RchiOBHm_Chr6g0300381

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
61238368 .. 61240359
1992 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26975

Sequence Viewer

Length: 1143 bp
ATGCCCACGCCTAATCCCAAGCTACCTCTCCTTTTCATTCTCTCTCTCATTCTCTTTCCCATTCACTCTTGCTCTACTCCAACCAATGTAAATACCAACACCACCGCTGCTGCTGCCGCCGCCGCCGCCCATCATTTTAGAGAAGCTCCGCAGTTCTATAACTCCCCCGACTGCCCTTCCATCACTACCGTCCACGACGACGACTTCGACCCCGATGAAGAAGACGACAACAACAATAACAACCACCACCACTTCATGATCTGTTCCCGCCAAGCCGTTCACGTGGCAATGACTTTGGACACCGCCTACATCCGCGGCTCCATGGCTGCCATCCTCTCCGTCCTCCAACACTCCTCCTGTCCCCAAAACGTCGCCTTCCACTTCGTCGCCTCTGCTGCAGCCAACGCGTCCCATCTACGCGCCACTATTGCTTCCTCCTTCCCTTACCTCACCTTCCAAATCTACCCCTTCGACGACTCCCACGTCTCGGGACTCATCTCCACCTCCATCCGCTCCGCCTTGGACTGCCCTCTCAACTACGCACGTAGCTACCTCGCCAACCTCCTCCCCCTCTGCGTACGACGAGTCGTCTACCTCGACTCCGATCTCATTCTGGTCGACGACATTGCCAAGCTCGCGGACATTCCCCTCGGCGACGAGAGCACCGTCCTCGCCGCCCCGGAGTACTGCAACGCAAACTTCACTTCGTATTTCACCACTACATTCTGGTCCAATCCTTCTCTCTCGCTCACGTTCGCTGACCGAAAGGCCTGTTACTTCAACACCGGCGTGATGGTGATCGATCTGGATCGCTGGAGAGGGGGTGACTACACCGCGAAAATAGAAGAGTGGATGCAGCTGCAGAAGAGAATGAGAATCTACGAGCTCGGTTCGTTGCCGCCATTTCTTCTAGTTTTTGCCGGGAAAATAGCGCCTGTGGAGCACAGATGGAACCAACATGGTCTCGGTGGTGATAACTTCCGGGGGCTTTGCCGGAATTTGCATCCTGGTTCGGTGAGTCTTTTGCATTGGAGTGGAAAAGGGAAGCCGTGGGCGAGATTGGAAGCTAACAGGCCATGCCCTTTGGACGCGCTCTGGGCTCCTTATGATCTCTTGGAAACTCCATTTGTTTTGGACTCTTGA

Protein Analysis

380

Amino Acids

42.27

Weight (kDa)

