RchiOBHm_Chr6g0299741

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0010449
Physical Location & Seq
Forward (+)
60771067 .. 60774111
3045 bp
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UTR
Exon/CDS
Intron
PRQ26914

Sequence Viewer

Length: 651 bp
ATGCTGTGTAGAATGGTATTGGTGCCCAAGAAGAAGAAGACTGGCAAAGTTCCGGTGTATCTCAATGTCTACGATCTCACACCAATCAATGGCTACGCCTATTGGCTTGGCCTTGGTGTCTACCATTCCGGCGTGCAAGTACACGGCGTTGAATATGCTTTTGGAGCGCATGACCATGCAACAACTGGGATTTTTGAAGTTGAACCAAAGAAATGCCCTGGTTTTGTATTCCGAAAATCCATTCTGATAGGAAGAACAGATTTAGGTCCCAAAGAGGTCCGTGCATTCATGGAGAAACTCGCAGAAGACTACTCTGGAAACACATACCACCTCATCACCAAGAATTGCAACCACTTCTGTAATGATGTGTGCCTCAGATTGACAGAGAGGCCTATTCCTCGTTGGGTTAACCGTCTTGCTCGACTCGGTTTATTCTGCAATTGTGTTCTTCCGGCTGGCCTGAACGAAACTAGGGTTCGGCAAGTAAGATCAGATGGGGGGATTTATGGAGATAAGAAGAAATTGAGAAGCCATTCAAGTAATAGTGCACCCGATTCTGGAGGCAGAGGTTCTAGACAAAGACATTGTCTTCCGCCGTCTTCATCGTTGATCCATTCTACCTCAACCCCAGCTTTGACTGTAAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

216

Amino Acids

24.06

Weight (kDa)

9.65

Isoelectric Point (pI)

