pycom08g02940

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
2308625 .. 2309927
1303 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g02940.2

Sequence Viewer

Length: 1143 bp
ATGCCCTCTACGCCCCATCATCTAAAAAATATTACAGATCTCATTGCATCACACTCCCTCCCTTTTCAAATTATGCCCATGCCACCTCCACTCCTCCTCCTCCTCGCCCTACTTCTCTTCCTCTCCCCCGCCACCGCAACAATTACCGCCACCCAACAGTTTAGAGAAGCACCTCAGTTCTATAACTCCCAAGACTGCCCTTCCATCACCACGCTCCCCGACGTTGACGTGGACCCCGACGAATCAGACGACGGCCACATGATTTGCTCTCCTCAAGCAGTCCACGTGGCAATGACTCTCGACACCGCCTACATCCGCGGCTCCATGGCCGCGATCCTCTCCGTCCTCCAACACTCATCCTGCCCCCAAAACGCAGTCTTCCACTTCGTCGCCTCCGCCGCCGCCAACGCTTCCCTCCTCCGCCAAACAATCTCCACCTCATTTCCCTACCTGAAATTCCGAATCTACGGCTTCGACGACTCCCACGTCTCAGGCCTCATCTCCACCTCCATCCGCTCCGCCCTCGACTGCCCCCTCAACTACGCCCGATCCTACCTCGCCGACCTTCTCCCCCTCTGCGTCCGCCGCGTCGTCTACCTCGACTCCGATCTCATCCTCGTGGATGACATCGCCAAGCTTTCTGCCACTCCTCTAGGAGGCGTCGCCGTCCTCGCCGCCCCGGAGTACTGCAACGCCAACTTCACCTCCTACTTCACCTCCGCCTTCTGGTCGAACCCCTCCCTCTCCCTCACCTTCGCCGACCGCCACACCTGCTACTTCAACACCGGTGTCATGGTCATCGACCTCGACCGGTGGCGCGGCGGAGACTACACGGCGAAGATCGAGGAGTGGATGGAGCTCCAAAAGAGAATGCGTATCTATGAGCTCGGATCCCTCCCTCCGTTTCTTTTGGTGTTCGCAGGGAAAATCGCGCCAGTGGAGCACCAGTGGAACCAGCACGGGCTCGGCGGCGATAACTTCAGGGGGCTTTGTCGTGATCTGCATCCGGGCGCAGTGAGTCTTTTGCATTGGAGCGGAAAGGGGAAGCCGTGGGCCCGGCTGGAGGCCAATCGGCCCTGCCCGCTCGATGCTCTCTGGGCTCCTTACGATCTCTTGGAAACGCCTTTTGTGTTGGATTCTTGA

Protein Analysis

381

Amino Acids

42.04

Weight (kDa)

5.55

Isoelectric Point (pI)