5.75

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 94 - 353 3.5e-48 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013972)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19300
fragaria_vesca FvH4_2g40370
malus_domestica MD08G1036800.v1.1
prunus_persica Prupe.1G384100_v2.0.a1
pyrus_communis pycom08g02940 pycom15g02880
rosa_chinensis RchiOBHm_Chr6g0300381
rosa_laevigata RLG00000011343
rosa_multiflora Rmu_co8373719.1_g000001 Rmu_sc0001670.1_g000014
rosa_roxburghii Rroxscaffold_7G00167850
rosa_rugosa Rorug06G0295500
rosa_samantha Rh6AG408200 Rh6BG415500 Rh6CG422900 Rh6DG408500
rosa_wichuraiana Rw6G035700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 482
AccBSI CCGCTC 1 cut(s) 513
AccI GTMKAC 2 cut(s) 591, 618
AccII CGCG 6 cut(s) 315, 407, 420, 638, 836, 1091
AclWI GGATC 1 cut(s) 816
AcsI RAATTY 1 cut(s) 997
AcvI CACGTG 1 cut(s) 283
AfaI GTAC 2 cut(s) 579, 686
AfiI CCNNNNNNNGG 1 cut(s) 487
AflIII ACRYGT 1 cut(s) 405
AgsI TTSAA 1 cut(s) 781
AhdI GACNNNNNGTC 1 cut(s) 587
AjiI CACGTC 1 cut(s) 484
AjnI CCWGG 1 cut(s) 1006
AleI CACNNNNGTG 1 cut(s) 788
AluBI AGCT 7 cut(s) 22, 146, 549, 634, 859, 886, 1067
AluI AGCT 7 cut(s) 22, 146, 549, 634, 859, 886, 1067
Alw21I GWGCWC 3 cut(s) 665, 888, 945
Alw26I GTCTC 2 cut(s) 490, 968
AlwI GGATC 1 cut(s) 816
Ama87I CYCGRG 1 cut(s) 487
AoxI GGCC 2 cut(s) 768, 1073
ApeKI GCWGC 8 cut(s) 107, 110, 113, 326, 395, 398, 856, 859
ApoI RAATTY 1 cut(s) 997
ArsI GACNNNNNNTTYG 2 cut(s) 188, 220
AspLEI GCGC 3 cut(s) 422, 934, 1093
AspS9I GGNCC 1 cut(s) 729
AsuC2I CCSGG 3 cut(s) 680, 922, 983
AsuHPI GGTGA 6 cut(s) 442, 706, 808, 836, 983, 1027
AvaI CYCGRG 1 cut(s) 487
AvaII GGWCC 1 cut(s) 729
BanII GRGCYC 2 cut(s) 888, 1102
BbrPI CACGTG 1 cut(s) 283
BbsI GAAGAC 1 cut(s) 228
Bbv12I GWGCWC 3 cut(s) 665, 888, 945
BbvI GCAGC 8 cut(s) 94, 97, 100, 313, 382, 410, 846, 868
BccI CCATC 7 cut(s) 138, 188, 338, 420, 515, 787, 942
BceAI ACGGC 2 cut(s) 260, 1033
BcgI CGANNNNNNTGC 4 cut(s) 608, 642, 652, 686
BciT130I CCWGG 1 cut(s) 1008
BcnI CCSGG 3 cut(s) 680, 922, 983
BcoDI GTCTC 2 cut(s) 490, 968
BfaI CTAG 1 cut(s) 911
BfmI CTRYAG 2 cut(s) 396, 860
BfoI RGCGCY 1 cut(s) 935
BmcAI AGTACT 1 cut(s) 686
Bme1390I CCNGG 4 cut(s) 680, 922, 983, 1008
Bme18I GGWCC 1 cut(s) 729
BmeRI GACNNNNNGTC 1 cut(s) 587
BmeT110I CYCGRG 1 cut(s) 487
BmgBI CACGTC 1 cut(s) 484
BmgT120I GGNCC 1 cut(s) 729
BmiI GGNNCC 3 cut(s) 319, 953, 1101
BmrFI CCNGG 4 cut(s) 680, 922, 983, 1008
BmsI GCATC 2 cut(s) 843, 1012
BpiI GAAGAC 1 cut(s) 228
BpmI CTGGAG 1 cut(s) 835
BpuMI CCSGG 3 cut(s) 680, 922, 983
Bsa29I ATCGAT 1 cut(s) 801
BsaAI YACGTR 2 cut(s) 283, 545
BsaBI GATNNNNATC 2 cut(s) 797, 807
BsaI GGTCTC 1 cut(s) 968
BsaJI CCNNGG 7 cut(s) 313, 321, 519, 649, 678, 982, 1049
