Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011531

Physical Location & Seq

Genomic Coordinates Reverse (-)

60534849 .. 60535910

Gene Structure 1062 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26892

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGAGCAGAAAGTACACTAGACTTGAGTCCCAGCTCCAACTGATCCGACTCGATCTCCAACAAAACAAGTCTTCAACACACGATGATCATGATCATCATGAGATGACTACTACTGGCTCAGGATGCTCATCATATGATATTTTTGATCCAACTGCAAACAAGAGGGCAAGAACAACTGCTTTTTCTCATTGTGATCACCAGCAGCATCATCACTTTCCAGTAGCCAATAAGACATCGCAGTTCCTAGTGAGAACCGACTCTAAAGACAACACCCTTATTGTGAAAGATGGATATCAATGGAGGAAGTACGGGCAGAAGGTGACCAAGGACAACCCATCATCCCCTCGAGCTTATTTCAGGTGCTCCATGGCTCCAACTTGCCCAGTCAAAAAGAAGGTACAGAGATGCATGCAGGACAAGTCAATCCTTGTGGCAACATATGAAGGCCACCACAACCATGACATCATCAATAATTCTAATTCCCTACGGCTTGGACAAATAATTTCATCTTCATCTTCATCACCACCAGCCCCAGCTCCTCATAATCAAATTATGTCTGTTGATTTTCCTCCAGCAGTAGTACATGGATTGCTACAGAGCAGCAGTACTAGTACCGCAGCTGACCCTATTACTATGAGGAGTCCTCCTTCTCGGCGGGAGCCTATCACGCTTGATCTTACTCTCTCCGGCTCTAAATCCAAATCCAATCAAGAAGAGAACAGACCAGGACGAGGAAGCCCTGCTGGTACTACTAGTACTAGTACTAGTACTAGTACTAGTACTACTGATCAGACCTGTGAAAATGAGAAAATACAAGAATACGTTACTTATCTAACCAAAGATCCGAATTTCACTGTAGCTTTAGCTGCTGCTGTTGCCCGCTCCATTAAAACTGATCAACCTGCACGTAACCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002237 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

305

Amino Acids

33.77

Weight (kDa)

9.18

Isoelectric Point (pI)

