pycom15g02880

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
1776024 .. 1777106
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g02880.1

Sequence Viewer

Length: 1083 bp
ATGACCACCCCACTTCCACTCCTCCTCCTCCTCCCCTTCCTCCTCTTCCTCTCCCCTGCCATGGCAACCCATGCCGCCACCACCATGACCGCCCAACAGTTTAGAGAAGCACCTCAGTTCTATAACTCCCAAGACTGCCCTTCAATCACCACCCTCCCCGACGATGACGTGGACCCCGACGGATCAGACGACGGCCACATGATTTGCTCTCCTCAAGCAGTCCACGTGGCAATGACTCTCGACACCGCCTACATCCGCGGCTCCATGGCCGCGATCCTCTCCATCCTCCAACACTCCTCCTGCCCCCAAAACGCAGTCTTCCACTTCGTCGCCTCCGCCGCCGCCAACGCCTCCCACCTCCGCCAAACAATCTCCACCTCATTTCCCTACCTGAAATTCCGAATCTACTCCTTCGACGACTCCCACGTCTCCGGCCTCATCTCCATCTCCATCCGCTCCGCCCTCGACTGCCCCCTCAACTATGCTCGATCCTACCTCGCCGACCTTCTCCCCCTCTGCGTCCGCCGCGTCGTCTACCTCGACTCCGACCTCATCCTCGTCGACGACATCGCCAAGCTCTCTGCCACTTCCCTCGGAGGCGGCGCCGTCCTCGCTGCCCCGGAATACTGCAACGCCAACTTCACCTCCTACTTCACCTCTGCCTTCTGGTCCAACCCCTCCCTCTCCCTCACCTTCGCCGACCGCCACGCCTGCTACTTTAACACTGGCGTCATGGTCATCGACCTCGACCGGTGGCGACGCGGCGACTACACCGCAAAAATAGAGGAGTGGATGCATCTCCAGAAGAGAATGCGGATCTACGAGCTCGGATCCCTCCCGCCGTTTCTTTTGGTGTTCGCCGGGAAAATCGCGCCTGTGGAGCACCGGTGGAACCAGCACGGGCTCGGCGGCGATAACTTCAGGGGGCTTTGTCGGGATCTACATCCGGGCGCAGTGAGCCTGCTGCATTGGAGCGGGAAGGGGAAGCCGTGGGCCCGGCTGGAGGCCAATCGGCCCTGCCCGCTCGATGCTCTCTGGGCTCCTTACGATCTCTTGGAAACGCCATTTGTTCTGGATTCGTGA

Protein Analysis

361

Amino Acids

39.92

Weight (kDa)

5.86

Isoelectric Point (pI)

