Rw6G035700

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
60288926 .. 60290061
1136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G035700.1

Sequence Viewer

Length: 1101 bp
ATGCCCACGCCTAATCCCAAGCTACCTCTCCTTTTCATTCTCTCTCTCATTCTCTTTCCCATTCACTCTTGCTCTACTCCAACCAATGTAAATACCAACACCACCGCTGCCGCCGCCGCCGCGCATCATTTTAGAGAAGCTCCGCAGTTCTACAACTCCCCCGACTGCCCTTCCATCACCACCGTCCACGACGACGACTTCGACCCCGATGAAGAAGACGACAACAACAATAACAACCACCACCACTTCATGATCTGTTCCCGCCAAGCCGTCCACGTGGCAATGACTTTGGACACCGCCTACATCCGCGGCTCCATGGCTGCCATCCTCTCCGTCCTCCAACACTCCTCCTGTCCCCAAAACGTCGCCTTCCACTTCGTCGCCTCTGCCGCAGCCAACGCGTCCCACCTACGCGCCACCATTGCTTCCTCCTTCCCTTACCTCACCTTCCAAATCTACCCCTTCGACGACTCCCACGTCTCGGGACTCATCTCCACCTCCATCCGCTCCGCCTTGGACTGCCCTCTCAACTACGCCCGTAGCTACCTCGCCAACCTCCTCCCCCTCTGCGTACGACGAGTCGTCTACCTCGACTCCGATCTCATTCTGGTCGACGACATTCACCGTCTGGCCGCCCCGGAGTACTGCAACGCAAACTTCACTTCGTATTTCACCACTACATTCTGGTCCAATCCTTCTCTCTCGCTCACGTTCGCTGACCGGAAGGCCTGTTACTTCAACACCGGCGTGATGGTGATCGATCTGGACCGCTGGAGAGGGGGTGACTACACCGCGAAAATAGAAGAGTGGATGCAGCTGCAGAAGAGAATCAGAATCTACGAGCTCGGTTCGTTGCCGCCATTTCTTCTAGTTTTTGCGGGGAAAATAGCGCCTGTGGAGCACAGATGGAACCAACATGGTCTCGGTGGTGATAACTTCCGGGGGCTTTGCCGGAATTTGCATCCTGGTTCGGTGAGTCTTTTGCATTGGAGTGGAAAAGGGAAGCCGTGGGCGAGATTGGAAGCTAACAGGCCATGCCCTTTGGACGCGCTCTGGGCTCCTTATGATCTCTTGGAAACTCCATTTGTTTTGGACTCTTGA

Protein Analysis

366

Amino Acids

41.0

Weight (kDa)

6.07

Isoelectric Point (pI)