56.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	95 - 154	4.4e-23	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011531)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g41070 FvH4_2g41070 FvH4_2g41070
malus_domestica	MD00G1143600.v1.1 MD15G1039600.v1.1
prunus_persica	Prupe.1G393100_v2.0.a1
pyrus_communis	pycom08g04720 pycom08g04730 pycom08g04740 pycom15g03700
rosa_chinensis	RchiOBHm_Chr6g0299481
rosa_laevigata	RLG00000011428
rosa_multiflora	Rmu_sc0001184.1_g000007
rosa_roxburghii	Rroxscaffold_7G00168640
rosa_rugosa	Rorug06G0289100
rosa_samantha	Rh6AG400400 Rh6BG409100 Rh6CG414600 Rh6DG401500
rosa_wichuraiana	Rw6G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	910
AccBSI	CCGCTC	1 cut(s)	882
AciI	CCGC	3 cut(s)	615, 655, 880
AclWI	GGATC	3 cut(s)	37, 140, 836
AcsI	RAATTY	1 cut(s)	847
AfiI	CCNNNNNNNGG	1 cut(s)	731
AgsI	TTSAA	1 cut(s)	75
AhlI	ACTAGT	6 cut(s)	608, 752, 758, 764, 770, 776
AjnI	CCWGG	1 cut(s)	724
AluBI	AGCT	6 cut(s)	34, 350, 536, 620, 860, 866
AluI	AGCT	6 cut(s)	34, 350, 536, 620, 860, 866
Alw21I	GWGCWC	1 cut(s)	365
AlwI	GGATC	3 cut(s)	37, 140, 836
Ama87I	CYCGRG	1 cut(s)	345
AoxI	GGCC	1 cut(s)	445
ApeKI	GCWGC	5 cut(s)	202, 600, 617, 866, 869
ApoI	RAATTY	1 cut(s)	847
AsuHPI	GGTGA	3 cut(s)	188, 331, 513
AvaI	CYCGRG	1 cut(s)	345
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	365
BbvI	GCAGC	5 cut(s)	214, 612, 629, 853, 856
BccI	CCATC	2 cut(s)	281, 343
BceAI	ACGGC	1 cut(s)	503
BciT130I	CCWGG	1 cut(s)	726
BclI	TGATCA	5 cut(s)	85, 91, 193, 787, 895
BcuI	ACTAGT	6 cut(s)	608, 752, 758, 764, 770, 776
BfaI	CTAG	8 cut(s)	18, 245, 609, 753, 759, 765, 771, 777
BfmI	CTRYAG	2 cut(s)	593, 855
BfuAI	ACCTGC	1 cut(s)	910
BisI	GCNGC	5 cut(s)	203, 601, 618, 867, 870
BlsI	GCNGC	5 cut(s)	204, 602, 619, 868, 871
BmcAI	AGTACT	6 cut(s)	607, 757, 763, 769, 775, 781
Bme1390I	CCNGG	1 cut(s)	726
BmeT110I	CYCGRG	1 cut(s)	345
BmiI	GGNNCC	2 cut(s)	372, 660
BmrFI	CCNGG	1 cut(s)	726
BmrI	ACTGGG	1 cut(s)	377
BmsI	GCATC	3 cut(s)	113, 214, 395
BmuI	ACTGGG	1 cut(s)	377
BoxI	GACNNNNGTC	1 cut(s)	25
BpiI	GAAGAC	1 cut(s)	63
BplI	GAGNNNNNCTC	2 cut(s)	628, 660
BpmI	CTGGAG	1 cut(s)	555
Bpu10I	CCTNAGC	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	44
BsaAI	YACGTR	1 cut(s)	908
BsaBI	GATNNNNATC	3 cut(s)	90, 127, 291
BsaJI	CCNNGG	2 cut(s)	324, 366
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bsc4I	CCNNNNNNNGG	1 cut(s)	731
Bse1I	ACTGG	3 cut(s)	118, 218, 383
Bse8I	GATNNNNATC	3 cut(s)	90, 127, 291
BseBI	CCWGG	1 cut(s)	726
BseDI	CCNNGG	2 cut(s)	324, 366
BseGI	GGATG	2 cut(s)	128, 338
BseJI	GATNNNNATC	3 cut(s)	90, 127, 291
BseLI	CCNNNNNNNGG	1 cut(s)	731
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	3 cut(s)	118, 218, 383
BseRI	GAGGAG	2 cut(s)	528, 652
BseXI	GCAGC	5 cut(s)	214, 612, 629, 853, 856
BseYI	CCCAGC	2 cut(s)	30, 532
BsgI	GTGCAG	1 cut(s)	888
BshFI	GGCC	1 cut(s)	447
BsiHKAI	GWGCWC	1 cut(s)	365
BsiHKCI	CYCGRG	1 cut(s)	345
BsiSI	CCGG	1 cut(s)	687
BslFI	GGGAC	1 cut(s)	13