35.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 18 - 152 6.2e-54 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 22
AccB7I CCANNNNNTGG 1 cut(s) 89
AccI GTMKAC 2 cut(s) 69, 120
AciI CCGC 1 cut(s) 593
AclWI GGATC 1 cut(s) 604
AfaI GTAC 1 cut(s) 141
AfiI CCNNNNNNNGG 2 cut(s) 89, 557
AgsI TTSAA 4 cut(s) 152, 197, 203, 537
AjnI CCWGG 1 cut(s) 217
AjuI GAANNNNNNNTTGG 2 cut(s) 144, 176
AluBI AGCT 2 cut(s) 632, 646
AluI AGCT 2 cut(s) 632, 646
Alw21I GWGCWC 1 cut(s) 550
Alw44I GTGCAC 1 cut(s) 546
AlwI GGATC 1 cut(s) 604
AoxI GGCC 3 cut(s) 109, 389, 457
ApaLI GTGCAC 1 cut(s) 546
ArsI GACNNNNNNTTYG 2 cut(s) 571, 603
Asp700I GAANNNNTTC 1 cut(s) 532
AspLEI GCGC 1 cut(s) 169
AspS9I GGNCC 2 cut(s) 266, 277
AsuHPI GGTGA 1 cut(s) 328
AvaII GGWCC 2 cut(s) 266, 277
BaeGI GKGCMC 2 cut(s) 27, 550
BanI GGYRCC 1 cut(s) 22
BbsI GAAGAC 4 cut(s) 44, 312, 581, 591
Bbv12I GWGCWC 1 cut(s) 550
BccI CCATC 1 cut(s) 488
BceAI ACGGC 2 cut(s) 160, 580
BciT130I CCWGG 1 cut(s) 219
BfaI CTAG 2 cut(s) 471, 573
Bme1390I CCNGG 1 cut(s) 219
Bme18I GGWCC 2 cut(s) 266, 277
BmgT120I GGNCC 2 cut(s) 266, 277
BmiI GGNNCC 2 cut(s) 24, 268
BmrFI CCNGG 1 cut(s) 219
BmrI ACTGGG 1 cut(s) 195
BmuI ACTGGG 1 cut(s) 195
BpiI GAAGAC 4 cut(s) 44, 312, 581, 591
BpmI CTGGAG 1 cut(s) 579
BsaJI CCNNGG 2 cut(s) 112, 217
BsaWI WCCGGW 1 cut(s) 52
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 557
Bse1I ACTGG 2 cut(s) 46, 190
BseBI CCWGG 1 cut(s) 219
BseDI CCNNGG 2 cut(s) 112, 217
BseLI CCNNNNNNNGG 2 cut(s) 89, 557
BseMII CTCAG 1 cut(s) 388
BseNI ACTGG 2 cut(s) 46, 190
BseSI GKGCMC 2 cut(s) 27, 550
BseYI CCCAGC 1 cut(s) 628
BshFI GGCC 3 cut(s) 111, 391, 459
BshNI GGYRCC 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 550
BsiSI CCGG 3 cut(s) 53, 129, 452
BslFI GGGAC 1 cut(s) 252
BslI CCNNNNNNNGG 2 cut(s) 89, 557
BsmFI GGGAC 1 cut(s) 252
BsmI GAATGC 1 cut(s) 284
BsnI GGCC 3 cut(s) 111, 391, 459
Bsp1286I GDGCHC 2 cut(s) 27, 550
Bsp143I GATC 3 cut(s) 73, 488, 609
BspACI CCGC 1 cut(s) 593
BspANI GGCC 3 cut(s) 111, 391, 459
BspCNI CTCAG 1 cut(s) 387
BspLI GGNNCC 2 cut(s) 24, 268
BspPI GGATC 1 cut(s) 604
BspT107I GGYRCC 1 cut(s) 22
BsrI ACTGG 2 cut(s) 46, 190
BssECI CCNNGG 2 cut(s) 112, 217
BssMI GATC 3 cut(s) 73, 488, 609
BssT1I CCWWGG 1 cut(s) 112
Bst2UI CCWGG 1 cut(s) 219
Bst4CI ACNGT 2 cut(s) 413, 640
BstC8I GCNNGC 2 cut(s) 134, 457
BstDEI CTNAG 1 cut(s) 374
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 3 cut(s) 76, 491, 612
BstMBI GATC 3 cut(s) 73, 488, 609
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNI CCWGG 1 cut(s) 219
BstSCI CCNGG 1 cut(s) 217
BstSLI GKGCMC 2 cut(s) 27, 550
BstV2I GAAGAC 4 cut(s) 44, 312, 581, 591
BsuRI GGCC 3 cut(s) 111, 391, 459
Cac8I GCNNGC 2 cut(s) 134, 457
CfoI GCGC 1 cut(s) 169
Cfr13I GGNCC 2 cut(s) 266, 277
Csp6I GTAC 1 cut(s) 140
CviAII CATG 3 cut(s) 170, 176, 289
CviJI RGCY 9 cut(s) 93, 106, 111, 391, 455, 459, 531, 632, 646
CviKI_1 RGCY 9 cut(s) 93, 106, 111, 391, 455, 459, 531, 632, 646
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 1 cut(s) 374
DpnI GATC 3 cut(s) 75, 490, 611
DpnII GATC 3 cut(s) 73, 488, 609
EciI GGCGGA 1 cut(s) 582
Eco130I CCWWGG 1 cut(s) 112
Eco147I AGGCCT 1 cut(s) 391
Eco47I GGWCC 2 cut(s) 266, 277
EcoO109I RGGNCCY 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 112
