Rh6CG422900

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
60568115 .. 60570972
2858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG422900.1

Sequence Viewer

Length: 1128 bp
ATGCCCACGCCTAATCCCAAGCTACCTCTCCTTTTCATTCTCTCTCTCATTCTCTTTCCCATTCACTCTTGCTCTACTCCAACCAATGTAAATACCAACACCACCGCCGCCGCGCATCATTTTAGAGAAGCTCCGCAGTTCTACAACTCCCCCGACTGCCCTTCCATCACCACCGTCCACGACGACGACTTCGACCCCGATGAAGAAGACGACAACAACAATAACAACCACCACCACTTCATGATCTGTTCCCGCCAAGCCGTCCACGTGGCAATGACTTTGGACACCGCCTACATCCGCGGCTCCATGGCTGCCATCCTCTCCGTCCTCCAACACTCCTCCTGTCCCCAAAACGTCGCCTTCCACTTCGTCGCCTCTGCCGCAGCCAACGCGTCCCACCTACGCGCCACTATTGCTTCCTCCTTCCCTTACCTCACCTTCCAAATCTACCCCTTCGACGACTCCCACGTCTCGGGACTCATCTCCACCTCCATCCGCTCCGCCTTGGACTGCCCTCTCAACTACGCCCGTAGCTACCTCGCCAACCTCCTCCCCCTCTGCGTACGACGAGTCGTCTACCTCGACTCCGATCTCATTCTGGTCGACGACATTGCCAAGCTCGCGGACATTCCCCTCGGCGACGAGAGCACCGTCCTCGCCGCCCCGGAGTACTGTAACGCAAACTTCACTTCGTATTTCACCACTACATTCTGGTCCAATCCTTCTCTCTCGCTCACGTTCGCTGACCGGAAGGCCTGTTACTTCAACACCGGCGTGATGGTGATCGATCTGGACCGCTGGAGAGGGGGTGACTACACCGCGAAAATAGAAGAGTGGATGCAGCTGCAGAAGAGAATGAGAATCTACGAGCTCGGTTCGTTGCCGCCATTTCTTCTAGTTTTTGCCGGGAAAATAGCCCCTGTGGAGCACAGATGGAACCAACATGGTCTCGGTGGTGATAACTTCCGGGGGCTTTGCCGGAATTTGCATCCTGGTTCGGTGAGTCTTTTGCATTGGAGTGGAAAAGGGAAGCCGTGGGCGAGATTGGAAGCTAACAGGCCATGCCCTTTGGACGCGCTCTGGGCTCCTTATGATCTCTTGGAAACTCCATTTGTTTTGGACTCTTGA

Protein Analysis

375

Amino Acids

41.92

Weight (kDa)

5.75

Isoelectric Point (pI)

