Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002895.1

Orthogroup ID

OG0010449

Physical Location & Seq

Genomic Coordinates Forward (+)

80456 .. 81915

Gene Structure 1460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002895.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atggtgttggtgcccaagaagaagaagactggcaaagttccggtgtatctcaatgtctacgatctcacaccaatcaatggctacgcctattggcttggccttggtgtctaccattccggcgtgcaagtacatggcgttgaatatgcttttggagcgcatgaccatgcaacaactgggatttttgaagttgaaccaaagaaatgccctggttttgtattccgaaaatccattctgataggaagaacagatttaggtcccaaagaggtccgtgcattcatggagaaactcgcagaagactactctggaaacacataccacctcatcaccaagaattgcaaccacttctgtaatgatgtgtgcctcagattgacagagaggcctattcctcgttgggttaaccgtcttgctcgactcggtttattctgcaattgtgttcttccggctggcctgaacgaaactagggttcggcaagtaagatcagatggggggatttatggagataagaagaaattgagaagccattcaagtaatagtgcacccggttctggaggcagaggttctagacaaagacattgtcttccgccgtcttcgtcgttgatccattctacctcaaccccagctttgactgtaaagctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C97

Protein Analysis

212

Amino Acids

23.49

Weight (kDa)

9.71

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25170 AT5G25170
fragaria_vesca	FvH4_2g40830
malus_domestica	MD05G1207500.v1.1 MD08G1059400.v1.1 MD15G1036900.v1.1
prunus_persica	Prupe.1G391000_v2.0.a1 Prupe.1G391000_v2.0.a1 Prupe.1G391000_v2.0.a1
pyrus_communis	pycom08g04950 pycom15g03420
rosa_chinensis	RchiOBHm_Chr6g0299741
rosa_laevigata	RLG00000011392
rosa_multiflora	Rmu_sc0002895.1_g000018
rosa_roxburghii	Rroxscaffold_7G00168400
rosa_rugosa	Rorug06G0292000
rosa_samantha	Rh6AG402800 Rh6BG411400 Rh6CG417500 Rh6DG404300
rosa_wichuraiana	Rw6G035260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	10
AccB7I	CCANNNNNTGG	1 cut(s)	77
AccI	GTMKAC	2 cut(s)	57, 108
AciI	CCGC	1 cut(s)	581
AclWI	GGATC	1 cut(s)	592
AfaI	GTAC	1 cut(s)	129
AfiI	CCNNNNNNNGG	2 cut(s)	77, 545
AgsI	TTSAA	4 cut(s)	140, 185, 191, 525
AjnI	CCWGG	1 cut(s)	205
AjuI	GAANNNNNNNTTGG	2 cut(s)	132, 164
AluBI	AGCT	2 cut(s)	620, 634
AluI	AGCT	2 cut(s)	620, 634
Alw21I	GWGCWC	1 cut(s)	538
Alw44I	GTGCAC	1 cut(s)	534
AlwI	GGATC	1 cut(s)	592
AoxI	GGCC	3 cut(s)	97, 377, 445
ApaLI	GTGCAC	1 cut(s)	534
ArsI	GACNNNNNNTTYG	2 cut(s)	559, 591
Asp700I	GAANNNNTTC	1 cut(s)	520
AspLEI	GCGC	1 cut(s)	157
AspS9I	GGNCC	2 cut(s)	254, 265
AsuC2I	CCSGG	1 cut(s)	540
AsuHPI	GGTGA	1 cut(s)	316
AvaII	GGWCC	2 cut(s)	254, 265
BaeGI	GKGCMC	2 cut(s)	15, 538
BanI	GGYRCC	1 cut(s)	10
BbsI	GAAGAC	4 cut(s)	32, 300, 569, 579
Bbv12I	GWGCWC	1 cut(s)	538
BccI	CCATC	1 cut(s)	476
BceAI	ACGGC	1 cut(s)	568
BciT130I	CCWGG	1 cut(s)	207
BcnI	CCSGG	1 cut(s)	540
BfaI	CTAG	2 cut(s)	459, 561
Bme1390I	CCNGG	2 cut(s)	207, 540
Bme18I	GGWCC	2 cut(s)	254, 265
BmgT120I	GGNCC	2 cut(s)	254, 265
BmiI	GGNNCC	2 cut(s)	12, 256
BmrFI	CCNGG	2 cut(s)	207, 540
