RLG00000011343

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
8760632 .. 8761765
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011343

Sequence Viewer

Length: 1134 bp
ATGCCCACGCCTAATCCCAAGCTACCTCTCCTTTTCATTCTCTCCCTCATTCTCTTTCCCCTTCACTCTTGCTCTACTCCAACCAATGTAAATACCAACACCACCGCCGCCGCCGCGGCGCATCATTTTAGAGAAGCTCCGCAGTTCTACAACTCCCCCGACTGCCCTTCCATCACCACAGTCCACGACGACGACTTCGACCCCGATGAAGAAGACGACAACAACAATAACAACCACCACCACTTCATGATCTGTTCCCGCCAAGCCGTCCACGTGGCAATGACTTTGGACACCGCCTACATCCGCGGCTCCATGGCTGCCATCCTCTCCGTCCTCCAACACTCCTCCTGTCCCCAAAACGTCGCCTTCCACTTCGTCGCCTCTGCCGCAGCCAACGCGTCCCACCTACGCGCCACCATTGCTTCCTCCTTCCCTTACCTCACCTTCCAAATCTACCCCTTCGACGACTCCCACGTCTCGGGACTCATCTCCACCTCCATCCGCTCCGCCTTGGACTGCCCTCTCAACTACGCCCGTAGCTACCTCGCCAACCTCCTCCCCCTCTGCGTACGACGAGTCGTCTACCTCGACTCCGATCTCATTCTGGTCGACGACATTGCCAAGCTCGCGGACATTCCCCTCGGCGACGAGAGCACCGTCCTCGCCGCCCCGGAGTACTGCAACGCAAACTTCACTTCGTATTTCACCACTACATTCTGGTCCAATCCTTCTCTCTCGCTCACGTTCGCTGACCGGAAGGCCTGTTACTTCAACACCGGCGTGATGGTGATCGATCTGGACCGCTGGAGAGGGGGTGACTACACCGCGAAAATAGAAGAGTGGATGCAGCTGCAGAAGAGAATGAGAATCTACGAGCTCGGTTCGTTGCCGCCATTTCTTCTAGTTTTTGCCGGGAAAATAGCGCCTGTGGAGCACAGATGGAACCAACATGGTCTCGGTGGTGATAACTTCCGGGGGCTTTGCCGGAATTTGCATCCTGGTTCGGTGAGTCTTTTGCATTGGAGTGGAAAAGGGAAGCCGTGGGCGAGATTGGAAGCTAACAGGCCATGCCCTTTGGACGCGCTCTGGGCTCCTTATGATCTCTTGGAAACTCCATTTGTTTTGGACTCTTGA

Protein Analysis

378

Amino Acids

42.06

Weight (kDa)