BslI	CCNNNNNNNGG	1 cut(s)	731
BsmFI	GGGAC	1 cut(s)	13
BsnI	GGCC	1 cut(s)	447
BsoBI	CYCGRG	1 cut(s)	345
Bsp1286I	GDGCHC	1 cut(s)	365
Bsp19I	CCATGG	1 cut(s)	366
BspACI	CCGC	3 cut(s)	615, 655, 880
BspANI	GGCC	1 cut(s)	447
BspCNI	CTCAG	1 cut(s)	131
BspHI	TCATGA	2 cut(s)	88, 97
BspLI	GGNNCC	2 cut(s)	372, 660
BspMI	ACCTGC	1 cut(s)	910
BspPI	GGATC	3 cut(s)	37, 140, 836
BsrBI	CCGCTC	1 cut(s)	882
BsrI	ACTGG	3 cut(s)	118, 218, 383
BssECI	CCNNGG	2 cut(s)	324, 366
BssT1I	CCWWGG	2 cut(s)	324, 366
Bst2UI	CCWGG	1 cut(s)	726
Bst4CI	ACNGT	1 cut(s)	856
Bst6I	CTCTTC	1 cut(s)	708
BstBAI	YACGTR	1 cut(s)	908
BstC8I	GCNNGC	2 cut(s)	410, 880
BstDEI	CTNAG	1 cut(s)	118
BstDSI	CCRYGG	1 cut(s)	366
BstEII	GGTNACC	1 cut(s)	319
BstF5I	GGATG	2 cut(s)	128, 338
BstMWI	GCNNNNNNNGC	4 cut(s)	123, 667, 866, 875
BstNI	CCWGG	1 cut(s)	726
BstNSI	RCATGY	1 cut(s)	412
BstPAI	GACNNNNGTC	1 cut(s)	25
BstPI	GGTNACC	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	724
BstSFI	CTRYAG	2 cut(s)	593, 855
BstV1I	GCAGC	5 cut(s)	214, 612, 629, 853, 856
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	841
BstYI	RGATCY	1 cut(s)	841
BsuRI	GGCC	1 cut(s)	447
BtgI	CCRYGG	1 cut(s)	366
BtgZI	GCGATG	1 cut(s)	219
BtsCI	GGATG	2 cut(s)	128, 338
BtsIMutI	CAGTG	1 cut(s)	852
BveI	ACCTGC	1 cut(s)	910
Cac8I	GCNNGC	2 cut(s)	410, 880
CciI	TCATGA	2 cut(s)	88, 97
CspCI	CAANNNNNGTGG	2 cut(s)	411, 446
CviAII	CATG	6 cut(s)	89, 98, 367, 409, 458, 584
DdeI	CTNAG	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	708
EarI	CTCTTC	1 cut(s)	708
Eco130I	CCWWGG	2 cut(s)	324, 366
Eco32I	GATATC	1 cut(s)	293
Eco88I	CYCGRG	1 cut(s)	345
Eco91I	GGTNACC	1 cut(s)	319
EcoO65I	GGTNACC	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	724
EcoRV	GATATC	1 cut(s)	293
EcoT14I	CCWWGG	2 cut(s)	324, 366
EcoT22I	ATGCAT	1 cut(s)	410
ErhI	CCWWGG	2 cut(s)	324, 366
FaeI	CATG	6 cut(s)	92, 101, 370, 412, 461, 587
FaqI	GGGAC	1 cut(s)	13
FatI	CATG	6 cut(s)	88, 97, 366, 408, 457, 583
FauI	CCCGC	2 cut(s)	648, 887
FauNDI	CATATG	2 cut(s)	133, 439
FbaI	TGATCA	5 cut(s)	85, 91, 193, 787, 895
Fnu4HI	GCNGC	5 cut(s)	203, 601, 618, 867, 870
FokI	GGATG	2 cut(s)	135, 325
Fsp4HI	GCNGC	5 cut(s)	203, 601, 618, 867, 870
FspBI	CTAG	8 cut(s)	18, 245, 609, 753, 759, 765, 771, 777
GluI	GCNGC	5 cut(s)	203, 601, 618, 867, 870
GsaI	CCCAGC	2 cut(s)	34, 536
GsuI	CTGGAG	1 cut(s)	555
HaeIII	GGCC	1 cut(s)	447
HapII	CCGG	1 cut(s)	687
Hin1II	CATG	6 cut(s)	92, 101, 370, 412, 461, 587
HinfI	GANTC	4 cut(s)	26, 48, 257, 640
HpaII	CCGG	1 cut(s)	687
HphI	GGTGA	3 cut(s)	188, 331, 513
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	3 cut(s)	47, 792, 846
Hpy188III	TCNNGA	4 cut(s)	89, 98, 120, 710
Hpy8I	GTNNAC	1 cut(s)	15
HpyAV	CCTTC	4 cut(s)	310, 388, 437, 657
HpyCH4III	ACNGT	1 cut(s)	856
HpyCH4IV	ACGT	2 cut(s)	822, 907
HpyCH4V	TGCA	4 cut(s)	155, 408, 412, 905
HpyF10VI	GCNNNNNNNGC	4 cut(s)	123, 667, 866, 875
HpyF3I	CTNAG	1 cut(s)	118
HpySE526I	ACGT	2 cut(s)	822, 907
Hsp92II	CATG	6 cut(s)	92, 101, 370, 412, 461, 587
