Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011531

Physical Location & Seq

Genomic Coordinates Forward (+)

29133174 .. 29135105

Gene Structure 1932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g41070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGATGGAGTATTCTCGTTGCTCTAGCAAAGAAAACCAGGGAGATAGTCTGGAAGCAGACCTGCAATGTGTGCGCAAAGAGAACGAAGCTCTAAGATTCCTAGTTGAAGCTATGAGCAGCAAGTACACCAGACTTGAGGCCCATCTCCAACTGCTCCGACTCCAACTTCAACAAAACAAGTCTCCAACACACGATGATCATCATCGTATGACTACCACTGGCTCAGGATGTCATGATATTTATGATCCAACTGCAAACAAGAGAGCAAGAACAACTGCTTTTGCTCATTGTAATCACCAGCAGCATCCTCAGTTCCCGGTAGCCAATAAGACGTCGCAGTTCCTTATCAGAACCGACTCTAAAGACAATACCCTTATTGTGAAAGATGGATATCAATGGAGGAAGTACGGACAGAAGGTGACCAAGGACAACCCATTATCCCCTCGAGCTTATTACAGGTGCTCCATGGCTCCAACTTGCCCTGTCAAAAAGAAGGTACAGAGATGCATGCTGGACAAGTCGATCCTTGTGGCAACATATGAAGGCCACCACAACCATGACACCCTCGATAACTCTAATTCCCTACTGCTTGGACAAATAATTTCATCTTCGCCTTCATCAACACTAGTCCCATCTCCTCGTAATCAGATTCTGCCTGTTGATTTTCCTCAAGCAGCTGTAGTACATGGAGTGCTACAAAGCACCAGTACTAGTACCGCAGCTGGCCCTATTACTATGACGAGTCCTCTTTCTCGGCAGGAGCCAACAAATCTTGATCTTACTCTCTGCGGATCTAAATTCAAATCCAATCAAGAAGAGAACACACCAGGACGAGGAGGCAGCCCTGTTGGGACTATTAGTACTGCTGATAAGACCTGTGAAAATGAGAAAATACAAGAATACGTTTCTTCTCTAACCAAAGATCCGAATTTCACCGTAGCTTTAGCTGCTGCTGTTGCCCGCTCCATTAGAACTGCTCCATCTGCACCTAACCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002237 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

333

Amino Acids

36.68

Weight (kDa)

