 1101
FaqI	GGGAC	3 cut(s)	339, 388, 498
FatI	CATG	4 cut(s)	249, 315, 952, 1070
FauI	CCCGC	2 cut(s)	269, 907
FblI	GTMKAC	2 cut(s)	585, 612
FokI	GGATG	5 cut(s)	290, 311, 488, 859, 984
FriOI	GRGCYC	2 cut(s)	882, 1096
FspBI	CTAG	1 cut(s)	905
GlaI	GCGC	3 cut(s)	123, 927, 1086
GsuI	CTGGAG	1 cut(s)	829
HaeII	RGCGCY	1 cut(s)	929
HaeIII	GGCC	2 cut(s)	764, 1069
HapII	CCGG	5 cut(s)	674, 757, 780, 976, 988
HgaI	GACGC	2 cut(s)	390, 1091
HhaI	GCGC	3 cut(s)	124, 928, 1087
Hin1II	CATG	4 cut(s)	253, 319, 956, 1074
Hin6I	GCGC	3 cut(s)	122, 926, 1085
HinP1I	GCGC	3 cut(s)	122, 926, 1085
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HinfI	GANTC	7 cut(s)	470, 486, 579, 593, 870, 1012, 1130
HpaII	CCGG	5 cut(s)	674, 757, 780, 976, 988
HphI	GGTGA	7 cut(s)	169, 436, 700, 802, 830, 977, 1021
Hpy166II	GTNNAC	4 cut(s)	187, 274, 586, 613
Hpy188I	TCNGA	1 cut(s)	598
Hpy188III	TCNNGA	4 cut(s)	250, 483, 800, 1134
Hpy8I	GTNNAC	4 cut(s)	187, 274, 586, 613
Hpy99I	CGWCG	8 cut(s)	194, 197, 368, 383, 470, 579, 617, 653
HpyAV	CCTTC	7 cut(s)	180, 379, 442, 457, 472, 741, 754
HpyCH4III	ACNGT	2 cut(s)	184, 661
HpyCH4IV	ACGT	4 cut(s)	276, 363, 477, 746
HpyCH4V	TGCA	5 cut(s)	684, 850, 856, 997, 1021
HpyF10VI	GCNNNNNNNGC	9 cut(s)	113, 116, 119, 389, 398, 629, 654, 934, 1091
HpySE526I	ACGT	4 cut(s)	276, 363, 477, 746
Hsp92II	CATG	4 cut(s)	253, 319, 956, 1074
HspAI	GCGC	3 cut(s)	122, 926, 1085
KspI	CCGCGG	1 cut(s)	310
Kzo9I	GATC	5 cut(s)	252, 598, 792, 796, 1102
LmnI	GCTCC	6 cut(s)	145, 317, 419, 512, 934, 1099
Lsp1109I	GCAGC	5 cut(s)	94, 307, 404, 840, 862
LweI	GCATC	3 cut(s)	133, 837, 1006
MaeI	CTAG	1 cut(s)	905
MaeII	ACGT	4 cut(s)	276, 363, 477, 746
MaeIII	GTNAC	2 cut(s)	767, 818
MalI	GATC	5 cut(s)	254, 600, 794, 798, 1104
MbiI	CCGCTC	1 cut(s)	507
MboI	GATC	5 cut(s)	252, 598, 792, 796, 1102
MboII	GAAGA	5 cut(s)	224, 227, 851, 871, 893
MhlI	GDGCHC	3 cut(s)	882, 939, 1096
MluCI	AATT	1 cut(s)	991
MluI	ACGCGT	1 cut(s)	399
MlyI	GAGTC	6 cut(s)	464, 480, 587, 588, 1021, 1124
MmeI	TCCRAC	2 cut(s)	104, 364
MslI	CAYNNNNRTG	2 cut(s)	782, 1026
MspA1I	CMGCKG	4 cut(s)	107, 309, 807, 853
MspI	CCGG	5 cut(s)	674, 757, 780, 976, 988
MspR9I	CCNGG	3 cut(s)	674, 977, 1002
MvaI	CCWGG	1 cut(s)	1002
MvnI	CGCG	6 cut(s)	122, 309, 401, 632, 830, 1085