FaeI CATG 3 cut(s) 173, 179, 292
FaiI YATR 6 cut(s) 156, 171, 177, 290, 325, 507
FaqI GGGAC 1 cut(s) 252
FatI CATG 3 cut(s) 169, 175, 288
FblI GTMKAC 2 cut(s) 69, 120
FspBI CTAG 2 cut(s) 471, 573
GlaI GCGC 1 cut(s) 168
GsaI CCCAGC 1 cut(s) 632
GsuI CTGGAG 1 cut(s) 579
HaeIII GGCC 3 cut(s) 111, 391, 459
HapII CCGG 3 cut(s) 53, 129, 452
HhaI GCGC 1 cut(s) 169
Hin1II CATG 3 cut(s) 173, 179, 292
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HindIII AAGCTT 1 cut(s) 644
HinfI GANTC 2 cut(s) 423, 554
HpaI GTTAAC 1 cut(s) 409
HpaII CCGG 3 cut(s) 53, 129, 452
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 5 cut(s) 70, 121, 142, 409, 548
Hpy188I TCNGA 4 cut(s) 233, 246, 377, 493
Hpy188III TCNNGA 3 cut(s) 315, 558, 573
Hpy8I GTNNAC 5 cut(s) 70, 121, 142, 409, 548
HpyCH4III ACNGT 2 cut(s) 413, 640
HpyCH4V TGCA 6 cut(s) 136, 179, 284, 348, 438, 548
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 374
Hsp92II CATG 3 cut(s) 173, 179, 292
HspAI GCGC 1 cut(s) 167
KspAI GTTAAC 1 cut(s) 409
Kzo9I GATC 3 cut(s) 73, 488, 609
LmnI GCTCC 1 cut(s) 164
MaeI CTAG 2 cut(s) 471, 573
MalI GATC 3 cut(s) 75, 490, 611
MboI GATC 3 cut(s) 73, 488, 609
MboII GAAGA 9 cut(s) 43, 46, 49, 264, 317, 440, 529, 581, 591
MfeI CAATTG 1 cut(s) 439
MhlI GDGCHC 2 cut(s) 27, 550
MluCI AATT 3 cut(s) 343, 439, 521
MlyI GAGTC 1 cut(s) 417
MnlI CCTC 8 cut(s) 268, 341, 381, 383, 408, 554, 560, 631
MroXI GAANNNNTTC 1 cut(s) 532
MseI TTAA 1 cut(s) 408
MslI CAYNNNNRTG 1 cut(s) 174
MspI CCGG 3 cut(s) 53, 129, 452
MspR9I CCNGG 1 cut(s) 219
MunI CAATTG 1 cut(s) 439
Mva1269I GAATGC 1 cut(s) 284
MvaI CCWGG 1 cut(s) 219
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeII GATC 3 cut(s) 73, 488, 609
NlaIII CATG 3 cut(s) 173, 179, 292
NlaIV GGNNCC 2 cut(s) 24, 268
PceI AGGCCT 1 cut(s) 391
PctI GAATGC 1 cut(s) 284
PdmI GAANNNNTTC 1 cut(s) 532
PfeI GAWTC 1 cut(s) 554
PflFI GACNNNGTC 1 cut(s) 585
PflMI CCANNNNNTGG 1 cut(s) 89
PleI GAGTC 1 cut(s) 417
PpsI GAGTC 1 cut(s) 417
PpuMI RGGWCCY 1 cut(s) 266
Psp5II RGGWCCY 1 cut(s) 266
Psp6I CCWGG 1 cut(s) 217
PspFI CCCAGC 1 cut(s) 628
PspGI CCWGG 1 cut(s) 217
PspN4I GGNNCC 2 cut(s) 24, 268
PspPI GGNCC 2 cut(s) 266, 277
PspPPI RGGWCCY 1 cut(s) 266
PsyI GACNNNGTC 1 cut(s) 585
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 174
SaqAI TTAA 1 cut(s) 408
Sau3AI GATC 3 cut(s) 73, 488, 609
Sau96I GGNCC 2 cut(s) 266, 277
SchI GAGTC 1 cut(s) 417
ScrFI CCNGG 1 cut(s) 219
SduI GDGCHC 2 cut(s) 27, 550
SetI ASST 7 cut(s) 268, 279, 333, 571, 623, 634, 648
SinI GGWCC 2 cut(s) 266, 277
SmiMI CAYNNNNRTG 1 cut(s) 174
Sse9I AATT 3 cut(s) 343, 439, 521
SseBI AGGCCT 1 cut(s) 391
SsiI CCGC 1 cut(s) 593
SspMI CTAG 2 cut(s) 471, 573
StuI AGGCCT 1 cut(s) 391
StyD4I CCNGG 1 cut(s) 217
StyI CCWWGG 1 cut(s) 112
TaaI ACNGT 2 cut(s) 413, 640
TaqI TCGA 1 cut(s) 421
TasI AATT 3 cut(s) 343, 439, 521
TatI WGTACW 1 cut(s) 139
TfiI GAWTC 1 cut(s) 554
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TspDTI ATGAA 2 cut(s) 277, 591
TspGWI ACGGA 1 cut(s) 269
Tth111I GACNNNGTC 1 cut(s) 585
Van91I CCANNNNNTGG 1 cut(s) 89
VneI GTGCAC 1 cut(s) 546
VpaK11BI GGWCC 2 cut(s) 266, 277
XbaI TCTAGA 1 cut(s) 572
XcmI CCANNNNNNNNNTGG 1 cut(s) 182
XmiI GTMKAC 2 cut(s) 69, 120
XmnI GAANNNNTTC 1 cut(s) 532
XspI CTAG 2 cut(s) 471, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.