43.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 92 - 339 2.1e-44 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013972)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19300
fragaria_vesca FvH4_2g40370
malus_domestica MD08G1036800.v1.1
prunus_persica Prupe.1G384100_v2.0.a1
pyrus_communis pycom08g02940 pycom15g02880
rosa_chinensis RchiOBHm_Chr6g0300381
rosa_laevigata RLG00000011343
rosa_multiflora Rmu_co8373719.1_g000001 Rmu_sc0001670.1_g000014
rosa_roxburghii Rroxscaffold_7G00167850
rosa_rugosa Rorug06G0295500
rosa_samantha Rh6AG408200 Rh6BG415500 Rh6CG422900 Rh6DG408500
rosa_wichuraiana Rw6G035700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 476
AccBSI CCGCTC 1 cut(s) 507
AccI GTMKAC 2 cut(s) 585, 612
AccII CGCG 6 cut(s) 122, 309, 401, 414, 794, 1049
AcoI YGGCCR 1 cut(s) 630
AcsI RAATTY 1 cut(s) 955
AcvI CACGTG 1 cut(s) 277
AfaI GTAC 2 cut(s) 573, 644
AfiI CCNNNNNNNGG 1 cut(s) 481
AflIII ACRYGT 1 cut(s) 399
AgsI TTSAA 1 cut(s) 739
AhdI GACNNNNNGTC 1 cut(s) 581
AjiI CACGTC 1 cut(s) 478
AjnI CCWGG 1 cut(s) 964
AleI CACNNNNGTG 1 cut(s) 746
AluBI AGCT 6 cut(s) 22, 140, 543, 817, 844, 1025
AluI AGCT 6 cut(s) 22, 140, 543, 817, 844, 1025
Alw21I GWGCWC 2 cut(s) 846, 903
Alw26I GTCTC 2 cut(s) 484, 926
Ama87I CYCGRG 1 cut(s) 481
AoxI GGCC 3 cut(s) 630, 726, 1031
ApeKI GCWGC 5 cut(s) 107, 320, 392, 814, 817
ApoI RAATTY 1 cut(s) 955
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
AspLEI GCGC 4 cut(s) 124, 416, 892, 1051
AspS9I GGNCC 2 cut(s) 687, 766
AsuC2I CCSGG 2 cut(s) 638, 941
AsuHPI GGTGA 8 cut(s) 169, 436, 614, 664, 766, 794, 941, 985
AvaI CYCGRG 1 cut(s) 481
AvaII GGWCC 2 cut(s) 687, 766
BanII GRGCYC 2 cut(s) 846, 1060
BarI GAAGNNNNNNTAC 2 cut(s) 716, 748
BbrPI CACGTG 1 cut(s) 277
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 2 cut(s) 846, 903
BbvI GCAGC 5 cut(s) 94, 307, 404, 804, 826
BccI CCATC 5 cut(s) 182, 332, 509, 745, 900
BceAI ACGGC 2 cut(s) 254, 991
BciT130I CCWGG 1 cut(s) 966
BcnI CCSGG 2 cut(s) 638, 941
BcoDI GTCTC 2 cut(s) 484, 926
BfaI CTAG 1 cut(s) 869
BfmI CTRYAG 1 cut(s) 818
BfoI RGCGCY 1 cut(s) 893
BmcAI AGTACT 1 cut(s) 644
Bme1390I CCNGG 3 cut(s) 638, 941, 966
Bme18I GGWCC 2 cut(s) 687, 766
BmeRI GACNNNNNGTC 1 cut(s) 581
BmeT110I CYCGRG 1 cut(s) 481
BmgBI CACGTC 1 cut(s) 478
BmgT120I GGNCC 2 cut(s) 687, 766
BmiI GGNNCC 3 cut(s) 313, 911, 1059
BmrFI CCNGG 3 cut(s) 638, 941, 966
BmsI GCATC 3 cut(s) 133, 801, 970
BpiI GAAGAC 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 793
BpuMI CCSGG 2 cut(s) 638, 941
Bsa29I ATCGAT 1 cut(s) 759
BsaAI YACGTR 1 cut(s) 277
BsaBI GATNNNNATC 1 cut(s) 755
BsaI GGTCTC 1 cut(s) 926
BsaJI CCNNGG 6 cut(s) 307, 315, 513, 636, 940, 1007
BsaWI WCCGGW 1 cut(s) 720
