Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0013972

Physical Location & Seq

Genomic Coordinates Forward (+)

44786142 .. 44789924

Gene Structure 3783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0295500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3642 bp

ATGAAAGGAGTTCAGAAGCCTCCTCCTCTTCTTGTCCTTCATATTCTCTTAATCTCTTTGCATCTATTGAAGGCCTCCTCATCACCAGGAGCAGAGGCTGAAGCTCTCATAAGCTGGAAGAACAGCTTTGATTATGCACCACCTTCTCTCAATTCGTGGTCCTTCACAAACATAAACAACCTCTGCTACTGGACTGCCATTGTGTGCGATCCCAACACCAAAACAGTCTCTGAAATTGATCTCTCAAATTTCAGCATCACTGCAACACTAACTGAGTTCAATTTCAACAAGTTTCTCGATCTCATTCTTTTCAACCTCAACGGTAACAGTTTCACAGGGTCTATACCATCTTCCATTGGCAAACTTGGCAAGCTAGAAGTCTTGGATTTGGGCAACAATCTGTTTGGACAGGAAGTGCCTGCGGAAATAGGCAAGTTAACGGAGCTTCAGTTTCTAAGTCTCTCCAACAACAATCTCAATGGTAGCATTCCTTACCAGCTGGACAATCTCAAAAAGGTACAATATTTGCTTCTTGGAAGTAACCACTTAGAGCCTGCTGATTGGTCTAAATTCTCAGGCTTTCCTGTTTTGACATACCTTGATCTTTGTTTGAACAGTTTAGATTCAGAATTCCCAGAATTTATATCTGAATGTAGGAATTTGACATTCCTGGATTTGTCTCAAAATGCTTTGACTGGTCAAATACCAGAATTGGTATTTACCAATCTGGTCAAGCTTGAATATCTCAATCTCACCAATAACCAATTCCAAGGGCCAATGCCATATAACTTTCCCAACCTCAAACATCTTTATTTGGGAGTGAACGACTTTAGTGGTCCAATTCCTGAAGATATAAGTTTGTTATCTGGTCTGGAAATTTTTGAAGTGCTTAGCAATTCCCTTGAAGGCAAAATCCCATCCTCTGTAGGCCAACTTAAGCAGCTTCAGCACCTTGACCTTAGAGACAATTCCTTGAACTCTTCAATCCCTTCTGAGCTTGGTTCTTGTACGAACCTCACTTTCTTGGCATTGGCTTTGAATAAACTCAATGGGGAACTGCCTCTGTCCTTGTCCAATCTCAACAGCTTGATGGAGTTGGAGTTATCTGATAATCTGTTTACTGGGCCAATCTTGCCTTCTCTGGTCTCCAATTGGACTAAAATGATCTCTTTGCAGCTCCAAAACAATAGCTTCAGTGGGAATATTCCACCAGAATTAGGCCTGTTAACGAAACTTGATCTCCTCTGGCTGCATAACAACAATTTCTCTGGATCAATTCCCTCAGAGATAGGAAACTTGCAAGTTTTGACAAATTTGAGTCTCTCTAGAAACCAGCTCTCTGGGCCGATTCCTATGAAATTCTGGAACCTCACAAATCTTCAATACGTGGACTTCTTCAACAACAATCTCTGCGGCACAATCCCCCCAGAGATTGGAAACATGAGTTCCATAGTTTCCTTTGATGTCTGCACAAACCAACTTGAAGGGGAGTTGCCAAAAACTATTTCTTACCTCAGAAAACTAGAGCAGTTTTTCGTTTTCAGTAATAGGTTTTCGGGGACCATTCCCCGTGATTTCGGGAAGTATAGTCCTAACTTGAGAGCTGTCAGCTTATGGCAGAACAGCTTCTCTGGAGAATTGCCGCCTGAGTTGTGTAGTGGATTTGCTTTGCAAAGATTGAGAGTGCACATGAACAACTTCACAGGGCCATTGCCTGAGTGCTTGAGAAATTGTTCAGCATTAACAATTGTCCGGCTGGAAGTAAACCAATTCACCGGAAACATTACCAATGCATTTGGTGTTCATCCCCGTCTTGCATCAATTCATCTTAGTCAAAACAAGTTCGTTGGTCAACTCTCGCCACAATGGGGAGAATGCAAAAACATCACGGATATGCAAATGGACGGAAATAGAATTTCGGGTCAAATCCCACCTGAGTTTGGTCAGTTGACACAATTGCAGTATTTAAACCTAGGCTCTAATGAATTCAGTGGGGAATTTCCAGTTTCCATTGGGAATCTAAGCTTGTTGTTCACTCTTAATCTCAGCAGGAACAACTTGACGGGAACTATCCCTTATGTTCTAGGCAAATTGACTAAGCTCGAGCTTCTTGATTTGTCTGATAATAATTTTACAGGGGTATTACCAGTCGACCCTGGAACGTTTGAGAGGTTAACAAGCTTGAACATAAGCCACAACAAATTATCAGGTGGAATACCAGAGGAGATTGGTAATCTACACCTGCAATACTTGTTGGACCTAAGCAGCAATACATTCTCGGGATCACTACCATTAAACCTTGCCAAGCTTATAATGCTGGAGATTCTTAATGTCTCGCATAACCAACTCTCCGGGAATATCCCATCAACATTTTCCAGAATGGTTAGTCTTGTCGGCATTGATTTTTCTTACAACAACTTGACAGGTCCAATTCCAACTGGTGGCATTTTCCAAAAGAAGCTTCCTAATAATGCTTTCATTGGAAATAGTGGTTTGTGTGGTGAAACAGAGGGACTAACTCCATGCACTTCGGGTCTCAGAAACTCCAACAAGAAAATTCTTGTTGGCGTCCTTGTTCCCATTTGTGGTTTATTGCTGCTGGTGACCATATCTGCTGTAATCCTTAAGTTCTGCAAGAAATCAAAGCCTGGAGAAATCGATCATCCTAAGATGTCTAAAAGTTTTGATTCAAGTATTTGGGGAAGACATGGTAAACTTACATTTTCTGAAATCATCACTGCCACCGAGAACTTTGATGAAAAGTACCTCATTGGAAGAGGAGGTTTTGGAAGTGTCTACAAGGCTGTGTTGGACAGAGGCAGAGTCGTTGCAGTTAAGAAATTGAATATGTCAGTAGATTCTAGTGACGACATTCCAGAATTGAATCGCAAGAGTTTTGAGAATGAGATAAGAACCTTGACAGAAGTGAGGCACAGAAATGTAATAAAACTTTATGGTTTCTGTTCCTGGAAGGGGTGCTTGTACTTGGTGTATGAATATGCAGAGAGAGGCAGTTTGAAAATGGTATTGTATGGAGTGGAGGGCGAAGCAGATGTACTTGGCTGGGGCACAAGGGTGAAAATTGTGCAAGGAATAGCTCATGCTATTTCTCACTTGCATAATGACTGCTCTCACCAAATCGTTCACCGTGACATAACTTTGAGCAACATATTACTAGATCGGGATTTTGTGCCACGCCTATCAGACTTTGGAATAGCAAGACTATTGAGCTCAGATTCCTCAAACTGGACTGCTGTAGCGGGGTCTTATGGCTACATGGCTCCAGAGCTCGCATTCACAATGCAAGTGACATATAAGTGTGATGTATACAGCTTTGGAGTGGTGGCATTAGAAATCATGATGGGAAGGCATCCAGGGGAGCTACTGACTTCTCTATCGGAAAATGGAGATATGCTTTTGAAGGATTTGCTAGACCAACGACTTCCGTCTCCTTCAGGTCAATTAGCAGGGCGAGTGGTTTCCATGGTGACATTGGCCTTGACTTGCGCCAGCACTAATCCGGATTCACGACCCACCACGCATTATGTGGCAAAAGAACTATCGTTGACCAGGACATGGATTTGCCTCTCTGAGCCGTTAGCCACGATAACCATCAATAAGTTGGCAAGTTTTCATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003002 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005975 GO:0005976 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009987 GO:0010051 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0032501 GO:0032502 GO:0032504 GO:0033692 GO:0034637 GO:0034645 GO:0042545 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045491 GO:0045492 GO:0047262 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0052386 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

1213

Amino Acids

133.87

Weight (kDa)

5.81

Isoelectric Point (pI)

33.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	31 - 70	3.6e-06	Leucine rich repeat N-terminal domain
LRR_14	PF23598	102 - 178	2.7e-07	Leucine-rich repeat region
LRR_8	PF13855	174 - 231	2.1e-07	Leucine rich repeat
LRR_8	PF13855	196 - 256	3.6e-08	Leucine rich repeat
LRR_14	PF23598	309 - 418	1.6e-06	Leucine-rich repeat region
LRR_14	PF23598	406 - 616	9.7e-09	Leucine-rich repeat region
