Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010449

Physical Location & Seq

Genomic Coordinates Reverse (-)

44418427 .. 44418879

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0292000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTCGACTGAAAAGAAGATGATAGTCCTACAGAGCTCGGACAATGAGACTTTTCATATTGAAGAGGCGGTGGCCCTCCAATCCCAGATGATCAAGCACATGGTGGAGGACGACTGTGCCAACAACACCATTCCTTTACCTAATGTCACCGGAGTTATCCTCGCGAAGGTGCTCGAGTATTGCCAGAAGCACGTGGAGGAGGGCGGCGAGGAGGCTCTCAGGGCATGGGACGCAGATTTTGTCGACTTCGACACGAACACCCTCTTTGACGTCATCATGGCAGCCAACTATTTGAACATCAAGGGCTTGCTGGAGCTGACCGCCCAGAAAACCGCGGACTTGATCAAGGGAAAGACTCCTGAAGAGATTCGCAAGACTTTCAACATCAAGAACGACTTCCCTCCTGGGGAAGAAGAAGAGATTCGGAGTAAGAACTCATGGGCTTTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C97

Protein Analysis

150

Amino Acids

16.99

Weight (kDa)

4.61

Isoelectric Point (pI)

59.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	6 - 65	5e-28	Skp1 family, tetramerisation domain
Skp1	PF01466	101 - 148	3.3e-24	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25170 AT5G25170
fragaria_vesca	FvH4_2g40830
malus_domestica	MD05G1207500.v1.1 MD08G1059400.v1.1 MD15G1036900.v1.1
prunus_persica	Prupe.1G391000_v2.0.a1 Prupe.1G391000_v2.0.a1 Prupe.1G391000_v2.0.a1
pyrus_communis	pycom08g04950 pycom15g03420
rosa_chinensis	RchiOBHm_Chr6g0299741
rosa_laevigata	RLG00000011392
rosa_multiflora	Rmu_sc0002895.1_g000018
rosa_roxburghii	Rroxscaffold_7G00168400
rosa_rugosa	Rorug06G0292000
rosa_samantha	Rh6AG402800 Rh6BG411400 Rh6CG417500 Rh6DG404300
rosa_wichuraiana	Rw6G035260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	273
AccI	GTMKAC	2 cut(s)	5, 243
AccII	CGCG	2 cut(s)	164, 335
AciI	CCGC	5 cut(s)	68, 204, 321, 333, 335
AcuI	CTGAAG	1 cut(s)	381
AcvI	CACGTG	1 cut(s)	193
AcyI	GRCGYC	1 cut(s)	270
AdeI	CACNNNGTG	1 cut(s)	103
AfiI	CCNNNNNNNGG	2 cut(s)	166, 406
AgsI	TTSAA	3 cut(s)	62, 295, 382
AjnI	CCWGG	1 cut(s)	403
AluBI	AGCT	2 cut(s)	36, 316
AluI	AGCT	2 cut(s)	36, 316
Alw21I	GWGCWC	2 cut(s)	38, 174
Alw26I	GTCTC	1 cut(s)	41
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	1 cut(s)	281
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
Asp700I	GAANNNNTTC	3 cut(s)	366, 395, 420
AspS9I	GGNCC	1 cut(s)	73
AsuHPI	GGTGA	1 cut(s)	139
AvaI	CYCGRG	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	38
BbrPI	CACGTG	1 cut(s)	193
Bbv12I	GWGCWC	2 cut(s)	38, 174
BbvI	GCAGC	1 cut(s)	293
BciT130I	CCWGG	1 cut(s)	405
BclI	TGATCA	2 cut(s)	90, 342
BcoDI	GTCTC	1 cut(s)	41
BfmI	CTRYAG	1 cut(s)	29
BisI	GCNGC	2 cut(s)	205, 282
BlsI	GCNGC	2 cut(s)	206, 283
Bme1390I	CCNGG	1 cut(s)	405
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	405
BplI	GAGNNNNNCTC	2 cut(s)	144, 176
BpmI	CTGGAG	1 cut(s)	332
BsaAI	YACGTR	1 cut(s)	193
BsaHI	GRCGYC	1 cut(s)	270
BsaJI	CCNNGG	2 cut(s)	333, 404
