Prupe.1G391000_v2.0.a1

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010449
Physical Location & Seq
Reverse (-)
34856718 .. 34859237
2520 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G391000.1

Sequence Viewer

Length: 690 bp
ATGCTGTGTAGGATGGTGTTGGTGCCCAGGAAGAAGAAGATTGGGAAAGTGCCTGTTTATCTGAATGTATACGATCTTACTCCGATCAATGGCTACGCGTATTGGCTCGGCCTTGGGGTCTACCATTCCGGTGTACAAGTACATGGTGTTGAATATGCTTTTGGAGCGCATGACCATGCAACGACTGGGATTTTTGAAGTGGAACCAAAACAATGTCCTGGCTTCGTATTCAGAAAATCAATTTTGATCGGAAGAACAGATTTAGGCCCCAAGGAGGTCCGCGCATTTATGGAGAAACTTGCAGAAGAGTACTCTGGAAACACATACCATCTGATCACCAAGAACTGCAACCACTTCTGTAATGATGTGTGTACCAGATTGACGGGGAAGCCTATTCCTCGCTGGGTCAACCGTCTTGCCCGACTTGGTTTTTTCTGCAATTGTGTTCTTCCAGCTGGTTTGAATGAAACTAAAGTTCGGCAAGTAAAATCAGATGGGGTTTACAGTGGGGATAAGAAGAAATTGAGGAGCCTTTCAACTAATTGTGCATCCTCAAATCCTCGGCCCTCTTCTTTACAACCCTCCAGTGGGGGTTCTGCAGGCAGAAGTAGTAGACAAAGACACTGTGTTCCTCCATCTTCCTCCTTGATCCATTCTTCATCAACCTCGGCCTTGACTGTAAAGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

230

Amino Acids

25.22

Weight (kDa)