BsaXI ACNNNNNCTCC 4 cut(s) 584, 614, 808, 838
Bsc4I CCNNNNNNNGG 1 cut(s) 487
Bse118I RCCGGY 1 cut(s) 785
Bse3DI GCAATG 2 cut(s) 294, 624
Bse8I GATNNNNATC 2 cut(s) 797, 807
BseBI CCWGG 1 cut(s) 1008
BseCI ATCGAT 1 cut(s) 801
BseDI CCNNGG 7 cut(s) 313, 321, 519, 649, 678, 982, 1049
BseGI GGATG 5 cut(s) 309, 330, 507, 858, 1003
BseJI GATNNNNATC 2 cut(s) 797, 807
BseLI CCNNNNNNNGG 1 cut(s) 487
BseMI GCAATG 2 cut(s) 294, 624
BseRI GAGGAG 2 cut(s) 343, 554
BseXI GCAGC 8 cut(s) 94, 97, 100, 313, 382, 410, 846, 868
Bsh1236I CGCG 6 cut(s) 315, 407, 420, 638, 836, 1091
BshFI GGCC 2 cut(s) 770, 1075
BshVI ATCGAT 1 cut(s) 801
BsiHKAI GWGCWC 3 cut(s) 665, 888, 945
BsiHKCI CYCGRG 1 cut(s) 487
BsiSI CCGG 5 cut(s) 680, 786, 921, 982, 994
BsiWI CGTACG 1 cut(s) 577
BslFI GGGAC 3 cut(s) 345, 394, 504
BslI CCNNNNNNNGG 1 cut(s) 487
BsmAI GTCTC 2 cut(s) 490, 968
BsmBI CGTCTC 1 cut(s) 490
BsmFI GGGAC 3 cut(s) 345, 394, 504
BsnI GGCC 2 cut(s) 770, 1075
Bso31I GGTCTC 1 cut(s) 968
BsoBI CYCGRG 1 cut(s) 487
Bsp1286I GDGCHC 4 cut(s) 665, 888, 945, 1102
Bsp143I GATC 6 cut(s) 258, 604, 798, 802, 808, 1108
Bsp19I CCATGG 1 cut(s) 321
BspANI GGCC 2 cut(s) 770, 1075
BspDI ATCGAT 1 cut(s) 801
BspFNI CGCG 6 cut(s) 315, 407, 420, 638, 836, 1091
BspHI TCATGA 1 cut(s) 255
BspLI GGNNCC 3 cut(s) 319, 953, 1101
BspMAI CTGCAG 2 cut(s) 400, 864
BspPI GGATC 1 cut(s) 816
BspTNI GGTCTC 1 cut(s) 968
BsrBI CCGCTC 1 cut(s) 513
BsrDI GCAATG 2 cut(s) 294, 624
BsrFI RCCGGY 1 cut(s) 785
BssAI RCCGGY 1 cut(s) 785
BssECI CCNNGG 7 cut(s) 313, 321, 519, 649, 678, 982, 1049
BssMI GATC 6 cut(s) 258, 604, 798, 802, 808, 1108
BssT1I CCWWGG 2 cut(s) 321, 519
Bst2UI CCWGG 1 cut(s) 1008
Bst4CI ACNGT 2 cut(s) 190, 667
Bst6I CTCTTC 2 cut(s) 840, 860
BstBAI YACGTR 2 cut(s) 283, 545
BstC8I GCNNGC 1 cut(s) 636
BstDSI CCRYGG 3 cut(s) 313, 321, 1049
BstF5I GGATG 5 cut(s) 309, 330, 507, 858, 1003
BstFNI CGCG 6 cut(s) 315, 407, 420, 638, 836, 1091
BstH2I RGCGCY 1 cut(s) 935
BstHHI GCGC 3 cut(s) 422, 934, 1093
BstKTI GATC 6 cut(s) 261, 607, 801, 805, 811, 1111
BstMAI GTCTC 2 cut(s) 490, 968
BstMBI GATC 6 cut(s) 258, 604, 798, 802, 808, 1108
BstNI CCWGG 1 cut(s) 1008
BstSCI CCNGG 4 cut(s) 678, 920, 981, 1006
BstSFI CTRYAG 2 cut(s) 396, 860
BstUI CGCG 6 cut(s) 315, 407, 420, 638, 836, 1091
BstV1I GCAGC 8 cut(s) 94, 97, 100, 313, 382, 410, 846, 868
BstV2I GAAGAC 1 cut(s) 228
Bsu15I ATCGAT 1 cut(s) 801
BsuRI GGCC 2 cut(s) 770, 1075
BsuTUI ATCGAT 1 cut(s) 801
BtgI CCRYGG 3 cut(s) 313, 321, 1049
BtrI CACGTC 1 cut(s) 484
BtsCI GGATG 5 cut(s) 309, 330, 507, 858, 1003
Cac8I GCNNGC 1 cut(s) 636
CciI TCATGA 1 cut(s) 255
CfoI GCGC 3 cut(s) 422, 934, 1093
Cfr10I RCCGGY 1 cut(s) 785
Cfr13I GGNCC 1 cut(s) 729
Cfr42I CCGCGG 1 cut(s) 316
ClaI ATCGAT 1 cut(s) 801
