FvH4_2g40830

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010449
Physical Location & Seq
Reverse (-)
29018579 .. 29021033
2455 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g40830.t1

Sequence Viewer

Length: 651 bp
ATGCTGTGTAGAATGGTAGTGCCCAAGAAGAAGAAGACCGGCAAAGTGCCGGTGTATCTCAATGTCTACGATCTCACACCAATCAATGGCTACGCCTATTGGCTTGGCCTCGGCGTCTACCATTCCGGCGTGCAAGTACATGGGGTTGAATATGCTTTTGGGGCGCATGACCATGCCTCAACTGGGATCTTTGAAGTCGAACCAAAGAAATGCCCTGGTTTTGTATTCCGAAAATCCATTTTGATTGGAAGAACAGATTTAGGTCCCAAAGAGGTCCGTGCATTCATGGAGAAACTTGCAGAAGACTACTCTGGCAACACATACCATCTAATCACCAAGAACTGCAACCACTTCTGTAATGATGTGTGTCTCAAATTGACAGAGAGGACTATTCCTCGATGGGTTAACCGTCTCGCTCGACTTGGTTTGTTCTGCAATTGTGTTCTTCCGGCTGGCCTAAACGAAACTAAGGTTCGGCAAGTAAGATCAGATGGGGGGATATATGGAGACAAGAAGAAATTAAGAAGTCATTCAAGTAACAGCGCACCGGGGTCTGGAAGCAGAAGTTCTTCTAGACAAAGACATTGTCTTCCTCCATCTTCATCTTTGATCCATTCTACTTCAACCCCAGCATTGACTGTAAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

217

Amino Acids

23.97

Weight (kDa)

9.67

Isoelectric Point (pI)

