Rh6DG404300

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0010449
Physical Location & Seq
Forward (+)
59214510 .. 59218351
3842 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG404300.1

Sequence Viewer

Length: 639 bp
ATGTATGTTCTTGGGAGGGAAATGGATTTCTGTAATAAAGTACTAGACTTGGTTATTTATTTCCTCACTCTCACATGTGAATCTAGTTTCTGTGTTTTTAGATTTTTGTGTTTATTTCTGTGTTCAGTACATGGCGTTGAATATGCTTTTGGAGCGCATGACCATGCAACAACTGGGATTTTTGAAGTTGAACCAAAGAAATGCCCTGGTTTTGTATTCCGAAAATCCATTCTGATAGGAAGAACAGATTTAGGTCCCAAAGAGGTCCGTGCATTCATGGAGAAACTCGCAGAAGACTACTCTGGAAACACATACCACCTCATCACCAAGAATTGCAACCACTTCTGTAATGATGTGTGCCTCAGATTGACAGAGAGGCCTATTCCTCGTTGGGTTAACCGTCTTGCTCGACTCGGTTTATTCTGCAATTGTGTTCTTCCGGCTGGCCTGAACGAAACTAGGGTTCGGCAAGTAAGATCAGATGGGGGGATTTATGGAGATAAGAAGAAATTGAGAAGCCATTCAAGTAATAGTGCACCCGGTTCTGGAGGCAGAAGTTCTAGACAAAGACATTGTCTTCCGCCATCTTCATCGTTGATCCATTCTACCTCAACCCCAGCTTTGACTGTAAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

212

Amino Acids

23.8

Weight (kDa)