BsaXI ACNNNNNCTCC 4 cut(s) 578, 608, 766, 796
Bsc4I CCNNNNNNNGG 1 cut(s) 481
Bse118I RCCGGY 1 cut(s) 743
Bse3DI GCAATG 2 cut(s) 288, 420
Bse8I GATNNNNATC 1 cut(s) 755
BseBI CCWGG 1 cut(s) 966
BseCI ATCGAT 1 cut(s) 759
BseDI CCNNGG 6 cut(s) 307, 315, 513, 636, 940, 1007
BseGI GGATG 5 cut(s) 303, 324, 501, 816, 961
BseJI GATNNNNATC 1 cut(s) 755
BseLI CCNNNNNNNGG 1 cut(s) 481
BseMI GCAATG 2 cut(s) 288, 420
BseRI GAGGAG 2 cut(s) 337, 548
BseXI GCAGC 5 cut(s) 94, 307, 404, 804, 826
Bsh1236I CGCG 6 cut(s) 122, 309, 401, 414, 794, 1049
BshFI GGCC 3 cut(s) 632, 728, 1033
BshVI ATCGAT 1 cut(s) 759
BsiHKAI GWGCWC 2 cut(s) 846, 903
BsiHKCI CYCGRG 1 cut(s) 481
BsiSI CCGG 5 cut(s) 638, 721, 744, 940, 952
BsiWI CGTACG 1 cut(s) 571
BslFI GGGAC 3 cut(s) 339, 388, 498
BslI CCNNNNNNNGG 1 cut(s) 481
BsmAI GTCTC 2 cut(s) 484, 926
BsmBI CGTCTC 1 cut(s) 484
BsmFI GGGAC 3 cut(s) 339, 388, 498
BsnI GGCC 3 cut(s) 632, 728, 1033
Bso31I GGTCTC 1 cut(s) 926
BsoBI CYCGRG 1 cut(s) 481
Bsp1286I GDGCHC 3 cut(s) 846, 903, 1060
Bsp143I GATC 5 cut(s) 252, 598, 756, 760, 1066
Bsp19I CCATGG 1 cut(s) 315
BspANI GGCC 3 cut(s) 632, 728, 1033
BspDI ATCGAT 1 cut(s) 759
BspFNI CGCG 6 cut(s) 122, 309, 401, 414, 794, 1049
BspHI TCATGA 1 cut(s) 249
BspLI GGNNCC 3 cut(s) 313, 911, 1059
BspMAI CTGCAG 1 cut(s) 822
BspTNI GGTCTC 1 cut(s) 926
BsrBI CCGCTC 1 cut(s) 507
BsrDI GCAATG 2 cut(s) 288, 420
BsrFI RCCGGY 1 cut(s) 743
BssAI RCCGGY 1 cut(s) 743
BssECI CCNNGG 6 cut(s) 307, 315, 513, 636, 940, 1007
BssMI GATC 5 cut(s) 252, 598, 756, 760, 1066
BssT1I CCWWGG 2 cut(s) 315, 513
Bst2UI CCWGG 1 cut(s) 966
Bst4CI ACNGT 2 cut(s) 184, 626
Bst6I CTCTTC 2 cut(s) 798, 818
BstBAI YACGTR 1 cut(s) 277
BstDSI CCRYGG 3 cut(s) 307, 315, 1007
BstF5I GGATG 5 cut(s) 303, 324, 501, 816, 961
BstFNI CGCG 6 cut(s) 122, 309, 401, 414, 794, 1049
BstH2I RGCGCY 1 cut(s) 893
BstHHI GCGC 4 cut(s) 124, 416, 892, 1051
BstKTI GATC 5 cut(s) 255, 601, 759, 763, 1069
BstMAI GTCTC 2 cut(s) 484, 926
BstMBI GATC 5 cut(s) 252, 598, 756, 760, 1066
BstMWI GCNNNNNNNGC 8 cut(s) 113, 116, 119, 389, 398, 422, 898, 1055
BstNI CCWGG 1 cut(s) 966
BstSCI CCNGG 3 cut(s) 636, 939, 964
BstSFI CTRYAG 1 cut(s) 818
BstUI CGCG 6 cut(s) 122, 309, 401, 414, 794, 1049
BstV1I GCAGC 5 cut(s) 94, 307, 404, 804, 826
BstV2I GAAGAC 1 cut(s) 222
Bsu15I ATCGAT 1 cut(s) 759
BsuRI GGCC 3 cut(s) 632, 728, 1033
BsuTUI ATCGAT 1 cut(s) 759
BtgI CCRYGG 3 cut(s) 307, 315, 1007
BtrI CACGTC 1 cut(s) 478
BtsCI GGATG 5 cut(s) 303, 324, 501, 816, 961
CciI TCATGA 1 cut(s) 249
CfoI GCGC 4 cut(s) 124, 416, 892, 1051
Cfr10I RCCGGY 1 cut(s) 743
Cfr13I GGNCC 2 cut(s) 687, 766
Cfr42I CCGCGG 1 cut(s) 310
ClaI ATCGAT 1 cut(s) 759
CseI GACGC 2 cut(s) 390, 1055
Csp6I GTAC 2 cut(s) 572, 643