BsaWI	WCCGGW	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 406
BseBI	CCWGG	1 cut(s)	405
BseDI	CCNNGG	2 cut(s)	333, 404
BseLI	CCNNNNNNNGG	2 cut(s)	166, 406
BseMII	CTCAG	1 cut(s)	232
BseRI	GAGGAG	2 cut(s)	212, 224
BseXI	GCAGC	1 cut(s)	293
Bsh1236I	CGCG	2 cut(s)	164, 335
BshFI	GGCC	1 cut(s)	74
BsiHKAI	GWGCWC	2 cut(s)	38, 174
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	166, 406
BsmAI	GTCTC	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	74
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	2 cut(s)	38, 174
Bsp143I	GATC	2 cut(s)	90, 342
Bsp68I	TCGCGA	1 cut(s)	164
BspACI	CCGC	5 cut(s)	68, 204, 321, 333, 335
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	231
BspFNI	CGCG	2 cut(s)	164, 335
BssECI	CCNNGG	2 cut(s)	333, 404
BssMI	GATC	2 cut(s)	90, 342
BssNI	GRCGYC	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	1 cut(s)	116
Bst6I	CTCTTC	3 cut(s)	57, 357, 411
BstACI	GRCGYC	1 cut(s)	270
BstBAI	YACGTR	1 cut(s)	193
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	1 cut(s)	218
BstDSI	CCRYGG	1 cut(s)	333
BstENI	CCTNNNNNAGG	1 cut(s)	164
BstFNI	CGCG	2 cut(s)	164, 335
BstKTI	GATC	2 cut(s)	93, 345
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	2 cut(s)	90, 342
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 230
BstNI	CCWGG	1 cut(s)	405
BstSCI	CCNGG	1 cut(s)	403
BstSFI	CTRYAG	1 cut(s)	29
BstUI	CGCG	2 cut(s)	164, 335
BstV1I	GCAGC	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	74
BtgI	CCRYGG	1 cut(s)	333
BtuMI	TCGCGA	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	73
Cfr42I	CCGCGG	1 cut(s)	336
CseI	GACGC	1 cut(s)	239
CviAII	CATG	4 cut(s)	100, 225, 277, 438
CviJI	RGCY	7 cut(s)	36, 74, 215, 284, 306, 316, 443
CviKI_1	RGCY	7 cut(s)	36, 74, 215, 284, 306, 316, 443
DdeI	CTNAG	1 cut(s)	218
DpnI	GATC	2 cut(s)	92, 344
DpnII	GATC	2 cut(s)	90, 342
DraIII	CACNNNGTG	1 cut(s)	103
Eam1104I	CTCTTC	3 cut(s)	57, 357, 411
EarI	CTCTTC	3 cut(s)	57, 357, 411
Ecl136II	GAGCTC	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	38
Eco53kI	GAGCTC	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	381
Eco72I	CACGTG	1 cut(s)	193
Eco88I	CYCGRG	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	36
EcoNI	CCTNNNNNAGG	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	403
EcoT38I	GRGCYC	1 cut(s)	38
FaeI	CATG	4 cut(s)	103, 228, 280, 441
FaiI	YATR	5 cut(s)	57, 101, 226, 278, 439
FalI	AAGNNNNNCTT	2 cut(s)	380, 412
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	4 cut(s)	99, 224, 276, 437
FbaI	TGATCA	2 cut(s)	90, 342
FblI	GTMKAC	2 cut(s)	5, 243
Fnu4HI	GCNGC	2 cut(s)	205, 282
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	2 cut(s)	205, 282
GluI	GCNGC	2 cut(s)	205, 282
GsuI	CTGGAG	1 cut(s)	332
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	1 cut(s)	150
HgaI	GACGC	1 cut(s)	239