41.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 89 - 348 3.3e-48 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013972)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19300
fragaria_vesca FvH4_2g40370
malus_domestica MD08G1036800.v1.1
prunus_persica Prupe.1G384100_v2.0.a1
pyrus_communis pycom08g02940 pycom15g02880
rosa_chinensis RchiOBHm_Chr6g0300381
rosa_laevigata RLG00000011343
rosa_multiflora Rmu_co8373719.1_g000001 Rmu_sc0001670.1_g000014
rosa_roxburghii Rroxscaffold_7G00167850
rosa_rugosa Rorug06G0295500
rosa_samantha Rh6AG408200 Rh6BG415500 Rh6CG422900 Rh6DG408500
rosa_wichuraiana Rw6G035700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 467
AccBSI CCGCTC 1 cut(s) 498
AccI GTMKAC 2 cut(s) 576, 603
AccII CGCG 7 cut(s) 113, 300, 392, 405, 623, 821, 1076
AcsI RAATTY 1 cut(s) 982
AcvI CACGTG 1 cut(s) 268
AfaI GTAC 2 cut(s) 564, 671
AfiI CCNNNNNNNGG 1 cut(s) 472
AflIII ACRYGT 1 cut(s) 390
AgsI TTSAA 1 cut(s) 766
AhdI GACNNNNNGTC 1 cut(s) 572
AjiI CACGTC 1 cut(s) 469
AjnI CCWGG 1 cut(s) 991
AleI CACNNNNGTG 1 cut(s) 773
AluBI AGCT 7 cut(s) 22, 131, 534, 619, 844, 871, 1052
AluI AGCT 7 cut(s) 22, 131, 534, 619, 844, 871, 1052
Alw21I GWGCWC 3 cut(s) 650, 873, 930
Alw26I GTCTC 2 cut(s) 475, 953
Ama87I CYCGRG 1 cut(s) 472
AoxI GGCC 2 cut(s) 753, 1058
ApeKI GCWGC 4 cut(s) 311, 383, 841, 844
ApoI RAATTY 1 cut(s) 982
ArsI GACNNNNNNTTYG 2 cut(s) 173, 205
AspLEI GCGC 3 cut(s) 115, 407, 1078
AspS9I GGNCC 2 cut(s) 714, 793
AsuC2I CCSGG 3 cut(s) 665, 907, 968
AsuHPI GGTGA 7 cut(s) 160, 427, 691, 793, 821, 968, 1012
AvaI CYCGRG 1 cut(s) 472
AvaII GGWCC 2 cut(s) 714, 793
BanII GRGCYC 2 cut(s) 873, 1087
BarI GAAGNNNNNNTAC 2 cut(s) 743, 775
BbrPI CACGTG 1 cut(s) 268
BbsI GAAGAC 1 cut(s) 213
Bbv12I GWGCWC 3 cut(s) 650, 873, 930
BbvI GCAGC 4 cut(s) 298, 395, 831, 853
BccI CCATC 5 cut(s) 173, 323, 500, 772, 927
BceAI ACGGC 2 cut(s) 245, 1018
BcgI CGANNNNNNTGC 4 cut(s) 593, 627, 637, 671
BciT130I CCWGG 1 cut(s) 993
BcnI CCSGG 3 cut(s) 665, 907, 968
BcoDI GTCTC 2 cut(s) 475, 953
BfaI CTAG 1 cut(s) 896
BfmI CTRYAG 1 cut(s) 845
BmcAI AGTACT 1 cut(s) 671
Bme1390I CCNGG 4 cut(s) 665, 907, 968, 993
Bme18I GGWCC 2 cut(s) 714, 793
BmeRI GACNNNNNGTC 1 cut(s) 572
BmeT110I CYCGRG 1 cut(s) 472
BmgBI CACGTC 1 cut(s) 469
BmgT120I GGNCC 2 cut(s) 714, 793
BmiI GGNNCC 3 cut(s) 304, 938, 1086
BmrFI CCNGG 4 cut(s) 665, 907, 968, 993
BmsI GCATC 3 cut(s) 124, 828, 997
BpiI GAAGAC 1 cut(s) 213
BpmI CTGGAG 1 cut(s) 820
BpuMI CCSGG 3 cut(s) 665, 907, 968
Bsa29I ATCGAT 1 cut(s) 786
BsaAI YACGTR 1 cut(s) 268
BsaBI GATNNNNATC 1 cut(s) 782
BsaI GGTCTC 1 cut(s) 953
BsaJI CCNNGG 7 cut(s) 298, 306, 504, 634, 663, 967, 1034
BsaWI WCCGGW 1 cut(s) 747
