Rh6AG402800

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0010449
Physical Location & Seq
Forward (+)
59994309 .. 59997433
3125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG402800.1

Sequence Viewer

Length: 489 bp
ATGCTGTGTAGAATGGTATTGGTGCCCAAGAAGAAGAAGACTGGCAAAGTTCCGGTGTATCTCAATGTCTACGATCTCACACCAATCAATGGCTACGCCTATTGGCTTGGCCTTGGTGTCTACCATTCCGGCGTGCAAGTACATGGCGTTGAATATGCTTTTGGAGCGCATGACCATGCAACAACTGGGATTTTTGAAGTTGAACCAAAGAAATGCCCTGGTTTTGTATTCCGAAAATCCATTCTGATAGGAAGAACAGATTTAGGTCCCAAAGAGGTCCGTGCATTCATGGAGAAACTCGCAGAAGACTACTCTGGAAACACATACCACCTCATCACCAAGAATTGCAACCACTTCTGTAATGATGTGTGCCTCAGATTGACAGAGAGGCCTATTCCTCGTTGGGTTAACCGTCTTGCTCGACTCGGTAACAATTTCTTCTTCTCTTACAAGTTCCTTCATTGCATCCCCACCGTTAATGTTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

162

Amino Acids

18.61

Weight (kDa)

9.33

Isoelectric Point (pI)