CseI GACGC 2 cut(s) 396, 1097
Csp6I GTAC 2 cut(s) 578, 685
CviAII CATG 4 cut(s) 256, 322, 959, 1077
CviQI GTAC 2 cut(s) 578, 685
DpnI GATC 6 cut(s) 260, 606, 800, 804, 810, 1110
DpnII GATC 6 cut(s) 258, 604, 798, 802, 808, 1108
DrdI GACNNNNNNGTC 1 cut(s) 482
DriI GACNNNNNGTC 1 cut(s) 587
DseDI GACNNNNNNGTC 1 cut(s) 482
Eam1104I CTCTTC 2 cut(s) 840, 860
Eam1105I GACNNNNNGTC 1 cut(s) 587
EarI CTCTTC 2 cut(s) 840, 860
EciI GGCGGA 1 cut(s) 505
Ecl136II GAGCTC 1 cut(s) 886
Eco130I CCWWGG 2 cut(s) 321, 519
Eco147I AGGCCT 1 cut(s) 770
Eco24I GRGCYC 2 cut(s) 888, 1102
Eco31I GGTCTC 1 cut(s) 968
Eco47I GGWCC 1 cut(s) 729
Eco53kI GAGCTC 1 cut(s) 886
Eco72I CACGTG 1 cut(s) 283
Eco88I CYCGRG 1 cut(s) 487
EcoICRI GAGCTC 1 cut(s) 886
EcoRII CCWGG 1 cut(s) 1006
EcoT14I CCWWGG 2 cut(s) 321, 519
EcoT38I GRGCYC 2 cut(s) 888, 1102
ErhI CCWWGG 2 cut(s) 321, 519
Esp3I CGTCTC 1 cut(s) 490
FaeI CATG 4 cut(s) 259, 325, 962, 1080
FaiI YATR 6 cut(s) 159, 257, 323, 960, 1078, 1107
FaqI GGGAC 3 cut(s) 345, 394, 504
FatI CATG 4 cut(s) 255, 321, 958, 1076
FauI CCCGC 1 cut(s) 275
FblI GTMKAC 2 cut(s) 591, 618
FokI GGATG 5 cut(s) 296, 317, 494, 865, 990
FriOI GRGCYC 2 cut(s) 888, 1102
FspBI CTAG 1 cut(s) 911
GlaI GCGC 3 cut(s) 421, 933, 1092
GsuI CTGGAG 1 cut(s) 835
HaeII RGCGCY 1 cut(s) 935
HaeIII GGCC 2 cut(s) 770, 1075
HapII CCGG 5 cut(s) 680, 786, 921, 982, 994
HgaI GACGC 2 cut(s) 396, 1097
HhaI GCGC 3 cut(s) 422, 934, 1093
Hin1II CATG 4 cut(s) 259, 325, 962, 1080
Hin6I GCGC 3 cut(s) 420, 932, 1091
HinP1I GCGC 3 cut(s) 420, 932, 1091
HincII GTYRAC 1 cut(s) 619
HindII GTYRAC 1 cut(s) 619
HinfI GANTC 7 cut(s) 476, 492, 585, 599, 876, 1018, 1136
HpaII CCGG 5 cut(s) 680, 786, 921, 982, 994
HphI GGTGA 6 cut(s) 442, 706, 808, 836, 983, 1027
Hpy166II GTNNAC 4 cut(s) 193, 280, 592, 619
Hpy188I TCNGA 1 cut(s) 604
Hpy188III TCNNGA 4 cut(s) 256, 489, 806, 1140
Hpy8I GTNNAC 4 cut(s) 193, 280, 592, 619
Hpy99I CGWCG 8 cut(s) 200, 203, 374, 389, 476, 585, 623, 659
HpyAV CCTTC 6 cut(s) 186, 385, 448, 463, 478, 747
HpyCH4III ACNGT 2 cut(s) 190, 667
HpyCH4IV ACGT 5 cut(s) 282, 369, 483, 544, 752
HpyCH4V TGCA 6 cut(s) 398, 690, 856, 862, 1003, 1027
HpySE526I ACGT 5 cut(s) 282, 369, 483, 544, 752
Hsp92II CATG 4 cut(s) 259, 325, 962, 1080
HspAI GCGC 3 cut(s) 420, 932, 1091
KspI CCGCGG 1 cut(s) 316
Kzo9I GATC 6 cut(s) 258, 604, 798, 802, 808, 1108
LmnI GCTCC 5 cut(s) 151, 323, 518, 940, 1105
Lsp1109I GCAGC 8 cut(s) 94, 97, 100, 313, 382, 410, 846, 868
LweI GCATC 2 cut(s) 843, 1012
MaeI CTAG 1 cut(s) 911
MaeII ACGT 5 cut(s) 282, 369, 483, 544, 752
MaeIII GTNAC 2 cut(s) 773, 824
MalI GATC 6 cut(s) 260, 606, 800, 804, 810, 1110
MbiI CCGCTC 1 cut(s) 513
MboI GATC 6 cut(s) 258, 604, 798, 802, 808, 1108