BsaXI ACNNNNNCTCC 4 cut(s) 569, 599, 793, 823
Bsc4I CCNNNNNNNGG 1 cut(s) 472
Bse118I RCCGGY 1 cut(s) 770
Bse3DI GCAATG 2 cut(s) 279, 609
Bse8I GATNNNNATC 1 cut(s) 782
BseBI CCWGG 1 cut(s) 993
BseCI ATCGAT 1 cut(s) 786
BseDI CCNNGG 7 cut(s) 298, 306, 504, 634, 663, 967, 1034
BseGI GGATG 5 cut(s) 294, 315, 492, 843, 988
BseJI GATNNNNATC 1 cut(s) 782
BseLI CCNNNNNNNGG 1 cut(s) 472
BseMI GCAATG 2 cut(s) 279, 609
BseRI GAGGAG 2 cut(s) 328, 539
BseXI GCAGC 4 cut(s) 298, 395, 831, 853
Bsh1236I CGCG 7 cut(s) 113, 300, 392, 405, 623, 821, 1076
BshFI GGCC 2 cut(s) 755, 1060
BshVI ATCGAT 1 cut(s) 786
BsiHKAI GWGCWC 3 cut(s) 650, 873, 930
BsiHKCI CYCGRG 1 cut(s) 472
BsiSI CCGG 6 cut(s) 665, 748, 771, 906, 967, 979
BsiWI CGTACG 1 cut(s) 562
BslFI GGGAC 3 cut(s) 330, 379, 489
BslI CCNNNNNNNGG 1 cut(s) 472
BsmAI GTCTC 2 cut(s) 475, 953
BsmBI CGTCTC 1 cut(s) 475
BsmFI GGGAC 3 cut(s) 330, 379, 489
BsnI GGCC 2 cut(s) 755, 1060
Bso31I GGTCTC 1 cut(s) 953
BsoBI CYCGRG 1 cut(s) 472
Bsp1286I GDGCHC 4 cut(s) 650, 873, 930, 1087
Bsp143I GATC 5 cut(s) 243, 589, 783, 787, 1093
Bsp19I CCATGG 1 cut(s) 306
BspANI GGCC 2 cut(s) 755, 1060
BspDI ATCGAT 1 cut(s) 786
BspFNI CGCG 7 cut(s) 113, 300, 392, 405, 623, 821, 1076
BspHI TCATGA 1 cut(s) 240
BspLI GGNNCC 3 cut(s) 304, 938, 1086
BspMAI CTGCAG 1 cut(s) 849
BspTNI GGTCTC 1 cut(s) 953
BsrBI CCGCTC 1 cut(s) 498
BsrDI GCAATG 2 cut(s) 279, 609
BsrFI RCCGGY 1 cut(s) 770
BssAI RCCGGY 1 cut(s) 770
BssECI CCNNGG 7 cut(s) 298, 306, 504, 634, 663, 967, 1034
BssMI GATC 5 cut(s) 243, 589, 783, 787, 1093
BssT1I CCWWGG 2 cut(s) 306, 504
Bst2UI CCWGG 1 cut(s) 993
Bst4CI ACNGT 3 cut(s) 175, 652, 674
Bst6I CTCTTC 2 cut(s) 825, 845
BstBAI YACGTR 1 cut(s) 268
BstC8I GCNNGC 1 cut(s) 621
BstDSI CCRYGG 3 cut(s) 298, 306, 1034
BstF5I GGATG 5 cut(s) 294, 315, 492, 843, 988
BstFNI CGCG 7 cut(s) 113, 300, 392, 405, 623, 821, 1076
BstHHI GCGC 3 cut(s) 115, 407, 1078
BstKTI GATC 5 cut(s) 246, 592, 786, 790, 1096
BstMAI GTCTC 2 cut(s) 475, 953
BstMBI GATC 5 cut(s) 243, 589, 783, 787, 1093
BstMWI GCNNNNNNNGC 6 cut(s) 380, 389, 413, 620, 645, 1082
BstNI CCWGG 1 cut(s) 993
BstSCI CCNGG 4 cut(s) 663, 905, 966, 991
BstSFI CTRYAG 1 cut(s) 845
BstUI CGCG 7 cut(s) 113, 300, 392, 405, 623, 821, 1076
BstV1I GCAGC 4 cut(s) 298, 395, 831, 853
BstV2I GAAGAC 1 cut(s) 213
Bsu15I ATCGAT 1 cut(s) 786
BsuRI GGCC 2 cut(s) 755, 1060
BsuTUI ATCGAT 1 cut(s) 786
BtgI CCRYGG 3 cut(s) 298, 306, 1034
BtrI CACGTC 1 cut(s) 469
BtsCI GGATG 5 cut(s) 294, 315, 492, 843, 988
Cac8I GCNNGC 1 cut(s) 621
CciI TCATGA 1 cut(s) 240
CfoI GCGC 3 cut(s) 115, 407, 1078
Cfr10I RCCGGY 1 cut(s) 770
Cfr13I GGNCC 2 cut(s) 714, 793
Cfr42I CCGCGG 1 cut(s) 301
ClaI ATCGAT 1 cut(s) 786
CseI GACGC 2 cut(s) 381, 1082