5.75

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 91 - 350 3.4e-48 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013972)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19300
fragaria_vesca FvH4_2g40370
malus_domestica MD08G1036800.v1.1
prunus_persica Prupe.1G384100_v2.0.a1
pyrus_communis pycom08g02940 pycom15g02880
rosa_chinensis RchiOBHm_Chr6g0300381
rosa_laevigata RLG00000011343
rosa_multiflora Rmu_co8373719.1_g000001 Rmu_sc0001670.1_g000014
rosa_roxburghii Rroxscaffold_7G00167850
rosa_rugosa Rorug06G0295500
rosa_samantha Rh6AG408200 Rh6BG415500 Rh6CG422900 Rh6DG408500
rosa_wichuraiana Rw6G035700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 473
AccBSI CCGCTC 1 cut(s) 504
AccI GTMKAC 2 cut(s) 582, 609
AccII CGCG 7 cut(s) 116, 306, 398, 411, 629, 827, 1082
AcsI RAATTY 1 cut(s) 988
AcvI CACGTG 1 cut(s) 274
AfaI GTAC 2 cut(s) 570, 677
AfiI CCNNNNNNNGG 1 cut(s) 478
AflIII ACRYGT 1 cut(s) 396
AgsI TTSAA 1 cut(s) 772
AhdI GACNNNNNGTC 1 cut(s) 578
AjiI CACGTC 1 cut(s) 475
AjnI CCWGG 1 cut(s) 997
AleI CACNNNNGTG 1 cut(s) 779
AluBI AGCT 7 cut(s) 22, 137, 540, 625, 850, 877, 1058
AluI AGCT 7 cut(s) 22, 137, 540, 625, 850, 877, 1058
Alw21I GWGCWC 3 cut(s) 656, 879, 936
Alw26I GTCTC 2 cut(s) 481, 959
Ama87I CYCGRG 1 cut(s) 478
AoxI GGCC 2 cut(s) 759, 1064
ApeKI GCWGC 4 cut(s) 317, 389, 847, 850
ApoI RAATTY 1 cut(s) 988
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
AspLEI GCGC 4 cut(s) 121, 413, 925, 1084
AspS9I GGNCC 2 cut(s) 720, 799
AsuC2I CCSGG 3 cut(s) 671, 913, 974
AsuHPI GGTGA 7 cut(s) 166, 433, 697, 799, 827, 974, 1018
AvaI CYCGRG 1 cut(s) 478
AvaII GGWCC 2 cut(s) 720, 799
BanII GRGCYC 2 cut(s) 879, 1093
BarI GAAGNNNNNNTAC 2 cut(s) 749, 781
BbrPI CACGTG 1 cut(s) 274
BbsI GAAGAC 1 cut(s) 219
Bbv12I GWGCWC 3 cut(s) 656, 879, 936
BbvI GCAGC 4 cut(s) 304, 401, 837, 859
BccI CCATC 5 cut(s) 179, 329, 506, 778, 933
BceAI ACGGC 2 cut(s) 251, 1024
BcgI CGANNNNNNTGC 4 cut(s) 599, 633, 643, 677
BciT130I CCWGG 1 cut(s) 999
BcnI CCSGG 3 cut(s) 671, 913, 974
BcoDI GTCTC 2 cut(s) 481, 959
BfaI CTAG 1 cut(s) 902
BfmI CTRYAG 1 cut(s) 851
BfoI RGCGCY 1 cut(s) 926
BglI GCCNNNNNGGC 1 cut(s) 116
BmcAI AGTACT 1 cut(s) 677
Bme1390I CCNGG 4 cut(s) 671, 913, 974, 999
Bme18I GGWCC 2 cut(s) 720, 799
BmeRI GACNNNNNGTC 1 cut(s) 578
BmeT110I CYCGRG 1 cut(s) 478
BmgBI CACGTC 1 cut(s) 475
BmgT120I GGNCC 2 cut(s) 720, 799
BmiI GGNNCC 3 cut(s) 310, 944, 1092
BmrFI CCNGG 4 cut(s) 671, 913, 974, 999
BmsI GCATC 3 cut(s) 130, 834, 1003
BpiI GAAGAC 1 cut(s) 219
BpmI CTGGAG 1 cut(s) 826
BpuMI CCSGG 3 cut(s) 671, 913, 974
Bsa29I ATCGAT 1 cut(s) 792
BsaAI YACGTR 1 cut(s) 274
BsaBI GATNNNNATC 1 cut(s) 788
BsaI GGTCTC 1 cut(s) 959
BsaJI CCNNGG 8 cut(s) 114, 304, 312, 510, 640, 669, 973, 1040
BsaWI WCCGGW 1 cut(s) 753