19.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 18 - 148 8e-53 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 22
AccB7I CCANNNNNTGG 1 cut(s) 89
AccI GTMKAC 2 cut(s) 69, 120
AfaI GTAC 1 cut(s) 141
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 3 cut(s) 152, 197, 203
AjnI CCWGG 1 cut(s) 217
AjuI GAANNNNNNNTTGG 2 cut(s) 144, 176
AoxI GGCC 2 cut(s) 109, 389
AspLEI GCGC 1 cut(s) 169
AspS9I GGNCC 2 cut(s) 266, 277
AsuHPI GGTGA 1 cut(s) 328
AvaII GGWCC 2 cut(s) 266, 277
BaeGI GKGCMC 1 cut(s) 27
BanI GGYRCC 1 cut(s) 22
BbsI GAAGAC 2 cut(s) 44, 312
BciT130I CCWGG 1 cut(s) 219
Bme1390I CCNGG 1 cut(s) 219
Bme18I GGWCC 2 cut(s) 266, 277
BmgT120I GGNCC 2 cut(s) 266, 277
BmiI GGNNCC 2 cut(s) 24, 268
BmrFI CCNGG 1 cut(s) 219
BmrI ACTGGG 1 cut(s) 195
BmsI GCATC 1 cut(s) 474
BmuI ACTGGG 1 cut(s) 195
BpiI GAAGAC 2 cut(s) 44, 312
BsaJI CCNNGG 2 cut(s) 112, 217
BsaWI WCCGGW 1 cut(s) 52
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse1I ACTGG 2 cut(s) 46, 190
Bse3DI GCAATG 1 cut(s) 460
BseBI CCWGG 1 cut(s) 219
BseDI CCNNGG 2 cut(s) 112, 217
BseGI GGATG 1 cut(s) 465
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMI GCAATG 1 cut(s) 460
BseMII CTCAG 1 cut(s) 388
BseNI ACTGG 2 cut(s) 46, 190
BseSI GKGCMC 1 cut(s) 27
BshFI GGCC 2 cut(s) 111, 391
BshNI GGYRCC 1 cut(s) 22
BsiSI CCGG 2 cut(s) 53, 129
BslFI GGGAC 1 cut(s) 252
BslI CCNNNNNNNGG 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 252
BsmI GAATGC 1 cut(s) 284
BsnI GGCC 2 cut(s) 111, 391
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 1 cut(s) 73
BspANI GGCC 2 cut(s) 111, 391
BspCNI CTCAG 1 cut(s) 387
BspLI GGNNCC 2 cut(s) 24, 268
BspT107I GGYRCC 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 460
BsrI ACTGG 2 cut(s) 46, 190
BssECI CCNNGG 2 cut(s) 112, 217
BssMI GATC 1 cut(s) 73
BssT1I CCWWGG 1 cut(s) 112
Bst2UI CCWGG 1 cut(s) 219
Bst4CI ACNGT 2 cut(s) 413, 475
BstC8I GCNNGC 1 cut(s) 134
BstDEI CTNAG 1 cut(s) 374
BstF5I GGATG 1 cut(s) 465
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNI CCWGG 1 cut(s) 219
BstSCI CCNGG 1 cut(s) 217
BstSLI GKGCMC 1 cut(s) 27
BstV2I GAAGAC 2 cut(s) 44, 312
BsuRI GGCC 2 cut(s) 111, 391
BtsCI GGATG 1 cut(s) 465
Cac8I GCNNGC 1 cut(s) 134
CfoI GCGC 1 cut(s) 169
Cfr13I GGNCC 2 cut(s) 266, 277
Csp6I GTAC 1 cut(s) 140
CviAII CATG 4 cut(s) 143, 170, 176, 289
CviJI RGCY 4 cut(s) 93, 106, 111, 391
CviKI_1 RGCY 4 cut(s) 93, 106, 111, 391
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 1 cut(s) 374
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
Eco130I CCWWGG 1 cut(s) 112
Eco147I AGGCCT 1 cut(s) 391
Eco47I GGWCC 2 cut(s) 266, 277
EcoO109I RGGNCCY 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 112
FaeI CATG 4 cut(s) 146, 173, 179, 292
FaiI YATR 6 cut(s) 144, 156, 171, 177, 290, 325
FaqI GGGAC 1 cut(s) 252
FatI CATG 4 cut(s) 142, 169, 175, 288
FblI GTMKAC 2 cut(s) 69, 120
FokI GGATG 1 cut(s) 452
GlaI GCGC 1 cut(s) 168
HaeIII GGCC 2 cut(s) 111, 391
HapII CCGG 2 cut(s) 53, 129
HhaI GCGC 1 cut(s) 169
Hin1II CATG 4 cut(s) 146, 173, 179, 292
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HinfI GANTC 1 cut(s) 423
HpaI GTTAAC 1 cut(s) 409
HpaII CCGG 2 cut(s) 53, 129
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 3 cut(s) 70, 121, 409
Hpy188I TCNGA 3 cut(s) 233, 246, 377
Hpy188III TCNNGA 1 cut(s) 315
Hpy8I GTNNAC 3 cut(s) 70, 121, 409
HpyAV CCTTC 1 cut(s) 467
HpyCH4III ACNGT 2 cut(s) 413, 475
HpyCH4V TGCA 5 cut(s) 136, 179, 284, 348, 465
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 374
Hsp92II CATG 4 cut(s) 146, 173, 179, 292
HspAI GCGC 1 cut(s) 167
KspAI GTTAAC 1 cut(s) 409
Kzo9I GATC 1 cut(s) 73
LmnI GCTCC 1 cut(s) 164
LpnPI CCDG 7 cut(s) 27, 66, 142, 171, 204, 231, 300
LweI GCATC 1 cut(s) 474
MaeIII GTNAC 1 cut(s) 428
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 7 cut(s) 43, 46, 49, 264, 317, 430, 433
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 2 cut(s) 343, 433
MlyI GAGTC 1 cut(s) 417
MnlI CCTC 5 cut(s) 268, 341, 381, 383, 408
MseI TTAA 2 cut(s) 408, 477
MslI CAYNNNNRTG 1 cut(s) 174
MspI CCGG 2 cut(s) 53, 129
MspR9I CCNGG 1 cut(s) 219
Mva1269I GAATGC 1 cut(s) 284
MvaI CCWGG 1 cut(s) 219
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeII GATC 1 cut(s) 73
NlaIII CATG 4 cut(s) 146, 173, 179, 292
NlaIV GGNNCC 2 cut(s) 24, 268
PceI AGGCCT 1 cut(s) 391
PctI GAATGC 1 cut(s) 284
PflMI CCANNNNNTGG 1 cut(s) 89
PleI GAGTC 1 cut(s) 417
PpsI GAGTC 1 cut(s) 417
PpuMI RGGWCCY 1 cut(s) 266
Psp5II RGGWCCY 1 cut(s) 266
Psp6I CCWGG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 217
PspN4I GGNNCC 2 cut(s) 24, 268
PspPI GGNCC 2 cut(s) 266, 277
PspPPI RGGWCCY 1 cut(s) 266
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 174
SaqAI TTAA 2 cut(s) 408, 477
Sau3AI GATC 1 cut(s) 73
Sau96I GGNCC 2 cut(s) 266, 277
SchI GAGTC 1 cut(s) 417
ScrFI CCNGG 1 cut(s) 219
SduI GDGCHC 1 cut(s) 27
SetI ASST 3 cut(s) 268, 279, 333
SfaNI GCATC 1 cut(s) 474
SinI GGWCC 2 cut(s) 266, 277
SmiMI CAYNNNNRTG 1 cut(s) 174
Sse9I AATT 2 cut(s) 343, 433
SseBI AGGCCT 1 cut(s) 391
StuI AGGCCT 1 cut(s) 391
StyD4I CCNGG 1 cut(s) 217
StyI CCWWGG 1 cut(s) 112
TaaI ACNGT 2 cut(s) 413, 475
TaqI TCGA 1 cut(s) 421
TasI AATT 2 cut(s) 343, 433
TatI WGTACW 1 cut(s) 139
Tru1I TTAA 2 cut(s) 408, 477
Tru9I TTAA 2 cut(s) 408, 477
TspDTI ATGAA 2 cut(s) 277, 449
TspGWI ACGGA 1 cut(s) 269
Van91I CCANNNNNTGG 1 cut(s) 89
VpaK11BI GGWCC 2 cut(s) 266, 277
XcmI CCANNNNNNNNNTGG 1 cut(s) 182
XmiI GTMKAC 2 cut(s) 69, 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.