Csp6I GTAC 2 cut(s) 563, 670
CviAII CATG 4 cut(s) 241, 307, 944, 1062
CviQI GTAC 2 cut(s) 563, 670
DpnI GATC 5 cut(s) 245, 591, 785, 789, 1095
DpnII GATC 5 cut(s) 243, 589, 783, 787, 1093
DrdI GACNNNNNNGTC 1 cut(s) 467
DriI GACNNNNNGTC 1 cut(s) 572
DseDI GACNNNNNNGTC 1 cut(s) 467
Eam1104I CTCTTC 2 cut(s) 825, 845
Eam1105I GACNNNNNGTC 1 cut(s) 572
EarI CTCTTC 2 cut(s) 825, 845
EciI GGCGGA 1 cut(s) 490
Ecl136II GAGCTC 1 cut(s) 871
Eco130I CCWWGG 2 cut(s) 306, 504
Eco147I AGGCCT 1 cut(s) 755
Eco24I GRGCYC 2 cut(s) 873, 1087
Eco31I GGTCTC 1 cut(s) 953
Eco47I GGWCC 2 cut(s) 714, 793
Eco53kI GAGCTC 1 cut(s) 871
Eco72I CACGTG 1 cut(s) 268
Eco88I CYCGRG 1 cut(s) 472
EcoICRI GAGCTC 1 cut(s) 871
EcoRII CCWGG 1 cut(s) 991
EcoT14I CCWWGG 2 cut(s) 306, 504
EcoT38I GRGCYC 2 cut(s) 873, 1087
ErhI CCWWGG 2 cut(s) 306, 504
Esp3I CGTCTC 1 cut(s) 475
FaeI CATG 4 cut(s) 244, 310, 947, 1065
FaiI YATR 5 cut(s) 242, 308, 945, 1063, 1092
FaqI GGGAC 3 cut(s) 330, 379, 489
FatI CATG 4 cut(s) 240, 306, 943, 1061
FauI CCCGC 1 cut(s) 260
FblI GTMKAC 2 cut(s) 576, 603
FokI GGATG 5 cut(s) 281, 302, 479, 850, 975
FriOI GRGCYC 2 cut(s) 873, 1087
FspBI CTAG 1 cut(s) 896
GlaI GCGC 3 cut(s) 114, 406, 1077
GsuI CTGGAG 1 cut(s) 820
HaeIII GGCC 2 cut(s) 755, 1060
HapII CCGG 6 cut(s) 665, 748, 771, 906, 967, 979
HgaI GACGC 2 cut(s) 381, 1082
HhaI GCGC 3 cut(s) 115, 407, 1078
Hin1II CATG 4 cut(s) 244, 310, 947, 1065
Hin6I GCGC 3 cut(s) 113, 405, 1076
HinP1I GCGC 3 cut(s) 113, 405, 1076
HincII GTYRAC 1 cut(s) 604
HindII GTYRAC 1 cut(s) 604
HinfI GANTC 7 cut(s) 461, 477, 570, 584, 861, 1003, 1121
HpaII CCGG 6 cut(s) 665, 748, 771, 906, 967, 979
HphI GGTGA 7 cut(s) 160, 427, 691, 793, 821, 968, 1012
Hpy166II GTNNAC 4 cut(s) 178, 265, 577, 604
Hpy188I TCNGA 1 cut(s) 589
Hpy188III TCNNGA 4 cut(s) 241, 474, 791, 1125
Hpy8I GTNNAC 4 cut(s) 178, 265, 577, 604
Hpy99I CGWCG 8 cut(s) 185, 188, 359, 374, 461, 570, 608, 644
HpyAV CCTTC 7 cut(s) 171, 370, 433, 448, 463, 732, 745
HpyCH4III ACNGT 3 cut(s) 175, 652, 674
HpyCH4IV ACGT 4 cut(s) 267, 354, 468, 737
HpyCH4V TGCA 4 cut(s) 841, 847, 988, 1012
HpyF10VI GCNNNNNNNGC 6 cut(s) 380, 389, 413, 620, 645, 1082
HpySE526I ACGT 4 cut(s) 267, 354, 468, 737
Hsp92II CATG 4 cut(s) 244, 310, 947, 1065
HspAI GCGC 3 cut(s) 113, 405, 1076
KspI CCGCGG 1 cut(s) 301
Kzo9I GATC 5 cut(s) 243, 589, 783, 787, 1093
LmnI GCTCC 5 cut(s) 136, 308, 503, 925, 1090
Lsp1109I GCAGC 4 cut(s) 298, 395, 831, 853
LweI GCATC 3 cut(s) 124, 828, 997
MaeI CTAG 1 cut(s) 896
MaeII ACGT 4 cut(s) 267, 354, 468, 737
MaeIII GTNAC 3 cut(s) 674, 758, 809
MalI GATC 5 cut(s) 245, 591, 785, 789, 1095
MbiI CCGCTC 1 cut(s) 498
MboI GATC 5 cut(s) 243, 589, 783, 787, 1093
MboII GAAGA 5 cut(s) 215, 218, 842, 862, 884