8.89

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	128 - 187	4.5e-23	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011531)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g41070 FvH4_2g41070 FvH4_2g41070
malus_domestica	MD00G1143600.v1.1 MD15G1039600.v1.1
prunus_persica	Prupe.1G393100_v2.0.a1
pyrus_communis	pycom08g04720 pycom08g04730 pycom08g04740 pycom15g03700
rosa_chinensis	RchiOBHm_Chr6g0299481
rosa_laevigata	RLG00000011428
rosa_multiflora	Rmu_sc0001184.1_g000007
rosa_roxburghii	Rroxscaffold_7G00168640
rosa_rugosa	Rorug06G0289100
rosa_samantha	Rh6AG400400 Rh6BG409100 Rh6CG414600 Rh6DG401500
rosa_wichuraiana	Rw6G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	335
Acc16I	TGCGCA	1 cut(s)	74
Acc36I	ACCTGC	1 cut(s)	69
AccBSI	CCGCTC	1 cut(s)	963
AciI	CCGC	3 cut(s)	717, 789, 961
AclWI	GGATC	4 cut(s)	239, 517, 799, 917
AcsI	RAATTY	2 cut(s)	797, 928
AcyI	GRCGYC	1 cut(s)	332
AfaI	GTAC	7 cut(s)	125, 407, 498, 684, 709, 715, 862
AfiI	CCNNNNNNNGG	1 cut(s)	833
AgsI	TTSAA	3 cut(s)	107, 170, 802
AhlI	ACTAGT	2 cut(s)	625, 710
AjnI	CCWGG	2 cut(s)	36, 826
AluBI	AGCT	7 cut(s)	89, 110, 449, 677, 722, 941, 947
AluI	AGCT	7 cut(s)	89, 110, 449, 677, 722, 941, 947
Alw21I	GWGCWC	1 cut(s)	464
Alw26I	GTCTC	1 cut(s)	186
AlwI	GGATC	4 cut(s)	239, 517, 799, 917
AlwNI	CAGNNNCTG	1 cut(s)	652
Ama87I	CYCGRG	1 cut(s)	444
AoxI	GGCC	3 cut(s)	138, 544, 724
ApeKI	GCWGC	7 cut(s)	117, 301, 674, 719, 840, 947, 950
ApoI	RAATTY	2 cut(s)	797, 928
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	2 cut(s)	139, 725
AsuC2I	CCSGG	1 cut(s)	317
AsuHPI	GGTGA	3 cut(s)	287, 430, 925
AvaI	CYCGRG	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	464
BbvI	GCAGC	7 cut(s)	129, 313, 686, 731, 852, 934, 937
BccI	CCATC	4 cut(s)	150, 380, 640, 988
BciT130I	CCWGG	2 cut(s)	38, 828
BclI	TGATCA	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	186
BcuI	ACTAGT	2 cut(s)	625, 710
BfaI	CTAG	4 cut(s)	24, 101, 626, 711
BfmI	CTRYAG	1 cut(s)	678
BfuAI	ACCTGC	1 cut(s)	69
BisI	GCNGC	7 cut(s)	118, 302, 675, 720, 841, 948, 951
BlsI	GCNGC	7 cut(s)	119, 303, 676, 721, 842, 949, 952
BmcAI	AGTACT	2 cut(s)	709, 862
Bme1390I	CCNGG	3 cut(s)	38, 317, 828
BmeT110I	CYCGRG	1 cut(s)	444
BmgT120I	GGNCC	2 cut(s)	139, 725
BmiI	GGNNCC	2 cut(s)	471, 762
BmrFI	CCNGG	3 cut(s)	38, 317, 828
BmsI	GCATC	2 cut(s)	313, 494
Bpu10I	CCTNAGC	1 cut(s)	223
BpuEI	CTTGAG	2 cut(s)	155, 654
BpuMI	CCSGG	1 cut(s)	317
BsaBI	GATNNNNATC	3 cut(s)	198, 201, 390
BsaHI	GRCGYC	1 cut(s)	332
BsaJI	CCNNGG	3 cut(s)	37, 423, 465
BsaXI	ACNNNNNCTCC	2 cut(s)	446, 476
Bsc4I	CCNNNNNNNGG	1 cut(s)	833