LRR_14	PF23598	647 - 728	1.6e-07	Leucine-rich repeat region
Pkinase	PF00069	920 - 1183	5.3e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	923 - 1187	1.4e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0013972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19300
fragaria_vesca	FvH4_2g40370
malus_domestica	MD08G1036800.v1.1
prunus_persica	Prupe.1G384100_v2.0.a1
pyrus_communis	pycom08g02940 pycom15g02880
rosa_chinensis	RchiOBHm_Chr6g0300381
rosa_laevigata	RLG00000011343
rosa_multiflora	Rmu_co8373719.1_g000001 Rmu_sc0001670.1_g000014
rosa_roxburghii	Rroxscaffold_7G00167850
rosa_rugosa	Rorug06G0295500
rosa_samantha	Rh6AG408200 Rh6BG415500 Rh6CG422900 Rh6DG408500
rosa_wichuraiana	Rw6G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2312
AarI	CACCTGC	1 cut(s)	2250
Acc36I	ACCTGC	1 cut(s)	2250
AccB7I	CCANNNNNTGG	3 cut(s)	1433, 2441, 3576
AccI	GTMKAC	3 cut(s)	2151, 2796, 3327
AccIII	TCCGGA	1 cut(s)	3520
AciI	CCGC	4 cut(s)	422, 1413, 1643, 3260
AclI	AACGTT	1 cut(s)	2162
AclWI	GGATC	3 cut(s)	203, 1279, 2290
AcuI	CTGAAG	6 cut(s)	120, 431, 867, 929, 1177, 3438
AcyI	GRCGYC	1 cut(s)	2568
AfaI	GTAC	5 cut(s)	519, 1009, 2765, 2984, 3057
AfiI	CCNNNNNNNGG	9 cut(s)	1217, 1433, 1868, 1940, 2441, 2585, 2973, 3246, 3576
AflII	CTTAAG	2 cut(s)	935, 2624
AjnI	CCWGG	7 cut(s)	85, 669, 2155, 2647, 2966, 3373, 3569
AjuI	GAANNNNNNNTTGG	8 cut(s)	749, 781, 1120, 1152, 1489, 1521, 2445, 2477
AleI	CACNNNNGTG	1 cut(s)	3074
Alw21I	GWGCWC	3 cut(s)	1689, 3233, 3291
Alw26I	GTCTC	9 cut(s)	232, 464, 684, 957, 1150, 1325, 2338, 2540, 3453
Alw44I	GTGCAC	1 cut(s)	1685
AlwI	GGATC	3 cut(s)	203, 1279, 2290
AlwNI	CAGNNNCTG	2 cut(s)	98, 230
Ama87I	CYCGRG	2 cut(s)	2102, 2278
Aor13HI	TCCGGA	1 cut(s)	3520
AoxI	GGCC	8 cut(s)	72, 773, 928, 1124, 1219, 1343, 1706, 3495
ApaLI	GTGCAC	1 cut(s)	1685
ApeKI	GCWGC	5 cut(s)	940, 1174, 1249, 2265, 2596
Asp700I	GAANNNNTTC	3 cut(s)	1625, 1697, 1732
AspA2I	CCTAGG	1 cut(s)	1972
AspLEI	GCGC	1 cut(s)	3509
AspS9I	GGNCC	9 cut(s)	159, 773, 836, 1124, 1343, 1560, 1706, 2257, 2426
AsuC2I	CCSGG	1 cut(s)	2353
AsuHPI	GGTGA	9 cut(s)	75, 745, 1765, 2513, 2614, 3088, 3125, 3137, 3499
AvaI	CYCGRG	2 cut(s)	2102, 2278
AvaII	GGWCC	5 cut(s)	159, 836, 1560, 2257, 2426
AvrII	CCTAGG	1 cut(s)	1972
BaeGI	GKGCMC	2 cut(s)	1689, 3071
BanII	GRGCYC	2 cut(s)	3233, 3291
BarI	GAAGNNNNNNTAC	2 cut(s)	3039, 3071
BbsI	GAAGAC	1 cut(s)	2710
Bbv12I	GWGCWC	3 cut(s)	1689, 3233, 3291
BbvI	GCAGC	5 cut(s)	952, 1186, 1236, 2277, 2583