BmrI	ACTGGG	1 cut(s)	183
BmuI	ACTGGG	1 cut(s)	183
BpiI	GAAGAC	4 cut(s)	32, 300, 569, 579
BpmI	CTGGAG	1 cut(s)	567
BpuMI	CCSGG	1 cut(s)	540
BsaJI	CCNNGG	2 cut(s)	100, 205
BsaWI	WCCGGW	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 545
Bse1I	ACTGG	2 cut(s)	34, 178
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	2 cut(s)	100, 205
BseLI	CCNNNNNNNGG	2 cut(s)	77, 545
BseMII	CTCAG	1 cut(s)	376
BseNI	ACTGG	2 cut(s)	34, 178
BseSI	GKGCMC	2 cut(s)	15, 538
BseYI	CCCAGC	1 cut(s)	616
BshFI	GGCC	3 cut(s)	99, 379, 447
BshNI	GGYRCC	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	538
BsiSI	CCGG	4 cut(s)	41, 117, 440, 540
BslFI	GGGAC	1 cut(s)	240
BslI	CCNNNNNNNGG	2 cut(s)	77, 545
BsmFI	GGGAC	1 cut(s)	240
BsmI	GAATGC	1 cut(s)	272
BsnI	GGCC	3 cut(s)	99, 379, 447
Bsp1286I	GDGCHC	2 cut(s)	15, 538
Bsp143I	GATC	3 cut(s)	61, 476, 597
BspACI	CCGC	1 cut(s)	581
BspANI	GGCC	3 cut(s)	99, 379, 447
BspCNI	CTCAG	1 cut(s)	375
BspLI	GGNNCC	2 cut(s)	12, 256
BspPI	GGATC	1 cut(s)	592
BspT107I	GGYRCC	1 cut(s)	10
BsrI	ACTGG	2 cut(s)	34, 178
BssECI	CCNNGG	2 cut(s)	100, 205
BssMI	GATC	3 cut(s)	61, 476, 597
BssT1I	CCWWGG	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	401, 628
BstC8I	GCNNGC	2 cut(s)	122, 445
BstDEI	CTNAG	1 cut(s)	362
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	3 cut(s)	64, 479, 600
BstMBI	GATC	3 cut(s)	61, 476, 597
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	2 cut(s)	205, 538
BstSLI	GKGCMC	2 cut(s)	15, 538
BstV2I	GAAGAC	4 cut(s)	32, 300, 569, 579
BsuRI	GGCC	3 cut(s)	99, 379, 447
Cac8I	GCNNGC	2 cut(s)	122, 445
CfoI	GCGC	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	254, 265
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	4 cut(s)	131, 158, 164, 277
CviJI	RGCY	9 cut(s)	81, 94, 99, 379, 443, 447, 519, 620, 634
CviKI_1	RGCY	9 cut(s)	81, 94, 99, 379, 443, 447, 519, 620, 634
CviQI	GTAC	1 cut(s)	128
DdeI	CTNAG	1 cut(s)	362
DpnI	GATC	3 cut(s)	63, 478, 599
DpnII	GATC	3 cut(s)	61, 476, 597
EciI	GGCGGA	1 cut(s)	570
Eco130I	CCWWGG	1 cut(s)	100
Eco147I	AGGCCT	1 cut(s)	379
Eco47I	GGWCC	2 cut(s)	254, 265
EcoO109I	RGGNCCY	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	4 cut(s)	134, 161, 167, 280
FaiI	YATR	7 cut(s)	132, 144, 159, 165, 278, 313, 495
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	4 cut(s)	130, 157, 163, 276
FblI	GTMKAC	2 cut(s)	57, 108
FspBI	CTAG	2 cut(s)	459, 561
GlaI	GCGC	1 cut(s)	156
GsaI	CCCAGC	1 cut(s)	620
GsuI	CTGGAG	1 cut(s)	567
HaeIII	GGCC	3 cut(s)	99, 379, 447
HapII	CCGG	4 cut(s)	41, 117, 440, 540
HhaI	GCGC	1 cut(s)	157
Hin1II	CATG	4 cut(s)	134, 161, 167, 280
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	1 cut(s)	411
HpaI	GTTAAC	1 cut(s)	397
HpaII	CCGG	4 cut(s)	41, 117, 440, 540
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	4 cut(s)	58, 109, 397, 536