42.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013972)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19300
fragaria_vesca FvH4_2g40370
malus_domestica MD08G1036800.v1.1
prunus_persica Prupe.1G384100_v2.0.a1
pyrus_communis pycom08g02940 pycom15g02880
rosa_chinensis RchiOBHm_Chr6g0300381
rosa_laevigata RLG00000011343
rosa_multiflora Rmu_co8373719.1_g000001 Rmu_sc0001670.1_g000014
rosa_roxburghii Rroxscaffold_7G00167850
rosa_rugosa Rorug06G0295500
rosa_samantha Rh6AG408200 Rh6BG415500 Rh6CG422900 Rh6DG408500
rosa_wichuraiana Rw6G035700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 779
AasI GACNNNNNNGTC 1 cut(s) 485
Acc36I ACCTGC 1 cut(s) 779
AccBSI CCGCTC 3 cut(s) 516, 1035, 1084
AccI GTMKAC 1 cut(s) 594
AccII CGCG 5 cut(s) 318, 332, 588, 819, 932
AclWI GGATC 4 cut(s) 328, 543, 885, 898
AcoI YGGCCR 2 cut(s) 253, 327
AcsI RAATTY 1 cut(s) 455
AcuI CTGAAG 1 cut(s) 964
AcvI CACGTG 1 cut(s) 286
AcyI GRCGYC 1 cut(s) 660
AfaI GTAC 1 cut(s) 686
AfiI CCNNNNNNNGG 3 cut(s) 656, 726, 1063
AgeI ACCGGT 2 cut(s) 785, 810
AgsI TTSAA 2 cut(s) 68, 781
AjiI CACGTC 2 cut(s) 229, 487
AluBI AGCT 3 cut(s) 637, 859, 886
AluI AGCT 3 cut(s) 637, 859, 886
Alw21I GWGCWC 3 cut(s) 861, 888, 945
Alw26I GTCTC 2 cut(s) 493, 819
AlwI GGATC 4 cut(s) 328, 543, 885, 898
AoxI GGCC 6 cut(s) 253, 327, 493, 1053, 1065, 1073
ApaI GGGCCC 1 cut(s) 1057
ApoI RAATTY 1 cut(s) 455
AsiGI ACCGGT 2 cut(s) 785, 810
AspLEI GCGC 3 cut(s) 819, 934, 1013
AspS9I GGNCC 4 cut(s) 232, 1053, 1054, 1074
AsuC2I CCSGG 3 cut(s) 680, 1008, 1057
AsuHPI GGTGA 4 cut(s) 199, 694, 706, 742
AvaII GGWCC 1 cut(s) 232
BaeGI GKGCMC 1 cut(s) 1057
BamHI GGATCC 1 cut(s) 890
BanII GRGCYC 5 cut(s) 861, 888, 966, 1057, 1102
BauI CACGAG 1 cut(s) 617
BbrPI CACGTG 1 cut(s) 286
BbsI GAAGAC 1 cut(s) 370
Bbv12I GWGCWC 3 cut(s) 861, 888, 945
BccI CCATC 4 cut(s) 24, 212, 518, 847
BceAI ACGGC 5 cut(s) 268, 484, 650, 849, 1033
BcnI CCSGG 3 cut(s) 680, 1008, 1057
BcoDI GTCTC 2 cut(s) 493, 819
BfaI CTAG 1 cut(s) 653
BfuAI ACCTGC 1 cut(s) 779
BglII AGATCT 1 cut(s) 37
BisI GCNGC 8 cut(s) 319, 330, 399, 402, 586, 675, 820, 970
BlsI GCNGC 8 cut(s) 320, 331, 400, 403, 587, 676, 821, 971
BmcAI AGTACT 1 cut(s) 686
Bme1390I CCNGG 3 cut(s) 680, 1008, 1057
Bme18I GGWCC 1 cut(s) 232
BmgBI CACGTC 2 cut(s) 229, 487
BmgT120I GGNCC 4 cut(s) 232, 1053, 1054, 1074
BmiI GGNNCC 6 cut(s) 234, 322, 892, 953, 1055, 1101