BccI	CCATC	6 cut(s)	355, 925, 1084, 2371, 3355, 3620
BceAI	ACGGC	1 cut(s)	3580
BciT130I	CCWGG	7 cut(s)	87, 671, 2157, 2649, 2968, 3375, 3571
BcnI	CCSGG	1 cut(s)	2353
BcoDI	GTCTC	9 cut(s)	232, 464, 684, 957, 1150, 1325, 2338, 2540, 3453
BfaI	CTAG	9 cut(s)	374, 1326, 1523, 1973, 2084, 2862, 3176, 3431, 3640
BfmI	CTRYAG	2 cut(s)	924, 3255
BfrI	CTTAAG	2 cut(s)	935, 2624
BfuAI	ACCTGC	1 cut(s)	2250
BisI	GCNGC	7 cut(s)	941, 1175, 1250, 1414, 1643, 2266, 2597
BlnI	CCTAGG	1 cut(s)	1972
BlpI	GCTNAGC	1 cut(s)	890
BlsI	GCNGC	7 cut(s)	942, 1176, 1251, 1415, 1644, 2267, 2598
Bme1390I	CCNGG	8 cut(s)	87, 671, 2157, 2353, 2649, 2968, 3375, 3571
Bme18I	GGWCC	5 cut(s)	159, 836, 1560, 2257, 2426
BmeT110I	CYCGRG	2 cut(s)	2102, 2278
BmgT120I	GGNCC	9 cut(s)	159, 773, 836, 1124, 1343, 1560, 1706, 2257, 2426
BmiI	GGNNCC	3 cut(s)	1367, 1561, 3282
BmrFI	CCNGG	8 cut(s)	87, 671, 2157, 2353, 2649, 2968, 3375, 3571
BmrI	ACTGGG	1 cut(s)	1131
BmsI	GCATC	4 cut(s)	70, 264, 1826, 3379
BmuI	ACTGGG	1 cut(s)	1131
BoxI	GACNNNNGTC	1 cut(s)	3445
BpiI	GAAGAC	1 cut(s)	2710
BpmI	CTGGAG	4 cut(s)	1653, 2339, 2670, 3267
Bpu10I	CCTNAGC	1 cut(s)	2261
Bpu1102I	GCTNAGC	1 cut(s)	890
BpuEI	CTTGAG	2 cut(s)	1618, 1744
BpuMI	CCSGG	1 cut(s)	2353
Bsa29I	ATCGAT	1 cut(s)	2658
BsaAI	YACGTR	1 cut(s)	1387
BsaBI	GATNNNNATC	1 cut(s)	3611
BsaHI	GRCGYC	1 cut(s)	2568
BsaI	GGTCTC	2 cut(s)	1150, 2540
BsaJI	CCNNGG	5 cut(s)	769, 1972, 2155, 3374, 3483
BsaWI	WCCGGW	2 cut(s)	1775, 3520
BsaXI	ACNNNNNCTCC	8 cut(s)	434, 464, 1085, 1115, 1224, 1254, 2333, 2363
Bsc4I	CCNNNNNNNGG	9 cut(s)	1217, 1433, 1868, 1940, 2441, 2585, 2973, 3246, 3576
Bse1I	ACTGG	7 cut(s)	194, 700, 1126, 2003, 2147, 2443, 3251
Bse3DI	GCAATG	1 cut(s)	1709
Bse8I	GATNNNNATC	1 cut(s)	3611
BseAI	TCCGGA	1 cut(s)	3520
BseBI	CCWGG	7 cut(s)	87, 671, 2157, 2649, 2968, 3375, 3571
BseCI	ATCGAT	1 cut(s)	2658
BseDI	CCNNGG	5 cut(s)	769, 1972, 2155, 3374, 3483
BseGI	GGATG	4 cut(s)	917, 1804, 2662, 3370
BseJI	GATNNNNATC	1 cut(s)	3611
BseLI	CCNNNNNNNGG	9 cut(s)	1217, 1433, 1868, 1940, 2441, 2585, 2973, 3246, 3576
BseMI	GCAATG	1 cut(s)	1709
BseNI	ACTGG	7 cut(s)	194, 700, 1126, 2003, 2147, 2443, 3251
BseRI	GAGGAG	6 cut(s)	12, 15, 67, 1232, 2237, 2793
BseSI	GKGCMC	2 cut(s)	1689, 3071
BseXI	GCAGC	5 cut(s)	952, 1186, 1236, 2277, 2583
BseYI	CCCAGC	1 cut(s)	3063
BsgI	GTGCAG	1 cut(s)	1453
BshFI	GGCC	8 cut(s)	74, 775, 930, 1126, 1221, 1345, 1708, 3497
BshVI	ATCGAT	1 cut(s)	2658
BsiHKAI	GWGCWC	3 cut(s)	1689, 3233, 3291
BsiHKCI	CYCGRG	2 cut(s)	2102, 2278