45.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 75 - 333 4.1e-48 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013972)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19300
fragaria_vesca FvH4_2g40370
malus_domestica MD08G1036800.v1.1
prunus_persica Prupe.1G384100_v2.0.a1
pyrus_communis pycom08g02940 pycom15g02880
rosa_chinensis RchiOBHm_Chr6g0300381
rosa_laevigata RLG00000011343
rosa_multiflora Rmu_co8373719.1_g000001 Rmu_sc0001670.1_g000014
rosa_roxburghii Rroxscaffold_7G00167850
rosa_rugosa Rorug06G0295500
rosa_samantha Rh6AG408200 Rh6BG415500 Rh6CG422900 Rh6DG408500
rosa_wichuraiana Rw6G035700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 425
AccB1I GGYRCC 1 cut(s) 602
AccBSI CCGCTC 3 cut(s) 456, 975, 1024
AccI GTMKAC 2 cut(s) 534, 561
AccII CGCG 5 cut(s) 258, 272, 528, 762, 872
AclWI GGATC 7 cut(s) 190, 268, 483, 824, 825, 838, 945
AcoI YGGCCR 2 cut(s) 193, 267
AcsI RAATTY 1 cut(s) 395
AcuI CTGAAG 1 cut(s) 904
AcvI CACGTG 1 cut(s) 226
AcyI GRCGYC 2 cut(s) 603, 729
AfiI CCNNNNNNNGG 2 cut(s) 61, 1003
AgeI ACCGGT 2 cut(s) 750, 885
AgsI TTSAA 1 cut(s) 144
AjiI CACGTC 2 cut(s) 169, 427
AluBI AGCT 2 cut(s) 577, 826
AluI AGCT 2 cut(s) 577, 826
Alw21I GWGCWC 2 cut(s) 828, 885
Alw26I GTCTC 1 cut(s) 433
AlwI GGATC 7 cut(s) 190, 268, 483, 824, 825, 838, 945
AoxI GGCC 6 cut(s) 193, 267, 433, 993, 1005, 1013
ApaI GGGCCC 1 cut(s) 997
ApeKI GCWGC 2 cut(s) 614, 964
ApoI RAATTY 1 cut(s) 395
AsiGI ACCGGT 2 cut(s) 750, 885
AspLEI GCGC 3 cut(s) 605, 874, 953
AspS9I GGNCC 5 cut(s) 172, 669, 993, 994, 1014
AsuC2I CCSGG 4 cut(s) 620, 862, 948, 997
AsuHPI GGTGA 4 cut(s) 139, 634, 646, 682
AvaII GGWCC 2 cut(s) 172, 669
BaeGI GKGCMC 1 cut(s) 997
BamHI GGATCC 1 cut(s) 830
BanI GGYRCC 1 cut(s) 602
BanII GRGCYC 4 cut(s) 828, 906, 997, 1042
BbrPI CACGTG 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 310
Bbv12I GWGCWC 2 cut(s) 828, 885
BbvI GCAGC 2 cut(s) 601, 951
BccI CCATC 3 cut(s) 290, 452, 458
BceAI ACGGC 4 cut(s) 208, 590, 826, 973
BcnI CCSGG 4 cut(s) 620, 862, 948, 997
BcoDI GTCTC 1 cut(s) 433
BfoI RGCGCY 1 cut(s) 606
Bme1390I CCNGG 4 cut(s) 620, 862, 948, 997
Bme18I GGWCC 2 cut(s) 172, 669
BmgBI CACGTC 2 cut(s) 169, 427
BmgT120I GGNCC 5 cut(s) 172, 669, 993, 994, 1014
BmiI GGNNCC 7 cut(s) 174, 262, 604, 832, 893, 995, 1041
BmrFI CCNGG 4 cut(s) 620, 862, 948, 997
BmsI GCATC 3 cut(s) 783, 805, 1018
BpiI GAAGAC 1 cut(s) 310
BpmI CTGGAG 2 cut(s) 785, 1022
BpuEI CTTGAG 1 cut(s) 198
BpuMI CCSGG 4 cut(s) 620, 862, 948, 997
BsaAI YACGTR 1 cut(s) 226
BsaBI GATNNNNATC 1 cut(s) 942
BsaHI GRCGYC 2 cut(s) 603, 729
BsaJI CCNNGG 6 cut(s) 60, 256, 264, 592, 618, 989
BsaWI WCCGGW 2 cut(s) 750, 885
BsaXI ACNNNNNCTCC 9 cut(s) 9, 33, 39, 527, 557, 629, 659, 872, 902
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 1003
Bse118I RCCGGY 2 cut(s) 750, 885