9.71

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 22
AccI GTMKAC 3 cut(s) 69, 120, 613
AccII CGCG 2 cut(s) 98, 282
AciI CCGC 1 cut(s) 280
AclWI GGATC 1 cut(s) 643
AfaI GTAC 4 cut(s) 135, 141, 311, 373
AfiI CCNNNNNNNGG 4 cut(s) 89, 274, 587, 588
AflIII ACRYGT 1 cut(s) 96
AgsI TTSAA 4 cut(s) 152, 197, 463, 537
AjnI CCWGG 2 cut(s) 26, 217
AjuI GAANNNNNNNTTGG 2 cut(s) 144, 176
AluBI AGCT 1 cut(s) 455
AluI AGCT 1 cut(s) 455
AlwI GGATC 1 cut(s) 643
AoxI GGCC 4 cut(s) 109, 265, 563, 669
AspLEI GCGC 2 cut(s) 169, 284
AspS9I GGNCC 3 cut(s) 266, 277, 564
AsuHPI GGTGA 1 cut(s) 328
AvaII GGWCC 1 cut(s) 277
BaeGI GKGCMC 1 cut(s) 27
BanI GGYRCC 1 cut(s) 22
BccI CCATC 4 cut(s) 7, 336, 488, 643
BciT130I CCWGG 2 cut(s) 28, 219
BclI TGATCA 1 cut(s) 333
BfmI CTRYAG 1 cut(s) 597
BmcAI AGTACT 1 cut(s) 311
Bme1390I CCNGG 2 cut(s) 28, 219
Bme18I GGWCC 1 cut(s) 277
BmgT120I GGNCC 3 cut(s) 266, 277, 564
BmiI GGNNCC 4 cut(s) 24, 204, 268, 530
BmrFI CCNGG 2 cut(s) 28, 219
BmrI ACTGGG 1 cut(s) 195
BmsI GCATC 1 cut(s) 557
BmuI ACTGGG 1 cut(s) 195
BpmI CTGGAG 1 cut(s) 568
BsaJI CCNNGG 5 cut(s) 26, 112, 270, 560, 666
BsaWI WCCGGW 1 cut(s) 128
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 274, 587, 588
Bse1I ACTGG 2 cut(s) 190, 585
BseBI CCWGG 2 cut(s) 28, 219
BseDI CCNNGG 5 cut(s) 26, 112, 270, 560, 666
BseGI GGATG 2 cut(s) 18, 548
BseLI CCNNNNNNNGG 4 cut(s) 89, 274, 587, 588
BseNI ACTGG 2 cut(s) 190, 585
BseRI GAGGAG 1 cut(s) 541
BseSI GKGCMC 1 cut(s) 27
BseYI CCCAGC 1 cut(s) 402
Bsh1236I CGCG 2 cut(s) 98, 282
BshFI GGCC 4 cut(s) 111, 267, 565, 671
BshNI GGYRCC 1 cut(s) 22
BsiSI CCGG 1 cut(s) 129
BslI CCNNNNNNNGG 4 cut(s) 89, 274, 587, 588
BsnI GGCC 4 cut(s) 111, 267, 565, 671
Bsp1286I GDGCHC 1 cut(s) 27
Bsp1407I TGTACA 1 cut(s) 133
Bsp143I GATC 5 cut(s) 73, 84, 246, 333, 648
BspACI CCGC 1 cut(s) 280
BspANI GGCC 4 cut(s) 111, 267, 565, 671
BspFNI CGCG 2 cut(s) 98, 282
BspLI GGNNCC 4 cut(s) 24, 204, 268, 530
BspMAI CTGCAG 1 cut(s) 601
BspPI GGATC 1 cut(s) 643
BspT107I GGYRCC 1 cut(s) 22
BsrGI TGTACA 1 cut(s) 133
BsrI ACTGG 2 cut(s) 190, 585
BssECI CCNNGG 5 cut(s) 26, 112, 270, 560, 666
BssMI GATC 5 cut(s) 73, 84, 246, 333, 648
BssNAI GTATAC 1 cut(s) 70
BssT1I CCWWGG 2 cut(s) 112, 270
Bst1107I GTATAC 1 cut(s) 70
Bst2UI CCWGG 2 cut(s) 28, 219
Bst4CI ACNGT 4 cut(s) 413, 506, 626, 679
Bst6I CTCTTC 2 cut(s) 300, 574
BstAUI TGTACA 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 601
BstF5I GGATG 2 cut(s) 18, 548
BstFNI CGCG 2 cut(s) 98, 282
BstHHI GCGC 2 cut(s) 169, 284
BstKTI GATC 5 cut(s) 76, 87, 249, 336, 651
BstMBI GATC 5 cut(s) 73, 84, 246, 333, 648
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNI CCWGG 2 cut(s) 28, 219
BstSCI CCNGG 2 cut(s) 26, 217
BstSFI CTRYAG 1 cut(s) 597
BstSLI GKGCMC 1 cut(s) 27
BstUI CGCG 2 cut(s) 98, 282
BstZ17I GTATAC 1 cut(s) 70
BsuRI GGCC 4 cut(s) 111, 267, 565, 671
BtsCI GGATG 2 cut(s) 18, 548
BtsIMutI CAGTG 3 cut(s) 511, 592, 622
Cac8I GCNNGC 1 cut(s) 601
CfoI GCGC 2 cut(s) 169, 284
Cfr13I GGNCC 3 cut(s) 266, 277, 564
Csp6I GTAC 4 cut(s) 134, 140, 310, 372
CviAII CATG 3 cut(s) 143, 170, 176
CviQI GTAC 4 cut(s) 134, 140, 310, 372
DpnI GATC 5 cut(s) 75, 86, 248, 335, 650