BsiSI	CCGG	4 cut(s)	1753, 1776, 2352, 3521
BslFI	GGGAC	2 cut(s)	1573, 2526
BslI	CCNNNNNNNGG	9 cut(s)	1217, 1433, 1868, 1940, 2441, 2585, 2973, 3246, 3576
BsmAI	GTCTC	9 cut(s)	232, 464, 684, 957, 1150, 1325, 2338, 2540, 3453
BsmBI	CGTCTC	1 cut(s)	3453
BsmFI	GGGAC	2 cut(s)	1573, 2526
BsmI	GAATGC	3 cut(s)	486, 1880, 3293
BsnI	GGCC	8 cut(s)	74, 775, 930, 1126, 1221, 1345, 1708, 3497
Bso31I	GGTCTC	2 cut(s)	1150, 2540
BsoBI	CYCGRG	2 cut(s)	2102, 2278
Bsp1286I	GDGCHC	4 cut(s)	1689, 3071, 3233, 3291
Bsp13I	TCCGGA	1 cut(s)	3520
Bsp1720I	GCTNAGC	1 cut(s)	890
Bsp19I	CCATGG	1 cut(s)	3483
BspACI	CCGC	4 cut(s)	422, 1413, 1643, 3260
BspANI	GGCC	8 cut(s)	74, 775, 930, 1126, 1221, 1345, 1708, 3497
BspDI	ATCGAT	1 cut(s)	2658
BspEI	TCCGGA	1 cut(s)	3520
BspHI	TCATGA	1 cut(s)	3357
BspLI	GGNNCC	3 cut(s)	1367, 1561, 3282
BspMI	ACCTGC	1 cut(s)	2250
BspPI	GGATC	3 cut(s)	203, 1279, 2290
BspTI	CTTAAG	2 cut(s)	935, 2624
BspTNI	GGTCTC	2 cut(s)	1150, 2540
BsrDI	GCAATG	1 cut(s)	1709
BsrI	ACTGG	7 cut(s)	194, 700, 1126, 2003, 2147, 2443, 3251
BssECI	CCNNGG	5 cut(s)	769, 1972, 2155, 3374, 3483
BssNAI	GTATAC	1 cut(s)	3328
BssNI	GRCGYC	1 cut(s)	2568
BssT1I	CCWWGG	3 cut(s)	769, 1972, 3483
Bst1107I	GTATAC	1 cut(s)	3328
Bst2UI	CCWGG	7 cut(s)	87, 671, 2157, 2649, 2968, 3375, 3571
Bst4CI	ACNGT	5 cut(s)	226, 323, 329, 617, 3149
Bst6I	CTCTTC	3 cut(s)	33, 985, 2770
BstACI	GRCGYC	1 cut(s)	2568
BstAFI	CTTAAG	2 cut(s)	935, 2624
BstBAI	YACGTR	1 cut(s)	1387
BstC8I	GCNNGC	5 cut(s)	371, 420, 555, 3291, 3511
BstDSI	CCRYGG	1 cut(s)	3483
BstEII	GGTNACC	1 cut(s)	2602
BstF5I	GGATG	4 cut(s)	917, 1804, 2662, 3370
BstHHI	GCGC	1 cut(s)	3509
BstMAI	GTCTC	9 cut(s)	232, 464, 684, 957, 1150, 1325, 2338, 2540, 3453
BstMWI	GCNNNNNNNGC	5 cut(s)	366, 946, 1132, 1342, 2314
BstNI	CCWGG	7 cut(s)	87, 671, 2157, 2649, 2968, 3375, 3571
BstPAI	GACNNNNGTC	1 cut(s)	3445
BstPI	GGTNACC	1 cut(s)	2602
BstSCI	CCNGG	8 cut(s)	85, 669, 2155, 2351, 2647, 2966, 3373, 3569
BstSFI	CTRYAG	2 cut(s)	924, 3255
BstSLI	GKGCMC	2 cut(s)	1689, 3071
BstV1I	GCAGC	5 cut(s)	952, 1186, 1236, 2277, 2583
BstV2I	GAAGAC	1 cut(s)	2710
BstXI	CCANNNNNNTGG	1 cut(s)	1340
BstZ17I	GTATAC	1 cut(s)	3328
Bsu15I	ATCGAT	1 cut(s)	2658
BsuRI	GGCC	8 cut(s)	74, 775, 930, 1126, 1221, 1345, 1708, 3497
BsuTUI	ATCGAT	1 cut(s)	2658
BtgI	CCRYGG	1 cut(s)	3483
BtsCI	GGATG	4 cut(s)	917, 1804, 2662, 3370
BtsI	GCAGTG	2 cut(s)	258, 2736
BtsIMutI	CAGTG	4 cut(s)	258, 1201, 1996, 2736
BveI	ACCTGC	1 cut(s)	2250
Cac8I	GCNNGC	5 cut(s)	371, 420, 555, 3291, 3511