9.14

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 42 - 148 1.1e-40 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 581
AclWI GGATC 1 cut(s) 592
AfaI GTAC 2 cut(s) 42, 129
AfiI CCNNNNNNNGG 1 cut(s) 545
AflIII ACRYGT 1 cut(s) 74
AgsI TTSAA 4 cut(s) 140, 185, 191, 525
AjnI CCWGG 1 cut(s) 205
AjuI GAANNNNNNNTTGG 2 cut(s) 132, 164
AluBI AGCT 2 cut(s) 620, 634
AluI AGCT 2 cut(s) 620, 634
Alw21I GWGCWC 1 cut(s) 538
Alw44I GTGCAC 1 cut(s) 534
AlwI GGATC 1 cut(s) 592
AoxI GGCC 2 cut(s) 377, 445
ApaLI GTGCAC 1 cut(s) 534
ArsI GACNNNNNNTTYG 2 cut(s) 559, 591
Asp700I GAANNNNTTC 1 cut(s) 520
AspLEI GCGC 1 cut(s) 157
AspS9I GGNCC 2 cut(s) 254, 265
AsuC2I CCSGG 1 cut(s) 540
AsuHPI GGTGA 1 cut(s) 316
AvaII GGWCC 2 cut(s) 254, 265
BaeGI GKGCMC 1 cut(s) 538
BbsI GAAGAC 2 cut(s) 300, 569
Bbv12I GWGCWC 1 cut(s) 538
BccI CCATC 2 cut(s) 476, 592
BciT130I CCWGG 1 cut(s) 207
BcnI CCSGG 1 cut(s) 540
BfaI CTAG 4 cut(s) 44, 84, 459, 561
BmcAI AGTACT 1 cut(s) 42
Bme1390I CCNGG 2 cut(s) 207, 540
Bme18I GGWCC 2 cut(s) 254, 265
BmgT120I GGNCC 2 cut(s) 254, 265
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 2 cut(s) 207, 540
BmrI ACTGGG 1 cut(s) 183
BmuI ACTGGG 1 cut(s) 183
BpiI GAAGAC 2 cut(s) 300, 569
BpmI CTGGAG 1 cut(s) 567
BpuMI CCSGG 1 cut(s) 540
BsaJI CCNNGG 1 cut(s) 205
Bsc4I CCNNNNNNNGG 1 cut(s) 545
Bse1I ACTGG 1 cut(s) 178
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 205
BseLI CCNNNNNNNGG 1 cut(s) 545
BseMII CTCAG 1 cut(s) 376
BseNI ACTGG 1 cut(s) 178
BseSI GKGCMC 1 cut(s) 538
BseYI CCCAGC 1 cut(s) 616
BshFI GGCC 2 cut(s) 379, 447
BsiHKAI GWGCWC 1 cut(s) 538
BsiSI CCGG 2 cut(s) 440, 540
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 545
BsmFI GGGAC 1 cut(s) 240
BsmI GAATGC 1 cut(s) 272
BsnI GGCC 2 cut(s) 379, 447
Bsp1286I GDGCHC 1 cut(s) 538
Bsp143I GATC 2 cut(s) 476, 597
BspACI CCGC 1 cut(s) 581
BspANI GGCC 2 cut(s) 379, 447
BspCNI CTCAG 1 cut(s) 375
BspLI GGNNCC 1 cut(s) 256
BspPI GGATC 1 cut(s) 592
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 2 cut(s) 476, 597
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 401, 628
BstC8I GCNNGC 1 cut(s) 445
BstDEI CTNAG 1 cut(s) 362
BstHHI GCGC 1 cut(s) 157
BstKTI GATC 2 cut(s) 479, 600
BstMBI GATC 2 cut(s) 476, 597
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 78
BstSCI CCNGG 2 cut(s) 205, 538
BstSLI GKGCMC 1 cut(s) 538
BstV2I GAAGAC 2 cut(s) 300, 569
BsuRI GGCC 2 cut(s) 379, 447
Cac8I GCNNGC 1 cut(s) 445
CfoI GCGC 1 cut(s) 157
Cfr13I GGNCC 2 cut(s) 254, 265
Csp6I GTAC 2 cut(s) 41, 128
CviAII CATG 5 cut(s) 75, 131, 158, 164, 277
CviJI RGCY 6 cut(s) 379, 443, 447, 519, 620, 634
CviKI_1 RGCY 6 cut(s) 379, 443, 447, 519, 620, 634
CviQI GTAC 2 cut(s) 41, 128
DdeI CTNAG 1 cut(s) 362
DpnI GATC 2 cut(s) 478, 599
DpnII GATC 2 cut(s) 476, 597
EciI GGCGGA 1 cut(s) 570
Eco147I AGGCCT 1 cut(s) 379
Eco47I GGWCC 2 cut(s) 254, 265
EcoO109I RGGNCCY 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 205
FaeI CATG 5 cut(s) 78, 134, 161, 167, 280
FaiI YATR 9 cut(s) 6, 76, 132, 144, 159, 165, 278, 313, 495
FaqI GGGAC 1 cut(s) 240
FatI CATG 5 cut(s) 74, 130, 157, 163, 276
FspBI CTAG 4 cut(s) 44, 84, 459, 561