Bse1I ACTGG 1 cut(s) 730
Bse3DI GCAATG 1 cut(s) 237
Bse8I GATNNNNATC 1 cut(s) 942
BseDI CCNNGG 6 cut(s) 60, 256, 264, 592, 618, 989
BseGI GGATG 6 cut(s) 252, 282, 450, 552, 798, 943
BseJI GATNNNNATC 1 cut(s) 942
BseLI CCNNNNNNNGG 2 cut(s) 61, 1003
BseMI GCAATG 1 cut(s) 237
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 730
BseRI GAGGAG 8 cut(s) 11, 14, 17, 20, 32, 201, 286, 800
BseSI GKGCMC 1 cut(s) 997
BseXI GCAGC 2 cut(s) 601, 951
Bsh1236I CGCG 5 cut(s) 258, 272, 528, 762, 872
Bsh1285I CGRYCG 2 cut(s) 703, 751
BshFI GGCC 6 cut(s) 195, 269, 435, 995, 1007, 1015
BshNI GGYRCC 1 cut(s) 602
BshTI ACCGGT 2 cut(s) 750, 885
BsiEI CGRYCG 2 cut(s) 703, 751
BsiHKAI GWGCWC 2 cut(s) 828, 885
BsiSI CCGG 7 cut(s) 432, 620, 751, 861, 886, 947, 997
BslI CCNNNNNNNGG 2 cut(s) 61, 1003
BsmAI GTCTC 1 cut(s) 433
BsmBI CGTCTC 1 cut(s) 433
BsmI GAATGC 1 cut(s) 816
BsnI GGCC 6 cut(s) 195, 269, 435, 995, 1007, 1015
Bsp120I GGGCCC 1 cut(s) 993
Bsp1286I GDGCHC 5 cut(s) 828, 885, 906, 997, 1042
Bsp143I GATC 7 cut(s) 182, 273, 488, 816, 830, 937, 1048
Bsp19I CCATGG 2 cut(s) 60, 264
BspANI GGCC 6 cut(s) 195, 269, 435, 995, 1007, 1015
BspCNI CTCAG 1 cut(s) 127
BspFNI CGCG 5 cut(s) 258, 272, 528, 762, 872
BspLI GGNNCC 7 cut(s) 174, 262, 604, 832, 893, 995, 1041
BspPI GGATC 7 cut(s) 190, 268, 483, 824, 825, 838, 945
BspT107I GGYRCC 1 cut(s) 602
BsrBI CCGCTC 3 cut(s) 456, 975, 1024
BsrDI GCAATG 1 cut(s) 237
BsrFI RCCGGY 2 cut(s) 750, 885
BsrI ACTGG 1 cut(s) 730
BssAI RCCGGY 2 cut(s) 750, 885
BssECI CCNNGG 6 cut(s) 60, 256, 264, 592, 618, 989
BssMI GATC 7 cut(s) 182, 273, 488, 816, 830, 937, 1048
BssNI GRCGYC 2 cut(s) 603, 729
BssT1I CCWWGG 2 cut(s) 60, 264
Bst4CI ACNGT 1 cut(s) 99
Bst6I CTCTTC 2 cut(s) 50, 800
BstACI GRCGYC 2 cut(s) 603, 729
BstAPI GCANNNNNTGC 1 cut(s) 71
BstBAI YACGTR 1 cut(s) 226
BstC8I GCNNGC 3 cut(s) 712, 962, 1022
BstDEI CTNAG 1 cut(s) 114
BstDSI CCRYGG 4 cut(s) 60, 256, 264, 989
BstF5I GGATG 6 cut(s) 252, 282, 450, 552, 798, 943
BstFNI CGCG 5 cut(s) 258, 272, 528, 762, 872
BstH2I RGCGCY 1 cut(s) 606
BstHHI GCGC 3 cut(s) 605, 874, 953
BstKTI GATC 7 cut(s) 185, 276, 491, 819, 833, 940, 1051
BstMAI GTCTC 1 cut(s) 433
BstMBI GATC 7 cut(s) 182, 273, 488, 816, 830, 937, 1048
BstMCI CGRYCG 2 cut(s) 703, 751
BstSCI CCNGG 4 cut(s) 618, 860, 946, 995
BstSLI GKGCMC 1 cut(s) 997
BstUI CGCG 5 cut(s) 258, 272, 528, 762, 872
BstV1I GCAGC 2 cut(s) 601, 951
BstV2I GAAGAC 1 cut(s) 310
BstX2I RGATCY 3 cut(s) 816, 830, 937
BstYI RGATCY 3 cut(s) 816, 830, 937
BsuRI GGCC 6 cut(s) 195, 269, 435, 995, 1007, 1015
BtgI CCRYGG 4 cut(s) 60, 256, 264, 989
BtgZI GCGATG 1 cut(s) 553
BtrI CACGTC 2 cut(s) 169, 427
BtsCI GGATG 6 cut(s) 252, 282, 450, 552, 798, 943
BtsI GCAGTG 1 cut(s) 960
BtsIMutI CAGTG 2 cut(s) 723, 960
Cac8I GCNNGC 3 cut(s) 712, 962, 1022
CfoI GCGC 3 cut(s) 605, 874, 953
Cfr10I RCCGGY 2 cut(s) 750, 885