BmrFI CCNGG 3 cut(s) 680, 1008, 1057
BmsI GCATC 3 cut(s) 56, 1012, 1078
BpiI GAAGAC 1 cut(s) 370
BpmI CTGGAG 1 cut(s) 1082
BpuEI CTTGAG 1 cut(s) 258
BpuMI CCSGG 3 cut(s) 680, 1008, 1057
BsaAI YACGTR 1 cut(s) 286
BsaBI GATNNNNATC 1 cut(s) 1002
BsaHI GRCGYC 1 cut(s) 660
BsaJI CCNNGG 4 cut(s) 316, 324, 678, 1049
BsaWI WCCGGW 2 cut(s) 785, 810
Bsc4I CCNNNNNNNGG 3 cut(s) 656, 726, 1063
Bse118I RCCGGY 2 cut(s) 785, 810
Bse1I ACTGG 2 cut(s) 935, 946
Bse3DI GCAATG 2 cut(s) 42, 297
Bse8I GATNNNNATC 1 cut(s) 1002
BseDI CCNNGG 4 cut(s) 316, 324, 678, 1049
BseGI GGATG 7 cut(s) 312, 356, 510, 612, 628, 858, 1003
BseJI GATNNNNATC 1 cut(s) 1002
BseLI CCNNNNNNNGG 3 cut(s) 656, 726, 1063
BseMI GCAATG 2 cut(s) 42, 297
BseMII CTCAG 2 cut(s) 188, 504
BseNI ACTGG 2 cut(s) 935, 946
BseRI GAGGAG 8 cut(s) 83, 86, 89, 92, 261, 407, 639, 860
BseSI GKGCMC 1 cut(s) 1057
Bsh1236I CGCG 5 cut(s) 318, 332, 588, 819, 932
Bsh1285I CGRYCG 2 cut(s) 763, 811
BshFI GGCC 6 cut(s) 255, 329, 495, 1055, 1067, 1075
BshTI ACCGGT 2 cut(s) 785, 810
BsiEI CGRYCG 2 cut(s) 763, 811
BsiHKAI GWGCWC 3 cut(s) 861, 888, 945
BsiSI CCGG 5 cut(s) 680, 786, 811, 1007, 1057
BslI CCNNNNNNNGG 3 cut(s) 656, 726, 1063
BsmAI GTCTC 2 cut(s) 493, 819
BsmBI CGTCTC 1 cut(s) 493
BsmI GAATGC 1 cut(s) 876
BsnI GGCC 6 cut(s) 255, 329, 495, 1055, 1067, 1075
Bsp120I GGGCCC 1 cut(s) 1053
Bsp1286I GDGCHC 6 cut(s) 861, 888, 945, 966, 1057, 1102
Bsp143I GATC 8 cut(s) 37, 333, 548, 607, 840, 890, 997, 1108
Bsp19I CCATGG 1 cut(s) 324
BspANI GGCC 6 cut(s) 255, 329, 495, 1055, 1067, 1075
BspCNI CTCAG 2 cut(s) 187, 503
BspFNI CGCG 5 cut(s) 318, 332, 588, 819, 932
BspLI GGNNCC 6 cut(s) 234, 322, 892, 953, 1055, 1101
BspMI ACCTGC 1 cut(s) 779
BspPI GGATC 4 cut(s) 328, 543, 885, 898
BsrBI CCGCTC 3 cut(s) 516, 1035, 1084
BsrDI GCAATG 2 cut(s) 42, 297
BsrFI RCCGGY 2 cut(s) 785, 810
BsrI ACTGG 2 cut(s) 935, 946
BssAI RCCGGY 2 cut(s) 785, 810
BssECI CCNNGG 4 cut(s) 316, 324, 678, 1049
BssMI GATC 8 cut(s) 37, 333, 548, 607, 840, 890, 997, 1108
BssNI GRCGYC 1 cut(s) 660
BssSI CACGAG 1 cut(s) 617
BssT1I CCWWGG 1 cut(s) 324
Bst2BI CACGAG 1 cut(s) 617
Bst4CI ACNGT 1 cut(s) 159
Bst6I CTCTTC 1 cut(s) 122
BstACI GRCGYC 1 cut(s) 660
BstBAI YACGTR 1 cut(s) 286
BstC8I GCNNGC 1 cut(s) 1082
BstDEI CTNAG 2 cut(s) 174, 490
BstDSI CCRYGG 3 cut(s) 316, 324, 1049
BstENI CCTNNNNNAGG 1 cut(s) 654