BsaXI ACNNNNNCTCC 4 cut(s) 575, 605, 799, 829
Bsc4I CCNNNNNNNGG 1 cut(s) 478
Bse118I RCCGGY 1 cut(s) 776
Bse3DI GCAATG 3 cut(s) 285, 417, 615
Bse8I GATNNNNATC 1 cut(s) 788
BseBI CCWGG 1 cut(s) 999
BseCI ATCGAT 1 cut(s) 792
BseDI CCNNGG 8 cut(s) 114, 304, 312, 510, 640, 669, 973, 1040
BseGI GGATG 5 cut(s) 300, 321, 498, 849, 994
BseJI GATNNNNATC 1 cut(s) 788
BseLI CCNNNNNNNGG 1 cut(s) 478
BseMI GCAATG 3 cut(s) 285, 417, 615
BseRI GAGGAG 2 cut(s) 334, 545
BseXI GCAGC 4 cut(s) 304, 401, 837, 859
Bsh1236I CGCG 7 cut(s) 116, 306, 398, 411, 629, 827, 1082
BshFI GGCC 2 cut(s) 761, 1066
BshVI ATCGAT 1 cut(s) 792
BsiHKAI GWGCWC 3 cut(s) 656, 879, 936
BsiHKCI CYCGRG 1 cut(s) 478
BsiSI CCGG 6 cut(s) 671, 754, 777, 912, 973, 985
BsiWI CGTACG 1 cut(s) 568
BslFI GGGAC 3 cut(s) 336, 385, 495
BslI CCNNNNNNNGG 1 cut(s) 478
BsmAI GTCTC 2 cut(s) 481, 959
BsmBI CGTCTC 1 cut(s) 481
BsmFI GGGAC 3 cut(s) 336, 385, 495
BsnI GGCC 2 cut(s) 761, 1066
Bso31I GGTCTC 1 cut(s) 959
BsoBI CYCGRG 1 cut(s) 478
Bsp1286I GDGCHC 4 cut(s) 656, 879, 936, 1093
Bsp143I GATC 5 cut(s) 249, 595, 789, 793, 1099
Bsp19I CCATGG 1 cut(s) 312
BspANI GGCC 2 cut(s) 761, 1066
BspDI ATCGAT 1 cut(s) 792
BspFNI CGCG 7 cut(s) 116, 306, 398, 411, 629, 827, 1082
BspHI TCATGA 1 cut(s) 246
BspLI GGNNCC 3 cut(s) 310, 944, 1092
BspMAI CTGCAG 1 cut(s) 855
BspTNI GGTCTC 1 cut(s) 959
BsrBI CCGCTC 1 cut(s) 504
BsrDI GCAATG 3 cut(s) 285, 417, 615
BsrFI RCCGGY 1 cut(s) 776
BssAI RCCGGY 1 cut(s) 776
BssECI CCNNGG 8 cut(s) 114, 304, 312, 510, 640, 669, 973, 1040
BssMI GATC 5 cut(s) 249, 595, 789, 793, 1099
BssT1I CCWWGG 2 cut(s) 312, 510
Bst2UI CCWGG 1 cut(s) 999
Bst4CI ACNGT 2 cut(s) 181, 658
Bst6I CTCTTC 2 cut(s) 831, 851
BstBAI YACGTR 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 627
BstDSI CCRYGG 4 cut(s) 114, 304, 312, 1040
BstF5I GGATG 5 cut(s) 300, 321, 498, 849, 994
BstFNI CGCG 7 cut(s) 116, 306, 398, 411, 629, 827, 1082
BstH2I RGCGCY 1 cut(s) 926
BstHHI GCGC 4 cut(s) 121, 413, 925, 1084
BstKTI GATC 5 cut(s) 252, 598, 792, 796, 1102
BstMAI GTCTC 2 cut(s) 481, 959
BstMBI GATC 5 cut(s) 249, 595, 789, 793, 1099
BstMWI GCNNNNNNNGC 9 cut(s) 113, 116, 386, 395, 419, 626, 651, 931, 1088
BstNI CCWGG 1 cut(s) 999
BstSCI CCNGG 4 cut(s) 669, 911, 972, 997
BstSFI CTRYAG 1 cut(s) 851
BstUI CGCG 7 cut(s) 116, 306, 398, 411, 629, 827, 1082
BstV1I GCAGC 4 cut(s) 304, 401, 837, 859
BstV2I GAAGAC 1 cut(s) 219
Bsu15I ATCGAT 1 cut(s) 792
BsuRI GGCC 2 cut(s) 761, 1066
BsuTUI ATCGAT 1 cut(s) 792
BtgI CCRYGG 4 cut(s) 114, 304, 312, 1040
BtrI CACGTC 1 cut(s) 475
BtsCI GGATG 5 cut(s) 300, 321, 498, 849, 994
Cac8I GCNNGC 1 cut(s) 627
CciI TCATGA 1 cut(s) 246
CfoI GCGC 4 cut(s) 121, 413, 925, 1084
Cfr10I RCCGGY 1 cut(s) 776
Cfr13I GGNCC 2 cut(s) 720, 799
Cfr42I CCGCGG 2 cut(s) 117, 307
ClaI ATCGAT 1 cut(s) 792