Cfr13I GGNCC 5 cut(s) 172, 669, 993, 994, 1014
Cfr42I CCGCGG 1 cut(s) 259
CseI GACGC 4 cut(s) 508, 517, 718, 768
CspAI ACCGGT 2 cut(s) 750, 885
CspCI CAANNNNNGTGG 2 cut(s) 185, 220
CviAII CATG 6 cut(s) 61, 71, 85, 199, 265, 733
DdeI CTNAG 1 cut(s) 114
DinI GGCGCC 1 cut(s) 604
DpnI GATC 7 cut(s) 184, 275, 490, 818, 832, 939, 1050
DpnII GATC 7 cut(s) 182, 273, 488, 816, 830, 937, 1048
DrdI GACNNNNNNGTC 1 cut(s) 425
DseDI GACNNNNNNGTC 1 cut(s) 425
EaeI YGGCCR 2 cut(s) 193, 267
Eam1104I CTCTTC 2 cut(s) 50, 800
EarI CTCTTC 2 cut(s) 50, 800
EciI GGCGGA 4 cut(s) 325, 350, 448, 512
Ecl136II GAGCTC 1 cut(s) 826
Eco130I CCWWGG 2 cut(s) 60, 264
Eco24I GRGCYC 4 cut(s) 828, 906, 997, 1042
Eco47I GGWCC 2 cut(s) 172, 669
Eco53kI GAGCTC 1 cut(s) 826
Eco57I CTGAAG 1 cut(s) 904
Eco72I CACGTG 1 cut(s) 226
EcoICRI GAGCTC 1 cut(s) 826
EcoT14I CCWWGG 2 cut(s) 60, 264
EcoT22I ATGCAT 1 cut(s) 798
EcoT38I GRGCYC 4 cut(s) 828, 906, 997, 1042
EgeI GGCGCC 1 cut(s) 604
EheI GGCGCC 1 cut(s) 604
ErhI CCWWGG 2 cut(s) 60, 264
Esp3I CGTCTC 1 cut(s) 433
FaeI CATG 6 cut(s) 64, 74, 88, 202, 268, 736
FaiI YATR 8 cut(s) 62, 72, 86, 123, 200, 266, 483, 734
FatI CATG 6 cut(s) 60, 70, 84, 198, 264, 732
FauI CCCGC 3 cut(s) 846, 968, 1029
FblI GTMKAC 2 cut(s) 534, 561
FokI GGATG 6 cut(s) 239, 269, 437, 539, 805, 930
FriOI GRGCYC 4 cut(s) 828, 906, 997, 1042
GlaI GCGC 3 cut(s) 604, 873, 952
GsuI CTGGAG 2 cut(s) 785, 1022
HaeII RGCGCY 1 cut(s) 606
HaeIII GGCC 6 cut(s) 195, 269, 435, 995, 1007, 1015
HapII CCGG 7 cut(s) 432, 620, 751, 861, 886, 947, 997
HgaI GACGC 4 cut(s) 508, 517, 718, 768
HhaI GCGC 3 cut(s) 605, 874, 953
Hin1I GRCGYC 2 cut(s) 603, 729
Hin1II CATG 6 cut(s) 64, 74, 88, 202, 268, 736
Hin6I GCGC 3 cut(s) 603, 872, 951
HinP1I GCGC 3 cut(s) 603, 872, 951
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HinfI GANTC 5 cut(s) 235, 402, 419, 542, 1076
HpaII CCGG 7 cut(s) 432, 620, 751, 861, 886, 947, 997
HphI GGTGA 4 cut(s) 139, 634, 646, 682
Hpy166II GTNNAC 4 cut(s) 172, 223, 535, 562
Hpy188I TCNGA 5 cut(s) 187, 401, 547, 596, 830
Hpy188III TCNNGA 5 cut(s) 239, 802, 935, 1073, 1080
Hpy8I GTNNAC 4 cut(s) 172, 223, 535, 562
Hpy99I CGWCG 9 cut(s) 164, 182, 194, 332, 419, 533, 563, 566, 762
HpyAV CCTTC 7 cut(s) 46, 150, 421, 515, 673, 703, 973
HpyCH4III ACNGT 1 cut(s) 99
HpyCH4IV ACGT 3 cut(s) 168, 225, 426
HpyCH4V TGCA 3 cut(s) 630, 796, 967
HpyF3I CTNAG 1 cut(s) 114
HpySE526I ACGT 3 cut(s) 168, 225, 426
Hsp92I GRCGYC 2 cut(s) 603, 729
Hsp92II CATG 6 cut(s) 64, 74, 88, 202, 268, 736
HspAI GCGC 3 cut(s) 603, 872, 951
KasI GGCGCC 1 cut(s) 602
KspI CCGCGG 1 cut(s) 259
Kzo9I GATC 7 cut(s) 182, 273, 488, 816, 830, 937, 1048
LmnI GCTCC 5 cut(s) 266, 461, 880, 972, 1045
Lsp1109I GCAGC 2 cut(s) 601, 951
LweI GCATC 3 cut(s) 783, 805, 1018
MaeII ACGT 3 cut(s) 168, 225, 426