BstF5I GGATG 7 cut(s) 312, 356, 510, 612, 628, 858, 1003
BstFNI CGCG 5 cut(s) 318, 332, 588, 819, 932
BstHHI GCGC 3 cut(s) 819, 934, 1013
BstKTI GATC 8 cut(s) 40, 336, 551, 610, 843, 893, 1000, 1111
BstMAI GTCTC 2 cut(s) 493, 819
BstMBI GATC 8 cut(s) 37, 333, 548, 607, 840, 890, 997, 1108
BstMCI CGRYCG 2 cut(s) 763, 811
BstMWI GCNNNNNNNGC 9 cut(s) 10, 398, 407, 585, 671, 771, 940, 1081, 1097
BstSCI CCNGG 3 cut(s) 678, 1006, 1055
BstSLI GKGCMC 1 cut(s) 1057
BstUI CGCG 5 cut(s) 318, 332, 588, 819, 932
BstV2I GAAGAC 1 cut(s) 370
BstX2I RGATCY 2 cut(s) 37, 890
BstYI RGATCY 2 cut(s) 37, 890
BsuRI GGCC 6 cut(s) 255, 329, 495, 1055, 1067, 1075
BtgI CCRYGG 3 cut(s) 316, 324, 1049
BtgZI GCGATG 1 cut(s) 613
BtrI CACGTC 2 cut(s) 229, 487
BtsCI GGATG 7 cut(s) 312, 356, 510, 612, 628, 858, 1003
BtsI GCAGTG 1 cut(s) 1020
BtsIMutI CAGTG 3 cut(s) 942, 953, 1020
BveI ACCTGC 1 cut(s) 779
Cac8I GCNNGC 1 cut(s) 1082
CfoI GCGC 3 cut(s) 819, 934, 1013
Cfr10I RCCGGY 2 cut(s) 785, 810
Cfr13I GGNCC 4 cut(s) 232, 1053, 1054, 1074
Cfr42I CCGCGG 1 cut(s) 319
CseI GACGC 3 cut(s) 568, 577, 649
Csp6I GTAC 1 cut(s) 685
CspAI ACCGGT 2 cut(s) 785, 810
CspCI CAANNNNNGTGG 2 cut(s) 245, 280
CviAII CATG 4 cut(s) 79, 259, 325, 793
CviQI GTAC 1 cut(s) 685
DdeI CTNAG 2 cut(s) 174, 490
DpnI GATC 8 cut(s) 39, 335, 550, 609, 842, 892, 999, 1110
DpnII GATC 8 cut(s) 37, 333, 548, 607, 840, 890, 997, 1108
DrdI GACNNNNNNGTC 1 cut(s) 485
DseDI GACNNNNNNGTC 1 cut(s) 485
EaeI YGGCCR 2 cut(s) 253, 327
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
EciI GGCGGA 6 cut(s) 385, 410, 508, 572, 709, 837
Ecl136II GAGCTC 2 cut(s) 859, 886
Eco130I CCWWGG 1 cut(s) 324
Eco147I AGGCCT 1 cut(s) 495
Eco24I GRGCYC 5 cut(s) 861, 888, 966, 1057, 1102
Eco47I GGWCC 1 cut(s) 232
Eco53kI GAGCTC 2 cut(s) 859, 886
Eco57I CTGAAG 1 cut(s) 964
Eco72I CACGTG 1 cut(s) 286
EcoICRI GAGCTC 2 cut(s) 859, 886
EcoNI CCTNNNNNAGG 1 cut(s) 654
EcoT14I CCWWGG 1 cut(s) 324
EcoT38I GRGCYC 5 cut(s) 861, 888, 966, 1057, 1102
ErhI CCWWGG 1 cut(s) 324
Esp3I CGTCTC 1 cut(s) 493
FaeI CATG 4 cut(s) 82, 262, 328, 796
FaiI YATR 7 cut(s) 74, 80, 183, 260, 326, 794, 882
FatI CATG 4 cut(s) 78, 258, 324, 792
FauI CCCGC 2 cut(s) 136, 1089
FblI GTMKAC 1 cut(s) 594
Fnu4HI GCNGC 8 cut(s) 319, 330, 399, 402, 586, 675, 820, 970
FokI GGATG 7 cut(s) 299, 343, 497, 599, 635, 865, 990