CaiI	CAGNNNCTG	2 cut(s)	98, 230
CciI	TCATGA	1 cut(s)	3357
CfoI	GCGC	1 cut(s)	3509
Cfr13I	GGNCC	9 cut(s)	159, 773, 836, 1124, 1343, 1560, 1706, 2257, 2426
ClaI	ATCGAT	1 cut(s)	2658
CseI	GACGC	1 cut(s)	2557
Csp6I	GTAC	5 cut(s)	518, 1008, 2764, 2983, 3056
CviAII	CATG	9 cut(s)	1441, 1690, 2523, 2708, 3101, 3277, 3358, 3484, 3576
CviQI	GTAC	5 cut(s)	518, 1008, 2764, 2983, 3056
DraI	TTTAAA	1 cut(s)	1968
Eam1104I	CTCTTC	3 cut(s)	33, 985, 2770
EarI	CTCTTC	3 cut(s)	33, 985, 2770
Ecl136II	GAGCTC	2 cut(s)	3231, 3289
Eco130I	CCWWGG	3 cut(s)	769, 1972, 3483
Eco147I	AGGCCT	2 cut(s)	74, 1221
Eco24I	GRGCYC	2 cut(s)	3233, 3291
Eco31I	GGTCTC	2 cut(s)	1150, 2540
Eco47I	GGWCC	5 cut(s)	159, 836, 1560, 2257, 2426
Eco53kI	GAGCTC	2 cut(s)	3231, 3289
Eco57I	CTGAAG	6 cut(s)	120, 431, 867, 929, 1177, 3438
Eco88I	CYCGRG	2 cut(s)	2102, 2278
Eco91I	GGTNACC	1 cut(s)	2602
EcoICRI	GAGCTC	2 cut(s)	3231, 3289
EcoO65I	GGTNACC	1 cut(s)	2602
EcoRI	GAATTC	2 cut(s)	629, 1985
EcoRII	CCWGG	7 cut(s)	85, 669, 2155, 2647, 2966, 3373, 3569
EcoT14I	CCWWGG	3 cut(s)	769, 1972, 3483
EcoT22I	ATGCAT	1 cut(s)	1795
EcoT38I	GRGCYC	2 cut(s)	3233, 3291
ErhI	CCWWGG	3 cut(s)	769, 1972, 3483
Esp3I	CGTCTC	1 cut(s)	3453
FaeI	CATG	9 cut(s)	1444, 1693, 2526, 2711, 3104, 3280, 3361, 3487, 3579
FalI	AAGNNNNNCTT	4 cut(s)	110, 142, 2963, 2995
FaqI	GGGAC	2 cut(s)	1573, 2526
FatI	CATG	9 cut(s)	1440, 1689, 2522, 2707, 3100, 3276, 3357, 3483, 3575
FauI	CCCGC	1 cut(s)	3253
FblI	GTMKAC	3 cut(s)	2151, 2796, 3327
Fnu4HI	GCNGC	7 cut(s)	941, 1175, 1250, 1414, 1643, 2266, 2597
FokI	GGATG	4 cut(s)	904, 1791, 2649, 3357
FriOI	GRGCYC	2 cut(s)	3233, 3291
Fsp4HI	GCNGC	7 cut(s)	941, 1175, 1250, 1414, 1643, 2266, 2597
FspBI	CTAG	9 cut(s)	374, 1326, 1523, 1973, 2084, 2862, 3176, 3431, 3640
GlaI	GCGC	1 cut(s)	3508
GluI	GCNGC	7 cut(s)	941, 1175, 1250, 1414, 1643, 2266, 2597
GsaI	CCCAGC	1 cut(s)	3067
GsuI	CTGGAG	4 cut(s)	1653, 2339, 2670, 3267
HaeIII	GGCC	8 cut(s)	74, 775, 930, 1126, 1221, 1345, 1708, 3497
HapII	CCGG	4 cut(s)	1753, 1776, 2352, 3521
HgaI	GACGC	1 cut(s)	2557
HhaI	GCGC	1 cut(s)	3509
Hin1I	GRCGYC	1 cut(s)	2568
Hin1II	CATG	9 cut(s)	1444, 1693, 2526, 2711, 3104, 3280, 3361, 3487, 3579
Hin6I	GCGC	1 cut(s)	3507
HinP1I	GCGC	1 cut(s)	3507
HincII	GTYRAC	7 cut(s)	438, 1227, 1853, 1950, 2152, 2175, 3567
HindII	GTYRAC	7 cut(s)	438, 1227, 1853, 1950, 2152, 2175, 3567
HindIII	AAGCTT	5 cut(s)	734, 2023, 2179, 2306, 2459
HpaI	GTTAAC	3 cut(s)	438, 1227, 2175
HpaII	CCGG	4 cut(s)	1753, 1776, 2352, 3521