MhlI GDGCHC 4 cut(s) 650, 873, 930, 1087
MluCI AATT 1 cut(s) 982
MluI ACGCGT 1 cut(s) 390
MlyI GAGTC 6 cut(s) 455, 471, 578, 579, 1012, 1115
MmeI TCCRAC 2 cut(s) 104, 355
MslI CAYNNNNRTG 2 cut(s) 773, 1017
MspA1I CMGCKG 3 cut(s) 300, 798, 844
MspI CCGG 6 cut(s) 665, 748, 771, 906, 967, 979
MspR9I CCNGG 4 cut(s) 665, 907, 968, 993
MvaI CCWGG 1 cut(s) 993
MvnI CGCG 7 cut(s) 113, 300, 392, 405, 623, 821, 1076
MwoI GCNNNNNNNGC 6 cut(s) 380, 389, 413, 620, 645, 1082
NciI CCSGG 3 cut(s) 665, 907, 968
NcoI CCATGG 1 cut(s) 306
NdeII GATC 5 cut(s) 243, 589, 783, 787, 1093
NlaIII CATG 4 cut(s) 244, 310, 947, 1065
NlaIV GGNNCC 3 cut(s) 304, 938, 1086
NmeAIII GCCGAG 1 cut(s) 615
NmuCI GTSAC 1 cut(s) 809
OliI CACNNNNGTG 1 cut(s) 773
PagI TCATGA 1 cut(s) 240
PceI AGGCCT 1 cut(s) 755
PcsI WCGNNNNNNNCGW 4 cut(s) 189, 465, 579, 648
PfeI GAWTC 1 cut(s) 861
Pfl23II CGTACG 1 cut(s) 562
PleI GAGTC 6 cut(s) 455, 471, 578, 578, 1011, 1115
PmaCI CACGTG 1 cut(s) 268
PmlI CACGTG 1 cut(s) 268
PpsI GAGTC 6 cut(s) 455, 471, 578, 578, 1011, 1115
Ppu21I YACGTR 1 cut(s) 268
Psp124BI GAGCTC 1 cut(s) 873
Psp6I CCWGG 1 cut(s) 991
PspCI CACGTG 1 cut(s) 268
PspGI CCWGG 1 cut(s) 991
PspLI CGTACG 1 cut(s) 562
PspN4I GGNNCC 3 cut(s) 304, 938, 1086
PspPI GGNCC 2 cut(s) 714, 793
PstI CTGCAG 1 cut(s) 849
PvuII CAGCTG 1 cut(s) 844
RsaI GTAC 2 cut(s) 564, 671
RsaNI GTAC 2 cut(s) 563, 670
RseI CAYNNNNRTG 2 cut(s) 773, 1017
SacI GAGCTC 1 cut(s) 873
SacII CCGCGG 1 cut(s) 301
SalI GTCGAC 1 cut(s) 602
Sau3AI GATC 5 cut(s) 243, 589, 783, 787, 1093
Sau96I GGNCC 2 cut(s) 714, 793
ScaI AGTACT 1 cut(s) 671
SchI GAGTC 6 cut(s) 455, 471, 578, 579, 1012, 1115
ScrFI CCNGG 4 cut(s) 665, 907, 968, 993
SduI GDGCHC 4 cut(s) 650, 873, 930, 1087
SfaNI GCATC 3 cut(s) 124, 828, 997
SfcI CTRYAG 1 cut(s) 845
Sfr303I CCGCGG 1 cut(s) 301
SgrAI CRCCGGYG 1 cut(s) 770
SgrBI CCGCGG 1 cut(s) 301
SinI GGWCC 2 cut(s) 714, 793
SmiMI CAYNNNNRTG 2 cut(s) 773, 1017
Sse9I AATT 1 cut(s) 982
SseBI AGGCCT 1 cut(s) 755
SspMI CTAG 1 cut(s) 896
SstI GAGCTC 1 cut(s) 873
StuI AGGCCT 1 cut(s) 755
StyD4I CCNGG 4 cut(s) 663, 905, 966, 991
StyI CCWWGG 2 cut(s) 306, 504
TaaI ACNGT 3 cut(s) 175, 652, 674
TaiI ACGT 4 cut(s) 270, 357, 471, 740
TaqI TCGA 5 cut(s) 192, 456, 582, 603, 786
TasI AATT 1 cut(s) 982
TatI WGTACW 1 cut(s) 669
TauI GCSGC 6 cut(s) 110, 113, 303, 383, 662, 886
TfiI GAWTC 1 cut(s) 861
TseFI GTSAC 1 cut(s) 809
TseI GCWGC 4 cut(s) 311, 383, 841, 844
Tsp45I GTSAC 1 cut(s) 809
TspDTI ATGAA 3 cut(s) 25, 216, 229
TspGWI ACGGA 1 cut(s) 313
VpaK11BI GGWCC 2 cut(s) 714, 793
XapI RAATTY 1 cut(s) 982
XmiI GTMKAC 2 cut(s) 576, 603
XspI CTAG 1 cut(s) 896
ZrmI AGTACT 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.