Ksp22I	TGATCA	5 cut(s)	85, 91, 193, 787, 895
LmnI	GCTCC	6 cut(s)	39, 368, 376, 541, 658, 887
Lsp1109I	GCAGC	5 cut(s)	214, 612, 629, 853, 856
LweI	GCATC	3 cut(s)	113, 214, 395
MaeI	CTAG	8 cut(s)	18, 245, 609, 753, 759, 765, 771, 777
MaeII	ACGT	2 cut(s)	822, 907
MaeIII	GTNAC	3 cut(s)	319, 823, 908
MbiI	CCGCTC	1 cut(s)	882
MboII	GAAGA	4 cut(s)	63, 501, 507, 725
MflI	RGATCY	1 cut(s)	841
MhlI	GDGCHC	1 cut(s)	365
MluCI	AATT	5 cut(s)	472, 478, 501, 549, 847
MlyI	GAGTC	4 cut(s)	35, 42, 251, 649
MmeI	TCCRAC	5 cut(s)	61, 70, 82, 173, 398
MnlI	CCTC	8 cut(s)	156, 294, 354, 549, 579, 630, 654, 725
Mph1103I	ATGCAT	1 cut(s)	410
MseI	TTAA	1 cut(s)	888
MslI	CAYNNNNRTG	1 cut(s)	456
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	1 cut(s)	687
MspR9I	CCNGG	1 cut(s)	726
MvaI	CCWGG	1 cut(s)	726
MwoI	GCNNNNNNNGC	4 cut(s)	123, 667, 866, 875
NcoI	CCATGG	1 cut(s)	366
NdeI	CATATG	2 cut(s)	133, 439
NlaIII	CATG	6 cut(s)	92, 101, 370, 412, 461, 587
NlaIV	GGNNCC	2 cut(s)	372, 660
NmeAIII	GCCGAG	1 cut(s)	631
NmuCI	GTSAC	1 cut(s)	319
NsiI	ATGCAT	1 cut(s)	410
NspI	RCATGY	1 cut(s)	412
PaeI	GCATGC	1 cut(s)	412
PaeR7I	CTCGAG	1 cut(s)	345
PagI	TCATGA	2 cut(s)	88, 97
PkrI	GCNGC	5 cut(s)	204, 602, 619, 868, 871
PleI	GAGTC	4 cut(s)	34, 42, 251, 648
PpsI	GAGTC	4 cut(s)	34, 42, 251, 648
Ppu21I	YACGTR	1 cut(s)	908
PshAI	GACNNNNGTC	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	724
PspEI	GGTNACC	1 cut(s)	319
PspFI	CCCAGC	2 cut(s)	30, 532
PspGI	CCWGG	1 cut(s)	724
PspN4I	GGNNCC	2 cut(s)	372, 660
PspXI	VCTCGAGB	1 cut(s)	345
PsuI	RGATCY	1 cut(s)	841
PvuII	CAGCTG	1 cut(s)	620
RseI	CAYNNNNRTG	1 cut(s)	456
SaqAI	TTAA	1 cut(s)	888
SatI	GCNGC	5 cut(s)	203, 601, 618, 867, 870
ScaI	AGTACT	6 cut(s)	607, 757, 763, 769, 775, 781
SchI	GAGTC	4 cut(s)	35, 42, 251, 649
ScrFI	CCNGG	1 cut(s)	726
SduI	GDGCHC	1 cut(s)	365
SfaNI	GCATC	3 cut(s)	113, 214, 395
SfcI	CTRYAG	2 cut(s)	593, 855
Sfr274I	CTCGAG	1 cut(s)	345
SlaI	CTCGAG	1 cut(s)	345
SmiMI	CAYNNNNRTG	1 cut(s)	456
SmlI	CTYRAG	2 cut(s)	23, 345
SmoI	CTYRAG	2 cut(s)	23, 345
SpeI	ACTAGT	6 cut(s)	608, 752, 758, 764, 770, 776
SphI	GCATGC	1 cut(s)	412
Sse9I	AATT	5 cut(s)	472, 478, 501, 549, 847
SsiI	CCGC	3 cut(s)	615, 655, 880
SspMI	CTAG	8 cut(s)	18, 245, 609, 753, 759, 765, 771, 777
StyD4I	CCNGG	1 cut(s)	724
StyI	CCWWGG	2 cut(s)	324, 366
TaaI	ACNGT	1 cut(s)	856
TaiI	ACGT	2 cut(s)	825, 910
TaqI	TCGA	2 cut(s)	51, 346
TasI	AATT	5 cut(s)	472, 478, 501, 549, 847
TatI	WGTACW	8 cut(s)	12, 580, 605, 755, 761, 767, 773, 779
Tru1I	TTAA	1 cut(s)	888
Tru9I	TTAA	1 cut(s)	888
TscAI	CASTG	1 cut(s)	859
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	5 cut(s)	202, 600, 617, 866, 869
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	4 cut(s)	456, 495, 501, 507
TspRI	CASTG	1 cut(s)	859
XapI	RAATTY	1 cut(s)	847
XceI	RCATGY	1 cut(s)	412
XhoI	CTCGAG	1 cut(s)	345
XspI	CTAG	8 cut(s)	18, 245, 609, 753, 759, 765, 771, 777
ZrmI	AGTACT	6 cut(s)	607, 757, 763, 769, 775, 781
Zsp2I	ATGCAT	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.