GlaI GCGC 1 cut(s) 156
GsaI CCCAGC 1 cut(s) 620
GsuI CTGGAG 1 cut(s) 567
HaeIII GGCC 2 cut(s) 379, 447
HapII CCGG 2 cut(s) 440, 540
HhaI GCGC 1 cut(s) 157
Hin1II CATG 5 cut(s) 78, 134, 161, 167, 280
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HindIII AAGCTT 1 cut(s) 632
HinfI GANTC 2 cut(s) 80, 411
HpaI GTTAAC 1 cut(s) 397
HpaII CCGG 2 cut(s) 440, 540
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 2 cut(s) 397, 536
Hpy188I TCNGA 4 cut(s) 221, 234, 365, 481
Hpy188III TCNNGA 3 cut(s) 303, 546, 561
Hpy8I GTNNAC 2 cut(s) 397, 536
HpyCH4III ACNGT 2 cut(s) 401, 628
HpyCH4V TGCA 5 cut(s) 167, 272, 336, 426, 536
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 1 cut(s) 362
Hsp92II CATG 5 cut(s) 78, 134, 161, 167, 280
HspAI GCGC 1 cut(s) 155
KspAI GTTAAC 1 cut(s) 397
Kzo9I GATC 2 cut(s) 476, 597
LmnI GCTCC 1 cut(s) 152
MaeI CTAG 4 cut(s) 44, 84, 459, 561
MalI GATC 2 cut(s) 478, 599
MboI GATC 2 cut(s) 476, 597
MboII GAAGA 6 cut(s) 252, 305, 428, 517, 569, 579
MfeI CAATTG 1 cut(s) 427
MhlI GDGCHC 1 cut(s) 538
MluCI AATT 3 cut(s) 331, 427, 509
MlyI GAGTC 1 cut(s) 405
MnlI CCTC 9 cut(s) 9, 74, 256, 329, 369, 371, 396, 542, 619
MroXI GAANNNNTTC 1 cut(s) 520
MseI TTAA 1 cut(s) 396
MslI CAYNNNNRTG 1 cut(s) 162
MspI CCGG 2 cut(s) 440, 540
MspR9I CCNGG 2 cut(s) 207, 540
MunI CAATTG 1 cut(s) 427
Mva1269I GAATGC 1 cut(s) 272
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 152
NciI CCSGG 1 cut(s) 540
NdeII GATC 2 cut(s) 476, 597
NlaIII CATG 5 cut(s) 78, 134, 161, 167, 280
NlaIV GGNNCC 1 cut(s) 256
NspI RCATGY 1 cut(s) 78
PceI AGGCCT 1 cut(s) 379
PciI ACATGT 1 cut(s) 74
PctI GAATGC 1 cut(s) 272
PdmI GAANNNNTTC 1 cut(s) 520
PfeI GAWTC 1 cut(s) 80
PflFI GACNNNGTC 1 cut(s) 573
PleI GAGTC 1 cut(s) 405
PpsI GAGTC 1 cut(s) 405
PpuMI RGGWCCY 1 cut(s) 254
PscI ACATGT 1 cut(s) 74
Psp5II RGGWCCY 1 cut(s) 254
Psp6I CCWGG 1 cut(s) 205
PspFI CCCAGC 1 cut(s) 616
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 2 cut(s) 254, 265
PspPPI RGGWCCY 1 cut(s) 254
PsyI GACNNNGTC 1 cut(s) 573
RsaI GTAC 2 cut(s) 42, 129
RsaNI GTAC 2 cut(s) 41, 128
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 1 cut(s) 396
Sau3AI GATC 2 cut(s) 476, 597
Sau96I GGNCC 2 cut(s) 254, 265
ScaI AGTACT 1 cut(s) 42
SchI GAGTC 1 cut(s) 405
ScrFI CCNGG 2 cut(s) 207, 540
SduI GDGCHC 1 cut(s) 538
SetI ASST 6 cut(s) 256, 267, 321, 611, 622, 636
SinI GGWCC 2 cut(s) 254, 265
SmiMI CAYNNNNRTG 1 cut(s) 162
Sse9I AATT 3 cut(s) 331, 427, 509
SseBI AGGCCT 1 cut(s) 379
SsiI CCGC 1 cut(s) 581
SspMI CTAG 4 cut(s) 44, 84, 459, 561
StuI AGGCCT 1 cut(s) 379
StyD4I CCNGG 2 cut(s) 205, 538
TaaI ACNGT 2 cut(s) 401, 628
TaqI TCGA 1 cut(s) 409
TasI AATT 3 cut(s) 331, 427, 509
TatI WGTACW 2 cut(s) 40, 127
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TspDTI ATGAA 2 cut(s) 265, 579
TspGWI ACGGA 1 cut(s) 257
Tth111I GACNNNGTC 1 cut(s) 573
VneI GTGCAC 1 cut(s) 534
VpaK11BI GGWCC 2 cut(s) 254, 265
XbaI TCTAGA 1 cut(s) 560
XceI RCATGY 1 cut(s) 78
XcmI CCANNNNNNNNNTGG 1 cut(s) 170
XmnI GAANNNNTTC 1 cut(s) 520
XspI CTAG 4 cut(s) 44, 84, 459, 561
ZrmI AGTACT 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.