Bse1I	ACTGG	2 cut(s)	223, 705
Bse3DI	GCAATG	1 cut(s)	71
Bse8I	GATNNNNATC	3 cut(s)	198, 201, 390
BseBI	CCWGG	2 cut(s)	38, 828
BseDI	CCNNGG	3 cut(s)	37, 423, 465
BseGI	GGATG	2 cut(s)	233, 304
BseJI	GATNNNNATC	3 cut(s)	198, 201, 390
BseLI	CCNNNNNNNGG	1 cut(s)	833
BseMI	GCAATG	1 cut(s)	71
BseMII	CTCAG	2 cut(s)	237, 323
BseNI	ACTGG	2 cut(s)	223, 705
BseRI	GAGGAG	2 cut(s)	627, 849
BseXI	GCAGC	7 cut(s)	129, 313, 686, 731, 852, 934, 937
BsgI	GTGCAG	1 cut(s)	969
BshFI	GGCC	3 cut(s)	140, 546, 726
BsiHKAI	GWGCWC	1 cut(s)	464
BsiHKCI	CYCGRG	1 cut(s)	444
BsiSI	CCGG	1 cut(s)	317
BslFI	GGGAC	2 cut(s)	614, 865
BslI	CCNNNNNNNGG	1 cut(s)	833
BsmAI	GTCTC	1 cut(s)	186
BsmFI	GGGAC	2 cut(s)	614, 865
BsnI	GGCC	3 cut(s)	140, 546, 726
BsoBI	CYCGRG	1 cut(s)	444
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp143I	GATC	6 cut(s)	196, 244, 522, 775, 791, 922
Bsp19I	CCATGG	1 cut(s)	465
BspACI	CCGC	3 cut(s)	717, 789, 961
BspANI	GGCC	3 cut(s)	140, 546, 726
BspCNI	CTCAG	2 cut(s)	236, 322
BspHI	TCATGA	1 cut(s)	232
BspLI	GGNNCC	2 cut(s)	471, 762
BspMI	ACCTGC	1 cut(s)	69
BspPI	GGATC	4 cut(s)	239, 517, 799, 917
BsrBI	CCGCTC	1 cut(s)	963
BsrDI	GCAATG	1 cut(s)	71
BsrI	ACTGG	2 cut(s)	223, 705
BssECI	CCNNGG	3 cut(s)	37, 423, 465
BssMI	GATC	6 cut(s)	196, 244, 522, 775, 791, 922
BssNI	GRCGYC	1 cut(s)	332
BssT1I	CCWWGG	2 cut(s)	423, 465
Bst2UI	CCWGG	2 cut(s)	38, 828
Bst4CI	ACNGT	1 cut(s)	937
Bst6I	CTCTTC	1 cut(s)	810
BstACI	GRCGYC	1 cut(s)	332
BstAPI	GCANNNNNTGC	1 cut(s)	70
BstC8I	GCNNGC	3 cut(s)	509, 724, 961
BstDEI	CTNAG	3 cut(s)	92, 223, 309
BstDSI	CCRYGG	1 cut(s)	465
BstEII	GGTNACC	1 cut(s)	418
BstF5I	GGATG	2 cut(s)	233, 304
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	6 cut(s)	199, 247, 525, 778, 794, 925
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	6 cut(s)	196, 244, 522, 775, 791, 922
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 947, 956, 983
BstNI	CCWGG	2 cut(s)	38, 828
BstNSI	RCATGY	1 cut(s)	511
BstPI	GGTNACC	1 cut(s)	418
BstSCI	CCNGG	3 cut(s)	36, 315, 826
BstSFI	CTRYAG	1 cut(s)	678
BstV1I	GCAGC	7 cut(s)	129, 313, 686, 731, 852, 934, 937
BstX2I	RGATCY	2 cut(s)	791, 922
BstYI	RGATCY	2 cut(s)	791, 922
BsuRI	GGCC	3 cut(s)	140, 546, 726
BtgI	CCRYGG	1 cut(s)	465
BtsCI	GGATG	2 cut(s)	233, 304
BtsIMutI	CAGTG	1 cut(s)	216
BveI	ACCTGC	1 cut(s)	69
Cac8I	GCNNGC	3 cut(s)	509, 724, 961
CaiI	CAGNNNCTG	1 cut(s)	652
CciI	TCATGA	1 cut(s)	232
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	2 cut(s)	139, 725
Csp6I	GTAC	7 cut(s)	124, 406, 497, 683, 708, 714, 861
CviAII	CATG	5 cut(s)	233, 466, 508, 557, 686