CseI GACGC 2 cut(s) 387, 1088
Csp6I GTAC 2 cut(s) 569, 676
CviAII CATG 4 cut(s) 247, 313, 950, 1068
CviQI GTAC 2 cut(s) 569, 676
DpnI GATC 5 cut(s) 251, 597, 791, 795, 1101
DpnII GATC 5 cut(s) 249, 595, 789, 793, 1099
DrdI GACNNNNNNGTC 1 cut(s) 473
DriI GACNNNNNGTC 1 cut(s) 578
DseDI GACNNNNNNGTC 1 cut(s) 473
Eam1104I CTCTTC 2 cut(s) 831, 851
Eam1105I GACNNNNNGTC 1 cut(s) 578
EarI CTCTTC 2 cut(s) 831, 851
EciI GGCGGA 1 cut(s) 496
Ecl136II GAGCTC 1 cut(s) 877
Eco130I CCWWGG 2 cut(s) 312, 510
Eco147I AGGCCT 1 cut(s) 761
Eco24I GRGCYC 2 cut(s) 879, 1093
Eco31I GGTCTC 1 cut(s) 959
Eco47I GGWCC 2 cut(s) 720, 799
Eco53kI GAGCTC 1 cut(s) 877
Eco72I CACGTG 1 cut(s) 274
Eco88I CYCGRG 1 cut(s) 478
EcoICRI GAGCTC 1 cut(s) 877
EcoRII CCWGG 1 cut(s) 997
EcoT14I CCWWGG 2 cut(s) 312, 510
EcoT38I GRGCYC 2 cut(s) 879, 1093
ErhI CCWWGG 2 cut(s) 312, 510
Esp3I CGTCTC 1 cut(s) 481
FaeI CATG 4 cut(s) 250, 316, 953, 1071
FaiI YATR 5 cut(s) 248, 314, 951, 1069, 1098
FaqI GGGAC 3 cut(s) 336, 385, 495
FatI CATG 4 cut(s) 246, 312, 949, 1067
FauI CCCGC 1 cut(s) 266
FblI GTMKAC 2 cut(s) 582, 609
FokI GGATG 5 cut(s) 287, 308, 485, 856, 981
FriOI GRGCYC 2 cut(s) 879, 1093
FspBI CTAG 1 cut(s) 902
GlaI GCGC 4 cut(s) 120, 412, 924, 1083
GsuI CTGGAG 1 cut(s) 826
HaeII RGCGCY 1 cut(s) 926
HaeIII GGCC 2 cut(s) 761, 1066
HapII CCGG 6 cut(s) 671, 754, 777, 912, 973, 985
HgaI GACGC 2 cut(s) 387, 1088
HhaI GCGC 4 cut(s) 121, 413, 925, 1084
Hin1II CATG 4 cut(s) 250, 316, 953, 1071
Hin6I GCGC 4 cut(s) 119, 411, 923, 1082
HinP1I GCGC 4 cut(s) 119, 411, 923, 1082
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HinfI GANTC 7 cut(s) 467, 483, 576, 590, 867, 1009, 1127
HpaII CCGG 6 cut(s) 671, 754, 777, 912, 973, 985
HphI GGTGA 7 cut(s) 166, 433, 697, 799, 827, 974, 1018
Hpy166II GTNNAC 4 cut(s) 184, 271, 583, 610
Hpy188I TCNGA 1 cut(s) 595
Hpy188III TCNNGA 4 cut(s) 247, 480, 797, 1131
Hpy8I GTNNAC 4 cut(s) 184, 271, 583, 610
Hpy99I CGWCG 8 cut(s) 191, 194, 365, 380, 467, 576, 614, 650
HpyAV CCTTC 8 cut(s) 71, 177, 376, 439, 454, 469, 738, 751
HpyCH4III ACNGT 2 cut(s) 181, 658
HpyCH4IV ACGT 4 cut(s) 273, 360, 474, 743
HpyCH4V TGCA 5 cut(s) 681, 847, 853, 994, 1018
HpyF10VI GCNNNNNNNGC 9 cut(s) 113, 116, 386, 395, 419, 626, 651, 931, 1088
HpySE526I ACGT 4 cut(s) 273, 360, 474, 743
Hsp92II CATG 4 cut(s) 250, 316, 953, 1071
HspAI GCGC 4 cut(s) 119, 411, 923, 1082
KspI CCGCGG 2 cut(s) 117, 307
Kzo9I GATC 5 cut(s) 249, 595, 789, 793, 1099
LmnI GCTCC 5 cut(s) 142, 314, 509, 931, 1096
Lsp1109I GCAGC 4 cut(s) 304, 401, 837, 859
LweI GCATC 3 cut(s) 130, 834, 1003
MaeI CTAG 1 cut(s) 902
MaeII ACGT 4 cut(s) 273, 360, 474, 743
MaeIII GTNAC 2 cut(s) 764, 815
MalI GATC 5 cut(s) 251, 597, 791, 795, 1101
MbiI CCGCTC 1 cut(s) 504
MboI GATC 5 cut(s) 249, 595, 789, 793, 1099