Hpy188I	TCNGA	4 cut(s)	221, 234, 365, 481
Hpy188III	TCNNGA	3 cut(s)	303, 546, 561
Hpy8I	GTNNAC	4 cut(s)	58, 109, 397, 536
Hpy99I	CGWCG	1 cut(s)	595
HpyCH4III	ACNGT	2 cut(s)	401, 628
HpyCH4V	TGCA	6 cut(s)	124, 167, 272, 336, 426, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	1 cut(s)	362
Hsp92II	CATG	4 cut(s)	134, 161, 167, 280
HspAI	GCGC	1 cut(s)	155
KspAI	GTTAAC	1 cut(s)	397
Kzo9I	GATC	3 cut(s)	61, 476, 597
LmnI	GCTCC	1 cut(s)	152
MaeI	CTAG	2 cut(s)	459, 561
MalI	GATC	3 cut(s)	63, 478, 599
MboI	GATC	3 cut(s)	61, 476, 597
MboII	GAAGA	9 cut(s)	31, 34, 37, 252, 305, 428, 517, 569, 579
MfeI	CAATTG	1 cut(s)	427
MhlI	GDGCHC	2 cut(s)	15, 538
MluCI	AATT	3 cut(s)	331, 427, 509
MlyI	GAGTC	1 cut(s)	405
MnlI	CCTC	8 cut(s)	256, 329, 369, 371, 396, 542, 548, 619
MroXI	GAANNNNTTC	1 cut(s)	520
MseI	TTAA	1 cut(s)	396
MslI	CAYNNNNRTG	1 cut(s)	162
MspI	CCGG	4 cut(s)	41, 117, 440, 540
MspR9I	CCNGG	2 cut(s)	207, 540
MunI	CAATTG	1 cut(s)	427
Mva1269I	GAATGC	1 cut(s)	272
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	152
NciI	CCSGG	1 cut(s)	540
NdeII	GATC	3 cut(s)	61, 476, 597
NlaIII	CATG	4 cut(s)	134, 161, 167, 280
NlaIV	GGNNCC	2 cut(s)	12, 256
PceI	AGGCCT	1 cut(s)	379
PctI	GAATGC	1 cut(s)	272
PdmI	GAANNNNTTC	1 cut(s)	520
PflFI	GACNNNGTC	1 cut(s)	573
PflMI	CCANNNNNTGG	1 cut(s)	77
PleI	GAGTC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	405
PpuMI	RGGWCCY	1 cut(s)	254
Psp5II	RGGWCCY	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	205
PspFI	CCCAGC	1 cut(s)	616
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	2 cut(s)	12, 256
PspPI	GGNCC	2 cut(s)	254, 265
PspPPI	RGGWCCY	1 cut(s)	254
PsyI	GACNNNGTC	1 cut(s)	573
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	396
Sau3AI	GATC	3 cut(s)	61, 476, 597
Sau96I	GGNCC	2 cut(s)	254, 265
SchI	GAGTC	1 cut(s)	405
ScrFI	CCNGG	2 cut(s)	207, 540
SduI	GDGCHC	2 cut(s)	15, 538
SetI	ASST	7 cut(s)	256, 267, 321, 559, 611, 622, 636
SinI	GGWCC	2 cut(s)	254, 265
SmiMI	CAYNNNNRTG	1 cut(s)	162
Sse9I	AATT	3 cut(s)	331, 427, 509
SseBI	AGGCCT	1 cut(s)	379
SsiI	CCGC	1 cut(s)	581
SspMI	CTAG	2 cut(s)	459, 561
StuI	AGGCCT	1 cut(s)	379
StyD4I	CCNGG	2 cut(s)	205, 538
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	2 cut(s)	401, 628
TaqI	TCGA	1 cut(s)	409
TasI	AATT	3 cut(s)	331, 427, 509
TatI	WGTACW	1 cut(s)	127
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TspDTI	ATGAA	1 cut(s)	265
TspGWI	ACGGA	1 cut(s)	257
Tth111I	GACNNNGTC	1 cut(s)	573
Van91I	CCANNNNNTGG	1 cut(s)	77
VneI	GTGCAC	1 cut(s)	534
VpaK11BI	GGWCC	2 cut(s)	254, 265
XbaI	TCTAGA	1 cut(s)	560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XmiI	GTMKAC	2 cut(s)	57, 108
XmnI	GAANNNNTTC	1 cut(s)	520
XspI	CTAG	2 cut(s)	459, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.