HphI	GGTGA	9 cut(s)	75, 745, 1765, 2513, 2614, 3088, 3125, 3137, 3499
HpyCH4III	ACNGT	5 cut(s)	226, 323, 329, 617, 3149
HpyCH4IV	ACGT	2 cut(s)	1386, 2162
HpyF10VI	GCNNNNNNNGC	5 cut(s)	366, 946, 1132, 1342, 2314
HpySE526I	ACGT	2 cut(s)	1386, 2162
Hsp92I	GRCGYC	1 cut(s)	2568
Hsp92II	CATG	9 cut(s)	1444, 1693, 2526, 2711, 3104, 3280, 3361, 3487, 3579
HspAI	GCGC	1 cut(s)	3507
Kpn2I	TCCGGA	1 cut(s)	3520
KspAI	GTTAAC	3 cut(s)	438, 1227, 2175
LmnI	GCTCC	5 cut(s)	89, 442, 1182, 3286, 3379
Lsp1109I	GCAGC	5 cut(s)	952, 1186, 1236, 2277, 2583
LweI	GCATC	4 cut(s)	70, 264, 1826, 3379
MaeI	CTAG	9 cut(s)	374, 1326, 1523, 1973, 2084, 2862, 3176, 3431, 3640
MaeII	ACGT	2 cut(s)	1386, 2162
MaeIII	GTNAC	7 cut(s)	323, 539, 2602, 2864, 3149, 3307, 3487
MboII	GAAGA	9 cut(s)	20, 130, 342, 860, 972, 1370, 1387, 2715, 2787
MfeI	CAATTG	3 cut(s)	1150, 1746, 1955
MhlI	GDGCHC	4 cut(s)	1689, 3071, 3233, 3291
MlyI	GAGTC	2 cut(s)	1327, 2832
MmeI	TCCRAC	6 cut(s)	489, 1077, 2235, 2459, 2571, 2790
Mph1103I	ATGCAT	1 cut(s)	1795
MroI	TCCGGA	1 cut(s)	3520
MroXI	GAANNNNTTC	3 cut(s)	1625, 1697, 1732
MslI	CAYNNNNRTG	4 cut(s)	1892, 2937, 3074, 3316
MspA1I	CMGCKG	1 cut(s)	499
MspCI	CTTAAG	2 cut(s)	935, 2624
MspI	CCGG	4 cut(s)	1753, 1776, 2352, 3521
MspR9I	CCNGG	8 cut(s)	87, 671, 2157, 2353, 2649, 2968, 3375, 3571
MunI	CAATTG	3 cut(s)	1150, 1746, 1955
Mva1269I	GAATGC	3 cut(s)	486, 1880, 3293
MvaI	CCWGG	7 cut(s)	87, 671, 2157, 2649, 2968, 3375, 3571
MwoI	GCNNNNNNNGC	5 cut(s)	366, 946, 1132, 1342, 2314
NciI	CCSGG	1 cut(s)	2353
NcoI	CCATGG	1 cut(s)	3483
NlaIII	CATG	9 cut(s)	1444, 1693, 2526, 2711, 3104, 3280, 3361, 3487, 3579
NlaIV	GGNNCC	3 cut(s)	1367, 1561, 3282
NmuCI	GTSAC	5 cut(s)	2602, 2864, 3149, 3307, 3487
NsiI	ATGCAT	1 cut(s)	1795
OliI	CACNNNNGTG	1 cut(s)	3074
PaeR7I	CTCGAG	1 cut(s)	2102
PagI	TCATGA	1 cut(s)	3357
PaqCI	CACCTGC	1 cut(s)	2250
PceI	AGGCCT	2 cut(s)	74, 1221
PctI	GAATGC	3 cut(s)	486, 1880, 3293
PdmI	GAANNNNTTC	3 cut(s)	1625, 1697, 1732
PfeI	GAWTC	9 cut(s)	623, 1348, 2017, 2323, 2687, 2858, 2884, 3236, 3524
PflMI	CCANNNNNTGG	3 cut(s)	1433, 2441, 3576
PfoI	TCCNGGA	3 cut(s)	669, 2351, 2966
PkrI	GCNGC	7 cut(s)	942, 1176, 1251, 1415, 1644, 2267, 2598
PleI	GAGTC	2 cut(s)	1326, 2831
PpsI	GAGTC	2 cut(s)	1326, 2831
Ppu21I	YACGTR	1 cut(s)	1387
PshAI	GACNNNNGTC	1 cut(s)	3445
PsiI	TTATAA	1 cut(s)	2312
Psp124BI	GAGCTC	2 cut(s)	3233, 3291
Psp1406I	AACGTT	1 cut(s)	2162
Psp6I	CCWGG	7 cut(s)	85, 669, 2155, 2647, 2966, 3373, 3569
PspEI	GGTNACC	1 cut(s)	2602