36.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 17 - 151 1.6e-53 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 86
AccI GTMKAC 2 cut(s) 66, 117
AclWI GGATC 2 cut(s) 194, 604
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 1 cut(s) 138
AfiI CCNNNNNNNGG 3 cut(s) 86, 183, 554
AgsI TTSAA 4 cut(s) 149, 194, 534, 624
AjnI CCWGG 1 cut(s) 214
AjuI GAANNNNNNNTTGG 2 cut(s) 141, 173
AluBI AGCT 1 cut(s) 646
AluI AGCT 1 cut(s) 646
Alw26I GTCTC 3 cut(s) 374, 416, 501
AlwI GGATC 2 cut(s) 194, 604
AoxI GGCC 2 cut(s) 106, 454
ArsI GACNNNNNNTTYG 2 cut(s) 571, 603
Asp700I GAANNNNTTC 2 cut(s) 529, 568
AspLEI GCGC 2 cut(s) 166, 545
AspS9I GGNCC 2 cut(s) 263, 274
AsuC2I CCSGG 1 cut(s) 549
AsuHPI GGTGA 1 cut(s) 325
AvaII GGWCC 2 cut(s) 263, 274
BaeGI GKGCMC 1 cut(s) 24
BbsI GAAGAC 3 cut(s) 41, 309, 581
BccI CCATC 4 cut(s) 333, 393, 485, 604
BciT130I CCWGG 1 cut(s) 216
BcnI CCSGG 1 cut(s) 549
BcoDI GTCTC 3 cut(s) 374, 416, 501
BfaI CTAG 1 cut(s) 573
Bme1390I CCNGG 2 cut(s) 216, 549
Bme18I GGWCC 2 cut(s) 263, 274
BmgT120I GGNCC 2 cut(s) 263, 274
BmiI GGNNCC 1 cut(s) 265
BmrFI CCNGG 2 cut(s) 216, 549
BmrI ACTGGG 1 cut(s) 192
BmuI ACTGGG 1 cut(s) 192
BpiI GAAGAC 3 cut(s) 41, 309, 581
BpuMI CCSGG 1 cut(s) 549
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 3 cut(s) 109, 214, 548
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 183, 554
Bse118I RCCGGY 2 cut(s) 38, 49
Bse1I ACTGG 1 cut(s) 187
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 3 cut(s) 109, 214, 548
BseLI CCNNNNNNNGG 3 cut(s) 86, 183, 554
BseNI ACTGG 1 cut(s) 187
BseSI GKGCMC 1 cut(s) 24
BseYI CCCAGC 1 cut(s) 628
BshFI GGCC 2 cut(s) 108, 456
BsiSI CCGG 5 cut(s) 39, 50, 126, 449, 548
BslFI GGGAC 1 cut(s) 249
BslI CCNNNNNNNGG 3 cut(s) 86, 183, 554
BsmAI GTCTC 3 cut(s) 374, 416, 501
BsmBI CGTCTC 1 cut(s) 416
BsmFI GGGAC 1 cut(s) 249
BsmI GAATGC 1 cut(s) 281
BsnI GGCC 2 cut(s) 108, 456
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 4 cut(s) 70, 186, 485, 609
BspANI GGCC 2 cut(s) 108, 456
BspLI GGNNCC 1 cut(s) 265
BspPI GGATC 2 cut(s) 194, 604
BsrFI RCCGGY 2 cut(s) 38, 49
BsrI ACTGG 1 cut(s) 187
BssAI RCCGGY 2 cut(s) 38, 49
BssECI CCNNGG 3 cut(s) 109, 214, 548
BssMI GATC 4 cut(s) 70, 186, 485, 609
BssNI GRCGYC 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 2 cut(s) 410, 640
BstACI GRCGYC 1 cut(s) 114
BstC8I GCNNGC 2 cut(s) 131, 454
BstDEI CTNAG 1 cut(s) 468
BstHHI GCGC 2 cut(s) 166, 545
BstKTI GATC 4 cut(s) 73, 189, 488, 612
BstMAI GTCTC 3 cut(s) 374, 416, 501
BstMBI GATC 4 cut(s) 70, 186, 485, 609
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 1 cut(s) 216
BstSCI CCNGG 2 cut(s) 214, 547
BstSLI GKGCMC 1 cut(s) 24
BstV2I GAAGAC 3 cut(s) 41, 309, 581
BstX2I RGATCY 1 cut(s) 186
BstYI RGATCY 1 cut(s) 186
BsuRI GGCC 2 cut(s) 108, 456
Cac8I GCNNGC 2 cut(s) 131, 454
CfoI GCGC 2 cut(s) 166, 545
Cfr10I RCCGGY 2 cut(s) 38, 49
Cfr13I GGNCC 2 cut(s) 263, 274
CseI GACGC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 137
CviAII CATG 4 cut(s) 140, 167, 173, 286
CviJI RGCY 6 cut(s) 90, 103, 108, 452, 456, 646
CviKI_1 RGCY 6 cut(s) 90, 103, 108, 452, 456, 646
CviQI GTAC 1 cut(s) 137
DdeI CTNAG 1 cut(s) 468
DpnI GATC 4 cut(s) 72, 188, 487, 611
DpnII GATC 4 cut(s) 70, 186, 485, 609
Eco47I GGWCC 2 cut(s) 263, 274
EcoO109I RGGNCCY 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 214