MwoI	GCNNNNNNNGC	9 cut(s)	113, 116, 119, 389, 398, 629, 654, 934, 1091
NciI	CCSGG	2 cut(s)	674, 977
NcoI	CCATGG	1 cut(s)	315
NdeII	GATC	5 cut(s)	252, 598, 792, 796, 1102
NlaIII	CATG	4 cut(s)	253, 319, 956, 1074
NlaIV	GGNNCC	3 cut(s)	313, 947, 1095
NmeAIII	GCCGAG	1 cut(s)	624
NmuCI	GTSAC	1 cut(s)	818
OliI	CACNNNNGTG	1 cut(s)	782
PagI	TCATGA	1 cut(s)	249
PceI	AGGCCT	1 cut(s)	764
PcsI	WCGNNNNNNNCGW	4 cut(s)	198, 474, 588, 657
PfeI	GAWTC	1 cut(s)	870
Pfl23II	CGTACG	1 cut(s)	571
PleI	GAGTC	6 cut(s)	464, 480, 587, 587, 1020, 1124
PmaCI	CACGTG	1 cut(s)	277
PmlI	CACGTG	1 cut(s)	277
PpsI	GAGTC	6 cut(s)	464, 480, 587, 587, 1020, 1124
Ppu21I	YACGTR	1 cut(s)	277
Psp124BI	GAGCTC	1 cut(s)	882
Psp6I	CCWGG	1 cut(s)	1000
PspCI	CACGTG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	1000
PspLI	CGTACG	1 cut(s)	571
PspN4I	GGNNCC	3 cut(s)	313, 947, 1095
PspPI	GGNCC	2 cut(s)	723, 802
PstI	CTGCAG	1 cut(s)	858
PvuII	CAGCTG	1 cut(s)	853
RsaI	GTAC	2 cut(s)	573, 680
RsaNI	GTAC	2 cut(s)	572, 679
RseI	CAYNNNNRTG	2 cut(s)	782, 1026
SacI	GAGCTC	1 cut(s)	882
SacII	CCGCGG	1 cut(s)	310
SalI	GTCGAC	1 cut(s)	611
Sau3AI	GATC	5 cut(s)	252, 598, 792, 796, 1102
Sau96I	GGNCC	2 cut(s)	723, 802
ScaI	AGTACT	1 cut(s)	680
SchI	GAGTC	6 cut(s)	464, 480, 587, 588, 1021, 1124
ScrFI	CCNGG	3 cut(s)	674, 977, 1002
SduI	GDGCHC	3 cut(s)	882, 939, 1096
SfaNI	GCATC	3 cut(s)	133, 837, 1006
SfcI	CTRYAG	1 cut(s)	854
Sfr303I	CCGCGG	1 cut(s)	310
SgrAI	CRCCGGYG	1 cut(s)	779
SgrBI	CCGCGG	1 cut(s)	310
SinI	GGWCC	2 cut(s)	723, 802
SmiMI	CAYNNNNRTG	2 cut(s)	782, 1026
Sse9I	AATT	1 cut(s)	991
SseBI	AGGCCT	1 cut(s)	764
SspMI	CTAG	1 cut(s)	905
SstI	GAGCTC	1 cut(s)	882
StuI	AGGCCT	1 cut(s)	764
StyD4I	CCNGG	3 cut(s)	672, 975, 1000
StyI	CCWWGG	2 cut(s)	315, 513
TaaI	ACNGT	2 cut(s)	184, 661
TaiI	ACGT	4 cut(s)	279, 366, 480, 749
TaqI	TCGA	5 cut(s)	201, 465, 591, 612, 795
TasI	AATT	1 cut(s)	991
TatI	WGTACW	1 cut(s)	678
TauI	GCSGC	8 cut(s)	113, 116, 119, 122, 312, 392, 671, 895
TfiI	GAWTC	1 cut(s)	870
TseFI	GTSAC	1 cut(s)	818
TseI	GCWGC	5 cut(s)	107, 320, 392, 850, 853
Tsp45I	GTSAC	1 cut(s)	818
TspDTI	ATGAA	3 cut(s)	25, 225, 238
TspGWI	ACGGA	1 cut(s)	322
VpaK11BI	GGWCC	2 cut(s)	723, 802
XapI	RAATTY	1 cut(s)	991
XmiI	GTMKAC	2 cut(s)	585, 612
XspI	CTAG	1 cut(s)	905
ZrmI	AGTACT	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.