MboII GAAGA 5 cut(s) 230, 233, 857, 877, 899
MhlI GDGCHC 4 cut(s) 665, 888, 945, 1102
MluCI AATT 1 cut(s) 997
MluI ACGCGT 1 cut(s) 405
MlyI GAGTC 6 cut(s) 470, 486, 593, 594, 1027, 1130
MmeI TCCRAC 2 cut(s) 104, 370
MslI CAYNNNNRTG 2 cut(s) 788, 1032
MspA1I CMGCKG 3 cut(s) 107, 315, 859
MspI CCGG 5 cut(s) 680, 786, 921, 982, 994
MspR9I CCNGG 4 cut(s) 680, 922, 983, 1008
MvaI CCWGG 1 cut(s) 1008
MvnI CGCG 6 cut(s) 315, 407, 420, 638, 836, 1091
NciI CCSGG 3 cut(s) 680, 922, 983
NcoI CCATGG 1 cut(s) 321
NdeII GATC 6 cut(s) 258, 604, 798, 802, 808, 1108
NlaIII CATG 4 cut(s) 259, 325, 962, 1080
NlaIV GGNNCC 3 cut(s) 319, 953, 1101
NmeAIII GCCGAG 1 cut(s) 630
NmuCI GTSAC 1 cut(s) 824
OliI CACNNNNGTG 1 cut(s) 788
PagI TCATGA 1 cut(s) 255
PceI AGGCCT 1 cut(s) 770
PcsI WCGNNNNNNNCGW 4 cut(s) 204, 480, 594, 663
PfeI GAWTC 1 cut(s) 876
Pfl23II CGTACG 1 cut(s) 577
PleI GAGTC 6 cut(s) 470, 486, 593, 593, 1026, 1130
PmaCI CACGTG 1 cut(s) 283
PmlI CACGTG 1 cut(s) 283
PpsI GAGTC 6 cut(s) 470, 486, 593, 593, 1026, 1130
Ppu21I YACGTR 2 cut(s) 283, 545
Psp124BI GAGCTC 1 cut(s) 888
Psp6I CCWGG 1 cut(s) 1006
PspCI CACGTG 1 cut(s) 283
PspGI CCWGG 1 cut(s) 1006
PspLI CGTACG 1 cut(s) 577
PspN4I GGNNCC 3 cut(s) 319, 953, 1101
PspPI GGNCC 1 cut(s) 729
PstI CTGCAG 2 cut(s) 400, 864
PvuII CAGCTG 1 cut(s) 859
RsaI GTAC 2 cut(s) 579, 686
RsaNI GTAC 2 cut(s) 578, 685
RseI CAYNNNNRTG 2 cut(s) 788, 1032
SacI GAGCTC 1 cut(s) 888
SacII CCGCGG 1 cut(s) 316
SalI GTCGAC 1 cut(s) 617
Sau3AI GATC 6 cut(s) 258, 604, 798, 802, 808, 1108
Sau96I GGNCC 1 cut(s) 729
ScaI AGTACT 1 cut(s) 686
SchI GAGTC 6 cut(s) 470, 486, 593, 594, 1027, 1130
ScrFI CCNGG 4 cut(s) 680, 922, 983, 1008
SduI GDGCHC 4 cut(s) 665, 888, 945, 1102
SfaNI GCATC 2 cut(s) 843, 1012
SfcI CTRYAG 2 cut(s) 396, 860
Sfr303I CCGCGG 1 cut(s) 316
SgrAI CRCCGGYG 1 cut(s) 785
SgrBI CCGCGG 1 cut(s) 316
SinI GGWCC 1 cut(s) 729
SmiMI CAYNNNNRTG 2 cut(s) 788, 1032
Sse9I AATT 1 cut(s) 997
SseBI AGGCCT 1 cut(s) 770
SspMI CTAG 1 cut(s) 911
SstI GAGCTC 1 cut(s) 888
StuI AGGCCT 1 cut(s) 770
StyD4I CCNGG 4 cut(s) 678, 920, 981, 1006
StyI CCWWGG 2 cut(s) 321, 519
TaaI ACNGT 2 cut(s) 190, 667
TaiI ACGT 5 cut(s) 285, 372, 486, 547, 755
TaqI TCGA 5 cut(s) 207, 471, 597, 618, 801
TaqII GACCGA 1 cut(s) 777
TasI AATT 1 cut(s) 997
TatI WGTACW 1 cut(s) 684
TauI GCSGC 7 cut(s) 119, 122, 125, 128, 318, 677, 901
TfiI GAWTC 1 cut(s) 876
TseFI GTSAC 1 cut(s) 824
TseI GCWGC 8 cut(s) 107, 110, 113, 326, 395, 398, 856, 859
Tsp45I GTSAC 1 cut(s) 824
TspDTI ATGAA 3 cut(s) 25, 231, 244
TspGWI ACGGA 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 729
XapI RAATTY 1 cut(s) 997
XmiI GTMKAC 2 cut(s) 591, 618
XspI CTAG 1 cut(s) 911
ZrmI AGTACT 1 cut(s) 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.