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	4 cut(s)	103, 228, 280, 441
HincII	GTYRAC	2 cut(s)	6, 244
HindII	GTYRAC	2 cut(s)	6, 244
HinfI	GANTC	3 cut(s)	355, 367, 421
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	2 cut(s)	6, 244
Hpy188I	TCNGA	2 cut(s)	40, 426
Hpy188III	TCNNGA	3 cut(s)	163, 359, 388
Hpy8I	GTNNAC	2 cut(s)	6, 244
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4IV	ACGT	2 cut(s)	192, 270
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 230
HpyF3I	CTNAG	1 cut(s)	218
HpySE526I	ACGT	2 cut(s)	192, 270
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	4 cut(s)	103, 228, 280, 441
Ksp22I	TGATCA	2 cut(s)	90, 342
KspI	CCGCGG	1 cut(s)	336
Kzo9I	GATC	2 cut(s)	90, 342
LmnI	GCTCC	1 cut(s)	313
LpnPI	CCDG	9 cut(s)	98, 163, 197, 205, 296, 338, 372, 390, 417
Lsp1109I	GCAGC	1 cut(s)	293
MaeII	ACGT	2 cut(s)	192, 270
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	2 cut(s)	92, 344
MboI	GATC	2 cut(s)	90, 342
MboII	GAAGA	6 cut(s)	28, 74, 374, 422, 425, 428
MhlI	GDGCHC	2 cut(s)	38, 174
MlyI	GAGTC	1 cut(s)	349
MroXI	GAANNNNTTC	3 cut(s)	366, 395, 420
MspA1I	CMGCKG	1 cut(s)	335
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	405
MvnI	CGCG	2 cut(s)	164, 335
MwoI	GCNNNNNNNGC	2 cut(s)	221, 230
NdeII	GATC	2 cut(s)	90, 342
NlaIII	CATG	4 cut(s)	103, 228, 280, 441
NmuCI	GTSAC	1 cut(s)	145
NruI	TCGCGA	1 cut(s)	164
PaeR7I	CTCGAG	1 cut(s)	173
PdmI	GAANNNNTTC	3 cut(s)	366, 395, 420
PfeI	GAWTC	2 cut(s)	367, 421
PkrI	GCNGC	2 cut(s)	206, 283
PleI	GAGTC	1 cut(s)	349
PmaCI	CACGTG	1 cut(s)	193
PmlI	CACGTG	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	349
Ppu21I	YACGTR	1 cut(s)	193
Psp124BI	GAGCTC	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	403
PspCI	CACGTG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	403
PspPI	GGNCC	1 cut(s)	73
PspXI	VCTCGAGB	1 cut(s)	173
RruI	TCGCGA	1 cut(s)	164
SacI	GAGCTC	1 cut(s)	38
SacII	CCGCGG	1 cut(s)	336
SalI	GTCGAC	2 cut(s)	4, 242
SatI	GCNGC	2 cut(s)	205, 282
Sau3AI	GATC	2 cut(s)	90, 342
Sau96I	GGNCC	1 cut(s)	73
SchI	GAGTC	1 cut(s)	349
ScrFI	CCNGG	1 cut(s)	405
SduI	GDGCHC	2 cut(s)	38, 174
SetI	ASST	6 cut(s)	38, 142, 171, 195, 273, 318
SfcI	CTRYAG	1 cut(s)	29
Sfr274I	CTCGAG	1 cut(s)	173
Sfr303I	CCGCGG	1 cut(s)	336
SgrBI	CCGCGG	1 cut(s)	336
SlaI	CTCGAG	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SsiI	CCGC	5 cut(s)	68, 204, 321, 333, 335
SstI	GAGCTC	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	403
TaaI	ACNGT	1 cut(s)	116
TaiI	ACGT	2 cut(s)	195, 273
TaqI	TCGA	4 cut(s)	5, 174, 243, 249
TauI	GCSGC	1 cut(s)	207
TfiI	GAWTC	2 cut(s)	367, 421
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	1 cut(s)	44
XagI	CCTNNNNNAGG	1 cut(s)	164
XhoI	CTCGAG	1 cut(s)	173
XmiI	GTMKAC	2 cut(s)	5, 243
XmnI	GAANNNNTTC	3 cut(s)	366, 395, 420
ZraI	GACGTC	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.