CviAII CATG 4 cut(s) 250, 316, 917, 1035
CviQI GTAC 2 cut(s) 572, 643
DpnI GATC 5 cut(s) 254, 600, 758, 762, 1068
DpnII GATC 5 cut(s) 252, 598, 756, 760, 1066
DrdI GACNNNNNNGTC 1 cut(s) 476
DriI GACNNNNNGTC 1 cut(s) 581
DseDI GACNNNNNNGTC 1 cut(s) 476
EaeI YGGCCR 1 cut(s) 630
Eam1104I CTCTTC 2 cut(s) 798, 818
Eam1105I GACNNNNNGTC 1 cut(s) 581
EarI CTCTTC 2 cut(s) 798, 818
EciI GGCGGA 1 cut(s) 499
Ecl136II GAGCTC 1 cut(s) 844
Eco130I CCWWGG 2 cut(s) 315, 513
Eco147I AGGCCT 1 cut(s) 728
Eco24I GRGCYC 2 cut(s) 846, 1060
Eco31I GGTCTC 1 cut(s) 926
Eco47I GGWCC 2 cut(s) 687, 766
Eco53kI GAGCTC 1 cut(s) 844
Eco72I CACGTG 1 cut(s) 277
Eco88I CYCGRG 1 cut(s) 481
EcoICRI GAGCTC 1 cut(s) 844
EcoRII CCWGG 1 cut(s) 964
EcoT14I CCWWGG 2 cut(s) 315, 513
EcoT38I GRGCYC 2 cut(s) 846, 1060
ErhI CCWWGG 2 cut(s) 315, 513
Esp3I CGTCTC 1 cut(s) 484
FaeI CATG 4 cut(s) 253, 319, 920, 1038
FaiI YATR 5 cut(s) 251, 317, 918, 1036, 1065
FaqI GGGAC 3 cut(s) 339, 388, 498
FatI CATG 4 cut(s) 249, 315, 916, 1034
FauI CCCGC 2 cut(s) 269, 871
FblI GTMKAC 2 cut(s) 585, 612
FokI GGATG 5 cut(s) 290, 311, 488, 823, 948
FriOI GRGCYC 2 cut(s) 846, 1060
FspBI CTAG 1 cut(s) 869
GlaI GCGC 4 cut(s) 123, 415, 891, 1050
GsuI CTGGAG 1 cut(s) 793
HaeII RGCGCY 1 cut(s) 893
HaeIII GGCC 3 cut(s) 632, 728, 1033
HapII CCGG 5 cut(s) 638, 721, 744, 940, 952
HgaI GACGC 2 cut(s) 390, 1055
HhaI GCGC 4 cut(s) 124, 416, 892, 1051
Hin1II CATG 4 cut(s) 253, 319, 920, 1038
Hin6I GCGC 4 cut(s) 122, 414, 890, 1049
HinP1I GCGC 4 cut(s) 122, 414, 890, 1049
HincII GTYRAC 1 cut(s) 613
HindII GTYRAC 1 cut(s) 613
HinfI GANTC 8 cut(s) 470, 486, 579, 593, 828, 834, 976, 1094
HpaII CCGG 5 cut(s) 638, 721, 744, 940, 952
HphI GGTGA 8 cut(s) 169, 436, 614, 664, 766, 794, 941, 985
Hpy166II GTNNAC 4 cut(s) 187, 274, 586, 613
Hpy188I TCNGA 2 cut(s) 598, 833
Hpy188III TCNNGA 4 cut(s) 250, 483, 764, 1098
Hpy8I GTNNAC 4 cut(s) 187, 274, 586, 613
Hpy99I CGWCG 7 cut(s) 194, 197, 368, 383, 470, 579, 617
HpyAV CCTTC 7 cut(s) 180, 379, 442, 457, 472, 705, 718
HpyCH4III ACNGT 2 cut(s) 184, 626
HpyCH4IV ACGT 4 cut(s) 276, 363, 477, 710
HpyCH4V TGCA 5 cut(s) 648, 814, 820, 961, 985
HpyF10VI GCNNNNNNNGC 8 cut(s) 113, 116, 119, 389, 398, 422, 898, 1055
HpySE526I ACGT 4 cut(s) 276, 363, 477, 710
Hsp92II CATG 4 cut(s) 253, 319, 920, 1038
HspAI GCGC 4 cut(s) 122, 414, 890, 1049
KspI CCGCGG 1 cut(s) 310
Kzo9I GATC 5 cut(s) 252, 598, 756, 760, 1066
LmnI GCTCC 5 cut(s) 145, 317, 512, 898, 1063
Lsp1109I GCAGC 5 cut(s) 94, 307, 404, 804, 826
LweI GCATC 3 cut(s) 133, 801, 970
MaeI CTAG 1 cut(s) 869
MaeII ACGT 4 cut(s) 276, 363, 477, 710
MaeIII GTNAC 2 cut(s) 731, 782
MalI GATC 5 cut(s) 254, 600, 758, 762, 1068
MbiI CCGCTC 1 cut(s) 507
MboI GATC 5 cut(s) 252, 598, 756, 760, 1066