FriOI GRGCYC 5 cut(s) 861, 888, 966, 1057, 1102
Fsp4HI GCNGC 8 cut(s) 319, 330, 399, 402, 586, 675, 820, 970
FspBI CTAG 1 cut(s) 653
GlaI GCGC 3 cut(s) 818, 933, 1012
GluI GCNGC 8 cut(s) 319, 330, 399, 402, 586, 675, 820, 970
GsuI CTGGAG 1 cut(s) 1082
HaeIII GGCC 6 cut(s) 255, 329, 495, 1055, 1067, 1075
HapII CCGG 5 cut(s) 680, 786, 811, 1007, 1057
HgaI GACGC 3 cut(s) 568, 577, 649
HhaI GCGC 3 cut(s) 819, 934, 1013
Hin1I GRCGYC 1 cut(s) 660
Hin1II CATG 4 cut(s) 82, 262, 328, 796
Hin6I GCGC 3 cut(s) 817, 932, 1011
HinP1I GCGC 3 cut(s) 817, 932, 1011
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HindIII AAGCTT 1 cut(s) 635
HinfI GANTC 7 cut(s) 242, 295, 462, 479, 602, 1018, 1136
HpaII CCGG 5 cut(s) 680, 786, 811, 1007, 1057
HphI GGTGA 4 cut(s) 199, 694, 706, 742
Hpy166II GTNNAC 4 cut(s) 226, 232, 283, 595
Hpy188I TCNGA 4 cut(s) 247, 461, 607, 890
Hpy188III TCNNGA 3 cut(s) 299, 995, 1140
Hpy8I GTNNAC 4 cut(s) 226, 232, 283, 595
Hpy99I CGWCG 7 cut(s) 224, 242, 254, 392, 479, 593, 665
HpyAV CCTTC 4 cut(s) 210, 575, 733, 763
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4IV ACGT 4 cut(s) 222, 228, 285, 486
HpyCH4V TGCA 4 cut(s) 47, 690, 1003, 1027
HpyF10VI GCNNNNNNNGC 9 cut(s) 10, 398, 407, 585, 671, 771, 940, 1081, 1097
HpyF3I CTNAG 2 cut(s) 174, 490
HpySE526I ACGT 4 cut(s) 222, 228, 285, 486
Hsp92I GRCGYC 1 cut(s) 660
Hsp92II CATG 4 cut(s) 82, 262, 328, 796
HspAI GCGC 3 cut(s) 817, 932, 1011
KspI CCGCGG 1 cut(s) 319
Kzo9I GATC 8 cut(s) 37, 333, 548, 607, 840, 890, 997, 1108
LmnI GCTCC 8 cut(s) 219, 326, 521, 856, 864, 940, 1032, 1105
LweI GCATC 3 cut(s) 56, 1012, 1078
MaeI CTAG 1 cut(s) 653
MaeII ACGT 4 cut(s) 222, 228, 285, 486
MalI GATC 8 cut(s) 39, 335, 550, 609, 842, 892, 999, 1110
MbiI CCGCTC 3 cut(s) 516, 1035, 1084
MboI GATC 8 cut(s) 37, 333, 548, 607, 840, 890, 997, 1108
MboII GAAGA 3 cut(s) 109, 370, 850
MflI RGATCY 2 cut(s) 37, 890
MhlI GDGCHC 6 cut(s) 861, 888, 945, 966, 1057, 1102
MluCI AATT 3 cut(s) 69, 141, 455
MlyI GAGTC 4 cut(s) 289, 473, 596, 1027
MmeI TCCRAC 2 cut(s) 373, 1113
MslI CAYNNNNRTG 1 cut(s) 617
MspA1I CMGCKG 1 cut(s) 318
MspI CCGG 5 cut(s) 680, 786, 811, 1007, 1057
MspR9I CCNGG 3 cut(s) 680, 1008, 1057
Mva1269I GAATGC 1 cut(s) 876
MvnI CGCG 5 cut(s) 318, 332, 588, 819, 932
MwoI GCNNNNNNNGC 9 cut(s) 10, 398, 407, 585, 671, 771, 940, 1081, 1097
NciI CCSGG 3 cut(s) 680, 1008, 1057