MboII GAAGA 5 cut(s) 221, 224, 848, 868, 890
MhlI GDGCHC 4 cut(s) 656, 879, 936, 1093
MluCI AATT 1 cut(s) 988
MluI ACGCGT 1 cut(s) 396
MlyI GAGTC 6 cut(s) 461, 477, 584, 585, 1018, 1121
MmeI TCCRAC 2 cut(s) 104, 361
MslI CAYNNNNRTG 2 cut(s) 779, 1023
MspA1I CMGCKG 4 cut(s) 116, 306, 804, 850
MspI CCGG 6 cut(s) 671, 754, 777, 912, 973, 985
MspR9I CCNGG 4 cut(s) 671, 913, 974, 999
MvaI CCWGG 1 cut(s) 999
MvnI CGCG 7 cut(s) 116, 306, 398, 411, 629, 827, 1082
MwoI GCNNNNNNNGC 9 cut(s) 113, 116, 386, 395, 419, 626, 651, 931, 1088
NciI CCSGG 3 cut(s) 671, 913, 974
NcoI CCATGG 1 cut(s) 312
NdeII GATC 5 cut(s) 249, 595, 789, 793, 1099
NlaIII CATG 4 cut(s) 250, 316, 953, 1071
NlaIV GGNNCC 3 cut(s) 310, 944, 1092
NmeAIII GCCGAG 1 cut(s) 621
NmuCI GTSAC 1 cut(s) 815
OliI CACNNNNGTG 1 cut(s) 779
PagI TCATGA 1 cut(s) 246
PceI AGGCCT 1 cut(s) 761
PcsI WCGNNNNNNNCGW 4 cut(s) 195, 471, 585, 654
PfeI GAWTC 1 cut(s) 867
Pfl23II CGTACG 1 cut(s) 568
PleI GAGTC 6 cut(s) 461, 477, 584, 584, 1017, 1121
PmaCI CACGTG 1 cut(s) 274
PmlI CACGTG 1 cut(s) 274
PpsI GAGTC 6 cut(s) 461, 477, 584, 584, 1017, 1121
Ppu21I YACGTR 1 cut(s) 274
Psp124BI GAGCTC 1 cut(s) 879
Psp6I CCWGG 1 cut(s) 997
PspCI CACGTG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 997
PspLI CGTACG 1 cut(s) 568
PspN4I GGNNCC 3 cut(s) 310, 944, 1092
PspPI GGNCC 2 cut(s) 720, 799
PstI CTGCAG 1 cut(s) 855
PvuII CAGCTG 1 cut(s) 850
RsaI GTAC 2 cut(s) 570, 677
RsaNI GTAC 2 cut(s) 569, 676
RseI CAYNNNNRTG 2 cut(s) 779, 1023
SacI GAGCTC 1 cut(s) 879
SacII CCGCGG 2 cut(s) 117, 307
SalI GTCGAC 1 cut(s) 608
Sau3AI GATC 5 cut(s) 249, 595, 789, 793, 1099
Sau96I GGNCC 2 cut(s) 720, 799
ScaI AGTACT 1 cut(s) 677
SchI GAGTC 6 cut(s) 461, 477, 584, 585, 1018, 1121
ScrFI CCNGG 4 cut(s) 671, 913, 974, 999
SduI GDGCHC 4 cut(s) 656, 879, 936, 1093
SfaNI GCATC 3 cut(s) 130, 834, 1003
SfcI CTRYAG 1 cut(s) 851
Sfr303I CCGCGG 2 cut(s) 117, 307
SgrAI CRCCGGYG 1 cut(s) 776
SgrBI CCGCGG 2 cut(s) 117, 307
SinI GGWCC 2 cut(s) 720, 799
SmiMI CAYNNNNRTG 2 cut(s) 779, 1023
Sse9I AATT 1 cut(s) 988
SseBI AGGCCT 1 cut(s) 761
SspMI CTAG 1 cut(s) 902
SstI GAGCTC 1 cut(s) 879
StuI AGGCCT 1 cut(s) 761
StyD4I CCNGG 4 cut(s) 669, 911, 972, 997
StyI CCWWGG 2 cut(s) 312, 510
TaaI ACNGT 2 cut(s) 181, 658
TaiI ACGT 4 cut(s) 276, 363, 477, 746
TaqI TCGA 5 cut(s) 198, 462, 588, 609, 792
TasI AATT 1 cut(s) 988
TatI WGTACW 1 cut(s) 675
TauI GCSGC 8 cut(s) 110, 113, 116, 119, 309, 389, 668, 892
TfiI GAWTC 1 cut(s) 867
TseFI GTSAC 1 cut(s) 815
TseI GCWGC 4 cut(s) 317, 389, 847, 850
Tsp45I GTSAC 1 cut(s) 815
TspDTI ATGAA 3 cut(s) 25, 222, 235
TspGWI ACGGA 1 cut(s) 319
VpaK11BI GGWCC 2 cut(s) 720, 799
XapI RAATTY 1 cut(s) 988
XmiI GTMKAC 2 cut(s) 582, 609
XspI CTAG 1 cut(s) 902
ZrmI AGTACT 1 cut(s) 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.