CviQI	GTAC	7 cut(s)	124, 406, 497, 683, 708, 714, 861
DdeI	CTNAG	3 cut(s)	92, 223, 309
DpnI	GATC	6 cut(s)	198, 246, 524, 777, 793, 924
DpnII	GATC	6 cut(s)	196, 244, 522, 775, 791, 922
Eam1104I	CTCTTC	1 cut(s)	810
EarI	CTCTTC	1 cut(s)	810
Eco130I	CCWWGG	2 cut(s)	423, 465
Eco32I	GATATC	1 cut(s)	392
Eco88I	CYCGRG	1 cut(s)	444
Eco91I	GGTNACC	1 cut(s)	418
EcoO65I	GGTNACC	1 cut(s)	418
EcoRII	CCWGG	2 cut(s)	36, 826
EcoRV	GATATC	1 cut(s)	392
EcoT14I	CCWWGG	2 cut(s)	423, 465
EcoT22I	ATGCAT	1 cut(s)	509
ErhI	CCWWGG	2 cut(s)	423, 465
FaeI	CATG	5 cut(s)	236, 469, 511, 560, 689
FaqI	GGGAC	2 cut(s)	614, 865
FatI	CATG	5 cut(s)	232, 465, 507, 556, 685
FauI	CCCGC	1 cut(s)	968
FauNDI	CATATG	1 cut(s)	538
FbaI	TGATCA	1 cut(s)	196
Fnu4HI	GCNGC	7 cut(s)	118, 302, 675, 720, 841, 948, 951
FokI	GGATG	2 cut(s)	240, 291
Fsp4HI	GCNGC	7 cut(s)	118, 302, 675, 720, 841, 948, 951
FspBI	CTAG	4 cut(s)	24, 101, 626, 711
FspI	TGCGCA	1 cut(s)	74
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	7 cut(s)	118, 302, 675, 720, 841, 948, 951
HaeIII	GGCC	3 cut(s)	140, 546, 726
HapII	CCGG	1 cut(s)	317
HhaI	GCGC	1 cut(s)	75
Hin1I	GRCGYC	1 cut(s)	332
Hin1II	CATG	5 cut(s)	236, 469, 511, 560, 689
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HinfI	GANTC	5 cut(s)	96, 159, 356, 649, 742
HpaII	CCGG	1 cut(s)	317
HphI	GGTGA	3 cut(s)	287, 430, 925
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	4 cut(s)	158, 350, 648, 927
Hpy188III	TCNNGA	5 cut(s)	50, 225, 233, 773, 812
Hpy8I	GTNNAC	1 cut(s)	126
Hpy99I	CGWCG	1 cut(s)	337
HpyAV	CCTTC	4 cut(s)	409, 487, 536, 624
HpyCH4III	ACNGT	1 cut(s)	937
HpyCH4IV	ACGT	2 cut(s)	332, 903
HpyCH4V	TGCA	4 cut(s)	64, 254, 507, 986
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 947, 956, 983
HpyF3I	CTNAG	3 cut(s)	92, 223, 309
HpySE526I	ACGT	2 cut(s)	332, 903
Hsp92I	GRCGYC	1 cut(s)	332
Hsp92II	CATG	5 cut(s)	236, 469, 511, 560, 689
HspAI	GCGC	1 cut(s)	73
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	6 cut(s)	196, 244, 522, 775, 791, 922
LmnI	GCTCC	6 cut(s)	159, 467, 475, 760, 968, 982
Lsp1109I	GCAGC	7 cut(s)	129, 313, 686, 731, 852, 934, 937
LweI	GCATC	2 cut(s)	313, 494
MaeI	CTAG	4 cut(s)	24, 101, 626, 711
MaeII	ACGT	2 cut(s)	332, 903
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	6 cut(s)	198, 246, 524, 777, 793, 924
MbiI	CCGCTC	1 cut(s)	963
MboI	GATC	6 cut(s)	196, 244, 522, 775, 791, 922
MboII	GAAGA	3 cut(s)	600, 827, 900
MflI	RGATCY	2 cut(s)	791, 922
MhlI	GDGCHC	1 cut(s)	464
MluCI	AATT	4 cut(s)	577, 600, 797, 928
MlyI	GAGTC	3 cut(s)	153, 350, 751
MmeI	TCCRAC	6 cut(s)	172, 181, 187, 209, 272, 497