NcoI CCATGG 1 cut(s) 324
NdeII GATC 8 cut(s) 37, 333, 548, 607, 840, 890, 997, 1108
NlaIII CATG 4 cut(s) 82, 262, 328, 796
NlaIV GGNNCC 6 cut(s) 234, 322, 892, 953, 1055, 1101
NmeAIII GCCGAG 1 cut(s) 945
PaqCI CACCTGC 1 cut(s) 779
PceI AGGCCT 1 cut(s) 495
PcsI WCGNNNNNNNCGW 5 cut(s) 234, 246, 474, 483, 597
PctI GAATGC 1 cut(s) 876
PfeI GAWTC 3 cut(s) 242, 462, 1136
PinAI ACCGGT 2 cut(s) 785, 810
PkrI GCNGC 8 cut(s) 320, 331, 400, 403, 587, 676, 821, 971
PleI GAGTC 4 cut(s) 289, 473, 596, 1026
PmaCI CACGTG 1 cut(s) 286
PmlI CACGTG 1 cut(s) 286
PpsI GAGTC 4 cut(s) 289, 473, 596, 1026
Ppu21I YACGTR 1 cut(s) 286
Psp124BI GAGCTC 2 cut(s) 861, 888
PspCI CACGTG 1 cut(s) 286
PspN4I GGNNCC 6 cut(s) 234, 322, 892, 953, 1055, 1101
PspOMI GGGCCC 1 cut(s) 1053
PspPI GGNCC 4 cut(s) 232, 1053, 1054, 1074
PsuI RGATCY 2 cut(s) 37, 890
RsaI GTAC 1 cut(s) 686
RsaNI GTAC 1 cut(s) 685
RseI CAYNNNNRTG 1 cut(s) 617
SacI GAGCTC 2 cut(s) 861, 888
SacII CCGCGG 1 cut(s) 319
SatI GCNGC 8 cut(s) 319, 330, 399, 402, 586, 675, 820, 970
Sau3AI GATC 8 cut(s) 37, 333, 548, 607, 840, 890, 997, 1108
Sau96I GGNCC 4 cut(s) 232, 1053, 1054, 1074
ScaI AGTACT 1 cut(s) 686
SchI GAGTC 4 cut(s) 289, 473, 596, 1027
ScrFI CCNGG 3 cut(s) 680, 1008, 1057
SduI GDGCHC 6 cut(s) 861, 888, 945, 966, 1057, 1102
SfaNI GCATC 3 cut(s) 56, 1012, 1078
Sfr303I CCGCGG 1 cut(s) 319
SgrAI CRCCGGYG 1 cut(s) 785
SgrBI CCGCGG 1 cut(s) 319
SinI GGWCC 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 617
SmlI CTYRAG 1 cut(s) 273
SmoI CTYRAG 1 cut(s) 273
Sse9I AATT 3 cut(s) 69, 141, 455
SseBI AGGCCT 1 cut(s) 495
SspI AATATT 1 cut(s) 31
SspMI CTAG 1 cut(s) 653
SstI GAGCTC 2 cut(s) 861, 888
StuI AGGCCT 1 cut(s) 495
StyD4I CCNGG 3 cut(s) 678, 1006, 1055
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 1 cut(s) 159
TaiI ACGT 4 cut(s) 225, 231, 288, 489
TaqI TCGA 9 cut(s) 300, 474, 525, 600, 731, 801, 807, 843, 1086
TasI AATT 3 cut(s) 69, 141, 455
TatI WGTACW 1 cut(s) 684
TauI GCSGC 8 cut(s) 321, 332, 401, 404, 588, 677, 822, 972
TfiI GAWTC 3 cut(s) 242, 462, 1136
TscAI CASTG 3 cut(s) 942, 953, 1020
TspGWI ACGGA 2 cut(s) 331, 891
TspRI CASTG 3 cut(s) 942, 953, 1020
VpaK11BI GGWCC 1 cut(s) 232
XagI CCTNNNNNAGG 1 cut(s) 654
XapI RAATTY 1 cut(s) 455
XmiI GTMKAC 1 cut(s) 594
XspI CTAG 1 cut(s) 653
ZrmI AGTACT 1 cut(s) 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.