Esp3I CGTCTC 1 cut(s) 416
FaeI CATG 4 cut(s) 143, 170, 176, 289
FaiI YATR 8 cut(s) 141, 153, 168, 174, 287, 322, 502, 504
FaqI GGGAC 1 cut(s) 249
FatI CATG 4 cut(s) 139, 166, 172, 285
FblI GTMKAC 2 cut(s) 66, 117
FspBI CTAG 1 cut(s) 573
GlaI GCGC 2 cut(s) 165, 544
GsaI CCCAGC 1 cut(s) 632
HaeIII GGCC 2 cut(s) 108, 456
HapII CCGG 5 cut(s) 39, 50, 126, 449, 548
HgaI GACGC 1 cut(s) 103
HhaI GCGC 2 cut(s) 166, 545
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 4 cut(s) 143, 170, 176, 289
Hin6I GCGC 2 cut(s) 164, 543
HinP1I GCGC 2 cut(s) 164, 543
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HindIII AAGCTT 1 cut(s) 644
HpaI GTTAAC 1 cut(s) 406
HpaII CCGG 5 cut(s) 39, 50, 126, 449, 548
HphI GGTGA 1 cut(s) 325
Hpy166II GTNNAC 3 cut(s) 67, 118, 406
Hpy188I TCNGA 2 cut(s) 230, 490
Hpy188III TCNNGA 2 cut(s) 555, 573
Hpy8I GTNNAC 3 cut(s) 67, 118, 406
HpyCH4III ACNGT 2 cut(s) 410, 640
HpyCH4V TGCA 5 cut(s) 133, 281, 299, 345, 435
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 1 cut(s) 468
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 4 cut(s) 143, 170, 176, 289
HspAI GCGC 2 cut(s) 164, 543
KspAI GTTAAC 1 cut(s) 406
Kzo9I GATC 4 cut(s) 70, 186, 485, 609
MaeI CTAG 1 cut(s) 573
MaeIII GTNAC 1 cut(s) 536
MalI GATC 4 cut(s) 72, 188, 487, 611
MboI GATC 4 cut(s) 70, 186, 485, 609
MfeI CAATTG 1 cut(s) 436
MflI RGATCY 1 cut(s) 186
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 3 cut(s) 374, 436, 518
MnlI CCTC 6 cut(s) 119, 187, 265, 378, 405, 603
MroXI GAANNNNTTC 2 cut(s) 529, 568
MseI TTAA 2 cut(s) 405, 521
MslI CAYNNNNRTG 1 cut(s) 171
MspI CCGG 5 cut(s) 39, 50, 126, 449, 548
MspR9I CCNGG 2 cut(s) 216, 549
MunI CAATTG 1 cut(s) 436
Mva1269I GAATGC 1 cut(s) 281
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 161
NciI CCSGG 1 cut(s) 549
NdeII GATC 4 cut(s) 70, 186, 485, 609
NlaIII CATG 4 cut(s) 143, 170, 176, 289
NlaIV GGNNCC 1 cut(s) 265
NmeAIII GCCGAG 1 cut(s) 90
PctI GAATGC 1 cut(s) 281
PdmI GAANNNNTTC 2 cut(s) 529, 568
PflFI GACNNNGTC 1 cut(s) 585
PflMI CCANNNNNTGG 1 cut(s) 86
PpuMI RGGWCCY 1 cut(s) 263
Psp5II RGGWCCY 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 214
PspFI CCCAGC 1 cut(s) 628
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 265
PspPI GGNCC 2 cut(s) 263, 274
PspPPI RGGWCCY 1 cut(s) 263
PsuI RGATCY 1 cut(s) 186
PsyI GACNNNGTC 1 cut(s) 585
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
RseI CAYNNNNRTG 1 cut(s) 171
SaqAI TTAA 2 cut(s) 405, 521
Sau3AI GATC 4 cut(s) 70, 186, 485, 609
Sau96I GGNCC 2 cut(s) 263, 274
ScrFI CCNGG 2 cut(s) 216, 549
SduI GDGCHC 1 cut(s) 24
SetI ASST 4 cut(s) 265, 276, 474, 648
SinI GGWCC 2 cut(s) 263, 274
SmiMI CAYNNNNRTG 1 cut(s) 171
Sse9I AATT 3 cut(s) 374, 436, 518
SspMI CTAG 1 cut(s) 573
StyD4I CCNGG 2 cut(s) 214, 547
TaaI ACNGT 2 cut(s) 410, 640
TaqI TCGA 3 cut(s) 198, 397, 418
TasI AATT 3 cut(s) 374, 436, 518
TatI WGTACW 1 cut(s) 136
Tru1I TTAA 2 cut(s) 405, 521
Tru9I TTAA 2 cut(s) 405, 521
TspDTI ATGAA 2 cut(s) 274, 591
TspGWI ACGGA 1 cut(s) 266
Tth111I GACNNNGTC 1 cut(s) 585
Van91I CCANNNNNTGG 1 cut(s) 86
VpaK11BI GGWCC 2 cut(s) 263, 274
XbaI TCTAGA 1 cut(s) 572
XcmI CCANNNNNNNNNTGG 1 cut(s) 179
XmiI GTMKAC 2 cut(s) 66, 117
XmnI GAANNNNTTC 2 cut(s) 529, 568
XspI CTAG 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.