MalI GATC 7 cut(s) 184, 275, 490, 818, 832, 939, 1050
MbiI CCGCTC 3 cut(s) 456, 975, 1024
MboI GATC 7 cut(s) 182, 273, 488, 816, 830, 937, 1048
MboII GAAGA 3 cut(s) 37, 310, 817
MflI RGATCY 3 cut(s) 816, 830, 937
MhlI GDGCHC 5 cut(s) 828, 885, 906, 997, 1042
MluCI AATT 1 cut(s) 395
Mly113I GGCGCC 1 cut(s) 603
MlyI GAGTC 3 cut(s) 229, 413, 536
MmeI TCCRAC 3 cut(s) 313, 570, 696
Mph1103I ATGCAT 1 cut(s) 798
MseI TTAA 1 cut(s) 720
MslI CAYNNNNRTG 1 cut(s) 83
MspA1I CMGCKG 1 cut(s) 258
MspI CCGG 7 cut(s) 432, 620, 751, 861, 886, 947, 997
MspR9I CCNGG 4 cut(s) 620, 862, 948, 997
Mva1269I GAATGC 1 cut(s) 816
MvnI CGCG 5 cut(s) 258, 272, 528, 762, 872
NarI GGCGCC 1 cut(s) 603
NciI CCSGG 4 cut(s) 620, 862, 948, 997
NcoI CCATGG 2 cut(s) 60, 264
NdeII GATC 7 cut(s) 182, 273, 488, 816, 830, 937, 1048
NlaIII CATG 6 cut(s) 64, 74, 88, 202, 268, 736
NlaIV GGNNCC 7 cut(s) 174, 262, 604, 832, 893, 995, 1041
NmeAIII GCCGAG 1 cut(s) 885
NsiI ATGCAT 1 cut(s) 798
PcsI WCGNNNNNNNCGW 4 cut(s) 174, 186, 423, 537
PctI GAATGC 1 cut(s) 816
PfeI GAWTC 2 cut(s) 402, 1076
PinAI ACCGGT 2 cut(s) 750, 885
PleI GAGTC 3 cut(s) 229, 413, 536
PluTI GGCGCC 1 cut(s) 606
PmaCI CACGTG 1 cut(s) 226
PmlI CACGTG 1 cut(s) 226
PpsI GAGTC 3 cut(s) 229, 413, 536
Ppu21I YACGTR 1 cut(s) 226
Psp124BI GAGCTC 1 cut(s) 828
PspCI CACGTG 1 cut(s) 226
PspN4I GGNNCC 7 cut(s) 174, 262, 604, 832, 893, 995, 1041
PspOMI GGGCCC 1 cut(s) 993
PspPI GGNCC 5 cut(s) 172, 669, 993, 994, 1014
PsuI RGATCY 3 cut(s) 816, 830, 937
RseI CAYNNNNRTG 1 cut(s) 83
SacI GAGCTC 1 cut(s) 828
SacII CCGCGG 1 cut(s) 259
SalI GTCGAC 1 cut(s) 560
SaqAI TTAA 1 cut(s) 720
Sau3AI GATC 7 cut(s) 182, 273, 488, 816, 830, 937, 1048
Sau96I GGNCC 5 cut(s) 172, 669, 993, 994, 1014
SchI GAGTC 3 cut(s) 229, 413, 536
ScrFI CCNGG 4 cut(s) 620, 862, 948, 997
SduI GDGCHC 5 cut(s) 828, 885, 906, 997, 1042
SfaNI GCATC 3 cut(s) 783, 805, 1018
SfoI GGCGCC 1 cut(s) 604
Sfr303I CCGCGG 1 cut(s) 259
SgrAI CRCCGGYG 1 cut(s) 885
SgrBI CCGCGG 1 cut(s) 259
SgrDI CGTCGACG 1 cut(s) 560
SinI GGWCC 2 cut(s) 172, 669
SmiMI CAYNNNNRTG 1 cut(s) 83
SmlI CTYRAG 1 cut(s) 213
SmoI CTYRAG 1 cut(s) 213
Sse9I AATT 1 cut(s) 395
SspDI GGCGCC 1 cut(s) 602
SstI GAGCTC 1 cut(s) 828
StyD4I CCNGG 4 cut(s) 618, 860, 946, 995
StyI CCWWGG 2 cut(s) 60, 264
TaaI ACNGT 1 cut(s) 99
TaiI ACGT 3 cut(s) 171, 228, 429
TaqI TCGA 9 cut(s) 240, 414, 465, 487, 540, 561, 741, 747, 1026
TasI AATT 1 cut(s) 395
TauI GCSGC 9 cut(s) 77, 261, 272, 341, 344, 528, 603, 765, 912
TfiI GAWTC 2 cut(s) 402, 1076
Tru1I TTAA 1 cut(s) 720
Tru9I TTAA 1 cut(s) 720
TscAI CASTG 2 cut(s) 730, 960
TseI GCWGC 2 cut(s) 614, 964
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 2 cut(s) 730, 960
VpaK11BI GGWCC 2 cut(s) 172, 669
XapI RAATTY 1 cut(s) 395
XmiI GTMKAC 2 cut(s) 534, 561
Zsp2I ATGCAT 1 cut(s) 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.