MboII GAAGA 5 cut(s) 224, 227, 815, 835, 857
MhlI GDGCHC 3 cut(s) 846, 903, 1060
MluCI AATT 1 cut(s) 955
MluI ACGCGT 1 cut(s) 399
MlyI GAGTC 6 cut(s) 464, 480, 587, 588, 985, 1088
MmeI TCCRAC 2 cut(s) 104, 364
MslI CAYNNNNRTG 2 cut(s) 746, 990
MspA1I CMGCKG 4 cut(s) 107, 309, 771, 817
MspI CCGG 5 cut(s) 638, 721, 744, 940, 952
MspR9I CCNGG 3 cut(s) 638, 941, 966
MvaI CCWGG 1 cut(s) 966
MvnI CGCG 6 cut(s) 122, 309, 401, 414, 794, 1049
MwoI GCNNNNNNNGC 8 cut(s) 113, 116, 119, 389, 398, 422, 898, 1055
NciI CCSGG 2 cut(s) 638, 941
NcoI CCATGG 1 cut(s) 315
NdeII GATC 5 cut(s) 252, 598, 756, 760, 1066
NlaIII CATG 4 cut(s) 253, 319, 920, 1038
NlaIV GGNNCC 3 cut(s) 313, 911, 1059
NmuCI GTSAC 1 cut(s) 782
OliI CACNNNNGTG 1 cut(s) 746
PagI TCATGA 1 cut(s) 249
PceI AGGCCT 1 cut(s) 728
PcsI WCGNNNNNNNCGW 3 cut(s) 198, 474, 588
PfeI GAWTC 2 cut(s) 828, 834
Pfl23II CGTACG 1 cut(s) 571
PleI GAGTC 6 cut(s) 464, 480, 587, 587, 984, 1088
PmaCI CACGTG 1 cut(s) 277
PmlI CACGTG 1 cut(s) 277
PpsI GAGTC 6 cut(s) 464, 480, 587, 587, 984, 1088
Ppu21I YACGTR 1 cut(s) 277
Psp124BI GAGCTC 1 cut(s) 846
Psp6I CCWGG 1 cut(s) 964
PspCI CACGTG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 964
PspLI CGTACG 1 cut(s) 571
PspN4I GGNNCC 3 cut(s) 313, 911, 1059
PspPI GGNCC 2 cut(s) 687, 766
PstI CTGCAG 1 cut(s) 822
PvuII CAGCTG 1 cut(s) 817
RsaI GTAC 2 cut(s) 573, 644
RsaNI GTAC 2 cut(s) 572, 643
RseI CAYNNNNRTG 2 cut(s) 746, 990
SacI GAGCTC 1 cut(s) 846
SacII CCGCGG 1 cut(s) 310
SalI GTCGAC 1 cut(s) 611
Sau3AI GATC 5 cut(s) 252, 598, 756, 760, 1066
Sau96I GGNCC 2 cut(s) 687, 766
ScaI AGTACT 1 cut(s) 644
SchI GAGTC 6 cut(s) 464, 480, 587, 588, 985, 1088
ScrFI CCNGG 3 cut(s) 638, 941, 966
SduI GDGCHC 3 cut(s) 846, 903, 1060
SfaNI GCATC 3 cut(s) 133, 801, 970
SfcI CTRYAG 1 cut(s) 818
Sfr303I CCGCGG 1 cut(s) 310
SgrAI CRCCGGYG 1 cut(s) 743
SgrBI CCGCGG 1 cut(s) 310
SinI GGWCC 2 cut(s) 687, 766
SmiMI CAYNNNNRTG 2 cut(s) 746, 990
Sse9I AATT 1 cut(s) 955
SseBI AGGCCT 1 cut(s) 728
SspMI CTAG 1 cut(s) 869
SstI GAGCTC 1 cut(s) 846
StuI AGGCCT 1 cut(s) 728
StyD4I CCNGG 3 cut(s) 636, 939, 964
StyI CCWWGG 2 cut(s) 315, 513
TaaI ACNGT 2 cut(s) 184, 626
TaiI ACGT 4 cut(s) 279, 366, 480, 713
TaqI TCGA 5 cut(s) 201, 465, 591, 612, 759
TasI AATT 1 cut(s) 955
TatI WGTACW 1 cut(s) 642
TauI GCSGC 8 cut(s) 113, 116, 119, 122, 312, 392, 635, 859
TfiI GAWTC 2 cut(s) 828, 834
TseFI GTSAC 1 cut(s) 782
TseI GCWGC 5 cut(s) 107, 320, 392, 814, 817
Tsp45I GTSAC 1 cut(s) 782
TspDTI ATGAA 3 cut(s) 25, 225, 238
TspGWI ACGGA 1 cut(s) 322
VpaK11BI GGWCC 2 cut(s) 687, 766
XapI RAATTY 1 cut(s) 955
XmiI GTMKAC 2 cut(s) 585, 612
XspI CTAG 1 cut(s) 869
ZrmI AGTACT 1 cut(s) 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.