DpnII GATC 5 cut(s) 73, 84, 246, 333, 648
Eam1104I CTCTTC 2 cut(s) 300, 574
EarI CTCTTC 2 cut(s) 300, 574
Eco130I CCWWGG 2 cut(s) 112, 270
Eco47I GGWCC 1 cut(s) 277
EcoO109I RGGNCCY 1 cut(s) 266
EcoRII CCWGG 2 cut(s) 26, 217
EcoT14I CCWWGG 2 cut(s) 112, 270
ErhI CCWWGG 2 cut(s) 112, 270
FaeI CATG 3 cut(s) 146, 173, 179
FaiI YATR 7 cut(s) 70, 144, 156, 171, 177, 290, 325
FatI CATG 3 cut(s) 142, 169, 175
FbaI TGATCA 1 cut(s) 333
FblI GTMKAC 3 cut(s) 69, 120, 613
FokI GGATG 2 cut(s) 25, 535
GlaI GCGC 2 cut(s) 168, 283
GsaI CCCAGC 1 cut(s) 406
GsuI CTGGAG 1 cut(s) 568
HaeIII GGCC 4 cut(s) 111, 267, 565, 671
HapII CCGG 1 cut(s) 129
HhaI GCGC 2 cut(s) 169, 284
Hin1II CATG 3 cut(s) 146, 173, 179
Hin6I GCGC 2 cut(s) 167, 282
HinP1I GCGC 2 cut(s) 167, 282
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HpaII CCGG 1 cut(s) 129
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 7 cut(s) 70, 121, 134, 372, 409, 502, 614
Hpy188I TCNGA 6 cut(s) 63, 84, 233, 251, 333, 493
Hpy188III TCNNGA 1 cut(s) 315
Hpy8I GTNNAC 7 cut(s) 70, 121, 134, 372, 409, 502, 614
HpyCH4III ACNGT 4 cut(s) 413, 506, 626, 679
HpyCH4V TGCA 6 cut(s) 179, 302, 348, 438, 548, 599
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
Hsp92II CATG 3 cut(s) 146, 173, 179
HspAI GCGC 2 cut(s) 167, 282
Ksp22I TGATCA 1 cut(s) 333
Kzo9I GATC 5 cut(s) 73, 84, 246, 333, 648
LmnI GCTCC 2 cut(s) 164, 528
LweI GCATC 1 cut(s) 557
MalI GATC 5 cut(s) 75, 86, 248, 335, 650
MboI GATC 5 cut(s) 73, 84, 246, 333, 648
MfeI CAATTG 1 cut(s) 439
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 4 cut(s) 240, 439, 521, 541
MluI ACGCGT 1 cut(s) 96
MslI CAYNNNNRTG 2 cut(s) 129, 174
MspA1I CMGCKG 1 cut(s) 455
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 2 cut(s) 28, 219
MunI CAATTG 1 cut(s) 439
MvaI CCWGG 2 cut(s) 28, 219
MvnI CGCG 2 cut(s) 98, 282
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeII GATC 5 cut(s) 73, 84, 246, 333, 648
NlaIII CATG 3 cut(s) 146, 173, 179
NlaIV GGNNCC 4 cut(s) 24, 204, 268, 530
NmeAIII GCCGAG 3 cut(s) 87, 541, 647
Psp6I CCWGG 2 cut(s) 26, 217
PspFI CCCAGC 1 cut(s) 402
PspGI CCWGG 2 cut(s) 26, 217
PspN4I GGNNCC 4 cut(s) 24, 204, 268, 530
PspPI GGNCC 3 cut(s) 266, 277, 564
PstI CTGCAG 1 cut(s) 601
PvuII CAGCTG 1 cut(s) 455
RsaI GTAC 4 cut(s) 135, 141, 311, 373
RsaNI GTAC 4 cut(s) 134, 140, 310, 372
RseI CAYNNNNRTG 2 cut(s) 129, 174
Sau3AI GATC 5 cut(s) 73, 84, 246, 333, 648
Sau96I GGNCC 3 cut(s) 266, 277, 564
ScaI AGTACT 1 cut(s) 311
ScrFI CCNGG 2 cut(s) 28, 219
SduI GDGCHC 1 cut(s) 27
SetI ASST 4 cut(s) 279, 457, 668, 687
SfaNI GCATC 1 cut(s) 557
SfcI CTRYAG 1 cut(s) 597
SinI GGWCC 1 cut(s) 277
SmiMI CAYNNNNRTG 2 cut(s) 129, 174
Sse9I AATT 4 cut(s) 240, 439, 521, 541
SsiI CCGC 1 cut(s) 280
StyD4I CCNGG 2 cut(s) 26, 217
StyI CCWWGG 2 cut(s) 112, 270
TaaI ACNGT 4 cut(s) 413, 506, 626, 679
TasI AATT 4 cut(s) 240, 439, 521, 541
TatI WGTACW 3 cut(s) 133, 139, 309
TscAI CASTG 3 cut(s) 511, 592, 629
TspDTI ATGAA 2 cut(s) 480, 648
TspRI CASTG 3 cut(s) 511, 592, 629
VpaK11BI GGWCC 1 cut(s) 277
XcmI CCANNNNNNNNNTGG 1 cut(s) 182
XmiI GTMKAC 3 cut(s) 69, 120, 613
ZrmI AGTACT 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.