PspFI	CCCAGC	1 cut(s)	3063
PspGI	CCWGG	7 cut(s)	85, 669, 2155, 2647, 2966, 3373, 3569
PspN4I	GGNNCC	3 cut(s)	1367, 1561, 3282
PspPI	GGNCC	9 cut(s)	159, 773, 836, 1124, 1343, 1560, 1706, 2257, 2426
PspXI	VCTCGAGB	1 cut(s)	2102
PstNI	CAGNNNCTG	2 cut(s)	98, 230
PvuII	CAGCTG	1 cut(s)	499
RsaI	GTAC	5 cut(s)	519, 1009, 2765, 2984, 3057
RsaNI	GTAC	5 cut(s)	518, 1008, 2764, 2983, 3056
RseI	CAYNNNNRTG	4 cut(s)	1892, 2937, 3074, 3316
SacI	GAGCTC	2 cut(s)	3233, 3291
SalI	GTCGAC	1 cut(s)	2150
SatI	GCNGC	7 cut(s)	941, 1175, 1250, 1414, 1643, 2266, 2597
Sau96I	GGNCC	9 cut(s)	159, 773, 836, 1124, 1343, 1560, 1706, 2257, 2426
SchI	GAGTC	2 cut(s)	1327, 2832
ScrFI	CCNGG	8 cut(s)	87, 671, 2157, 2353, 2649, 2968, 3375, 3571
SduI	GDGCHC	4 cut(s)	1689, 3071, 3233, 3291
SfaNI	GCATC	4 cut(s)	70, 264, 1826, 3379
SfcI	CTRYAG	2 cut(s)	924, 3255
Sfr274I	CTCGAG	1 cut(s)	2102
SinI	GGWCC	5 cut(s)	159, 836, 1560, 2257, 2426
SlaI	CTCGAG	1 cut(s)	2102
SmiMI	CAYNNNNRTG	4 cut(s)	1892, 2937, 3074, 3316
SmlI	CTYRAG	5 cut(s)	935, 1597, 1723, 2102, 2624
SmoI	CTYRAG	5 cut(s)	935, 1597, 1723, 2102, 2624
SseBI	AGGCCT	2 cut(s)	74, 1221
SsiI	CCGC	4 cut(s)	422, 1413, 1643, 3260
SspI	AATATT	2 cut(s)	524, 1204
SspMI	CTAG	9 cut(s)	374, 1326, 1523, 1973, 2084, 2862, 3176, 3431, 3640
SstI	GAGCTC	2 cut(s)	3233, 3291
StuI	AGGCCT	2 cut(s)	74, 1221
StyD4I	CCNGG	8 cut(s)	85, 669, 2155, 2351, 2647, 2966, 3373, 3569
StyI	CCWWGG	3 cut(s)	769, 1972, 3483
TaaI	ACNGT	5 cut(s)	226, 323, 329, 617, 3149
TaiI	ACGT	2 cut(s)	1389, 2165
TaqI	TCGA	4 cut(s)	297, 2103, 2151, 2658
TatI	WGTACW	2 cut(s)	2982, 3055
TauI	GCSGC	2 cut(s)	1416, 1645
TfiI	GAWTC	9 cut(s)	623, 1348, 2017, 2323, 2687, 2858, 2884, 3236, 3524
TscAI	CASTG	4 cut(s)	265, 1201, 1996, 2743
TseFI	GTSAC	5 cut(s)	2602, 2864, 3149, 3307, 3487
TseI	GCWGC	5 cut(s)	940, 1174, 1249, 2265, 2596
Tsp45I	GTSAC	5 cut(s)	2602, 2864, 3149, 3307, 3487
TspGWI	ACGGA	4 cut(s)	455, 1904, 1920, 3435
TspRI	CASTG	4 cut(s)	265, 1201, 1996, 2743
Van91I	CCANNNNNTGG	3 cut(s)	1433, 2441, 3576
Vha464I	CTTAAG	2 cut(s)	935, 2624
VneI	GTGCAC	1 cut(s)	1685
VpaK11BI	GGWCC	5 cut(s)	159, 836, 1560, 2257, 2426
XbaI	TCTAGA	1 cut(s)	1325
XcmI	CCANNNNNNNNNTGG	3 cut(s)	3490, 3544, 3619
XhoI	CTCGAG	1 cut(s)	2102
XmaJI	CCTAGG	1 cut(s)	1972
XmiI	GTMKAC	3 cut(s)	2151, 2796, 3327
XmnI	GAANNNNTTC	3 cut(s)	1625, 1697, 1732
XspI	CTAG	9 cut(s)	374, 1326, 1523, 1973, 2084, 2862, 3176, 3431, 3640
Zsp2I	ATGCAT	1 cut(s)	1795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.