Mph1103I	ATGCAT	1 cut(s)	509
MslI	CAYNNNNRTG	1 cut(s)	555
MspA1I	CMGCKG	2 cut(s)	677, 722
MspI	CCGG	1 cut(s)	317
MspR9I	CCNGG	3 cut(s)	38, 317, 828
MvaI	CCWGG	2 cut(s)	38, 828
MwoI	GCNNNNNNNGC	4 cut(s)	70, 947, 956, 983
NciI	CCSGG	1 cut(s)	317
NcoI	CCATGG	1 cut(s)	465
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	6 cut(s)	196, 244, 522, 775, 791, 922
NlaIII	CATG	5 cut(s)	236, 469, 511, 560, 689
NlaIV	GGNNCC	2 cut(s)	471, 762
NmeAIII	GCCGAG	1 cut(s)	733
NmuCI	GTSAC	1 cut(s)	418
NsbI	TGCGCA	1 cut(s)	74
NsiI	ATGCAT	1 cut(s)	509
NspI	RCATGY	1 cut(s)	511
PaeI	GCATGC	1 cut(s)	511
PaeR7I	CTCGAG	1 cut(s)	444
PagI	TCATGA	1 cut(s)	232
PfeI	GAWTC	2 cut(s)	96, 649
PkrI	GCNGC	7 cut(s)	119, 303, 676, 721, 842, 949, 952
PleI	GAGTC	3 cut(s)	153, 350, 750
PpsI	GAGTC	3 cut(s)	153, 350, 750
Psp6I	CCWGG	2 cut(s)	36, 826
PspEI	GGTNACC	1 cut(s)	418
PspGI	CCWGG	2 cut(s)	36, 826
PspN4I	GGNNCC	2 cut(s)	471, 762
PspPI	GGNCC	2 cut(s)	139, 725
PspXI	VCTCGAGB	1 cut(s)	444
PstNI	CAGNNNCTG	1 cut(s)	652
PsuI	RGATCY	2 cut(s)	791, 922
PvuII	CAGCTG	2 cut(s)	677, 722
RsaI	GTAC	7 cut(s)	125, 407, 498, 684, 709, 715, 862
RsaNI	GTAC	7 cut(s)	124, 406, 497, 683, 708, 714, 861
RseI	CAYNNNNRTG	1 cut(s)	555
SatI	GCNGC	7 cut(s)	118, 302, 675, 720, 841, 948, 951
Sau3AI	GATC	6 cut(s)	196, 244, 522, 775, 791, 922
Sau96I	GGNCC	2 cut(s)	139, 725
ScaI	AGTACT	2 cut(s)	709, 862
SchI	GAGTC	3 cut(s)	153, 350, 751
ScrFI	CCNGG	3 cut(s)	38, 317, 828
SduI	GDGCHC	1 cut(s)	464
SfaNI	GCATC	2 cut(s)	313, 494
SfcI	CTRYAG	1 cut(s)	678
Sfr274I	CTCGAG	1 cut(s)	444
SlaI	CTCGAG	1 cut(s)	444
SmiMI	CAYNNNNRTG	1 cut(s)	555
SmlI	CTYRAG	3 cut(s)	134, 444, 669
SmoI	CTYRAG	3 cut(s)	134, 444, 669
SpeI	ACTAGT	2 cut(s)	625, 710
SphI	GCATGC	1 cut(s)	511
Sse9I	AATT	4 cut(s)	577, 600, 797, 928
SsiI	CCGC	3 cut(s)	717, 789, 961
SspMI	CTAG	4 cut(s)	24, 101, 626, 711
StyD4I	CCNGG	3 cut(s)	36, 315, 826
StyI	CCWWGG	2 cut(s)	423, 465
TaaI	ACNGT	1 cut(s)	937
TaiI	ACGT	2 cut(s)	335, 906
TaqI	TCGA	3 cut(s)	445, 521, 567
TasI	AATT	4 cut(s)	577, 600, 797, 928
TatI	WGTACW	4 cut(s)	123, 682, 707, 860
TfiI	GAWTC	2 cut(s)	96, 649
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	7 cut(s)	117, 301, 674, 719, 840, 947, 950
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	3 cut(s)	555, 594, 606
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	1 cut(s)	223
XapI	RAATTY	2 cut(s)	797, 928
XceI	RCATGY	1 cut(s)	511
XhoI	CTCGAG	1 cut(s)	444
XspI	CTAG	4 cut(s)	24, 101, 626, 711
ZraI	GACGTC	1 cut(s)	333
ZrmI	AGTACT	2 cut(s)	709, 862
Zsp2I	ATGCAT	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.