Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0011531

Physical Location & Seq

Genomic Coordinates Reverse (-)

59569388 .. 59571071

Gene Structure 1684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G035050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGAGTATCCTCATACCTCTAGCAAAGAAAAGCAGGTTGATCAGCAGGGAGATAGTCTGGAAGCAGACCTGCAGTGTGTGCGAAAAGAGAATGAAGCTCTAAGATTCCTACTTGAAGCTATGAGCAGCAAGTATACTAGACTTGAGGCCCAGCTCCAACTGATCCGACTCGATCTCCAACAAAACAAGTCTTCAACACACGATGATCATGATCATCATGAGATGACTACTACTGGCTCAGGATGCTCATCATATGATATTTTTGATCCAGCTGCAAACAAGAGGGCAAGAACAACTGCTTTTGCTCATTGTGATCACCAGCAGCATCGTCACTTTCCAGTAGCCAATAAGACATCGCAGTTCCTAGTGAGAACCGACTCTAAAGACAACACCCTTATTGTGAAAGATGGATATCAATGGAGGAAGTACGGGCAGAAGGTGACCAAGGACAACCCATCATCCCCTCGAGCTTATTTCAGGTGCTCCATGGCTCCAACTTGCCCAGTCAAAAAGAAGGTACAGAGATGCATGCAGGACAAGTCAATCATTGTGGCAACATATGAAGGCCACCACAACCATGACATCATCAATAATTCTAATTCCCTACTGCTTGGACGAATAATTTCATCTTCATCTTCATCACCACCAACCCCAGCTCCTCATAATCAAATTATGTCTGTTGATTTTCCTCCAGCAGTAGTACATGGATTGCTACAGAGCAGCAGTACTAGTACCGCAGCTGACCTTATTACTATGAGGAGTCCTCCTTCTCGGCCGGAGCCCATCACGCTTGATCTTACTCTCTCCGGCTCTAAATCCAAATCCAATCAAGAAGAGAACAGACCAGGACGAGGAAGCCCTGCTGGTACTACTAGTACTAGTACTAGTACTACTGATCAGACCTGTGAAAATGAGAAAATACAAGAATACGTTACTTATCTAACCAAAGATCCGAATTTCACTGTAGCTTTAGCTGCTGCTGTTGCCCGCTCCATTAAAACTGATCAACCTGCACGTAACCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002237 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

341

Amino Acids

37.87

Weight (kDa)

8.39

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	135 - 194	5.7e-23	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011531)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g41070 FvH4_2g41070 FvH4_2g41070
malus_domestica	MD00G1143600.v1.1 MD15G1039600.v1.1
prunus_persica	Prupe.1G393100_v2.0.a1
pyrus_communis	pycom08g04720 pycom08g04730 pycom08g04740 pycom15g03700
rosa_chinensis	RchiOBHm_Chr6g0299481
rosa_laevigata	RLG00000011428
rosa_multiflora	Rmu_sc0001184.1_g000007
rosa_roxburghii	Rroxscaffold_7G00168640
rosa_rugosa	Rorug06G0289100
rosa_samantha	Rh6AG400400 Rh6BG409100 Rh6CG414600 Rh6DG401500
rosa_wichuraiana	Rw6G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	25, 78, 1018
AccBSI	CCGCTC	1 cut(s)	990
AccI	GTMKAC	1 cut(s)	134
AciI	CCGC	2 cut(s)	735, 988
AclWI	GGATC	3 cut(s)	157, 260, 944
AcoI	YGGCCR	1 cut(s)	773
AcsI	RAATTY	1 cut(s)	955
AfaI	GTAC	9 cut(s)	428, 519, 702, 727, 733, 868, 877, 883, 889
AfiI	CCNNNNNNNGG	1 cut(s)	851
AgsI	TTSAA	2 cut(s)	116, 195
AhlI	ACTAGT	4 cut(s)	728, 872, 878, 884
AjnI	CCWGG	1 cut(s)	844
AluBI	AGCT	9 cut(s)	98, 119, 154, 272, 470, 656, 740, 968, 974
AluI	AGCT	9 cut(s)	98, 119, 154, 272, 470, 656, 740, 968, 974
Alw21I	GWGCWC	1 cut(s)	485
AlwI	GGATC	3 cut(s)	157, 260, 944
Ama87I	CYCGRG	1 cut(s)	465
AoxI	GGCC	3 cut(s)	147, 565, 773
ApeKI	GCWGC	7 cut(s)	126, 272, 322, 720, 737, 974, 977
ApoI	RAATTY	1 cut(s)	955
Asp700I	GAANNNNTTC	1 cut(s)	622
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	3 cut(s)	308, 451, 633
AvaI	CYCGRG	1 cut(s)	465
BanII	GRGCYC	1 cut(s)	783
BbsI	GAAGAC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	485
BbvI	GCAGC	7 cut(s)	138, 259, 334, 732, 749, 961, 964
BccI	CCATC	3 cut(s)	401, 463, 791
BciT130I	CCWGG	1 cut(s)	846
BciVI	GTATCC	1 cut(s)	18
BclI	TGATCA	6 cut(s)	40, 205, 211, 313, 895, 1003
BcuI	ACTAGT	4 cut(s)	728, 872, 878, 884
BfaI	CTAG	7 cut(s)	21, 138, 365, 729, 873, 879, 885
BfmI	CTRYAG	3 cut(s)	71, 713, 963
BfuAI	ACCTGC	3 cut(s)	25, 78, 1018
BfuI	GTATCC	1 cut(s)	18
BisI	GCNGC	7 cut(s)	127, 273, 323, 721, 738, 975, 978
BlsI	GCNGC	7 cut(s)	128, 274, 324, 722, 739, 976, 979
BmcAI	AGTACT	4 cut(s)	727, 877, 883, 889
Bme1390I	CCNGG	1 cut(s)	846
BmeT110I	CYCGRG	1 cut(s)	465
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	2 cut(s)	492, 780
BmrFI	CCNGG	1 cut(s)	846
BmrI	ACTGGG	1 cut(s)	497
BmsI	GCATC	3 cut(s)	233, 334, 515
BmuI	ACTGGG	1 cut(s)	497
BpiI	GAAGAC	1 cut(s)	183
BplI	GAGNNNNNCTC	2 cut(s)	748, 780
BpmI	CTGGAG	1 cut(s)	675
Bpu10I	CCTNAGC	1 cut(s)	238
BpuEI	CTTGAG	1 cut(s)	164
BsaAI	YACGTR	1 cut(s)	1016
BsaBI	GATNNNNATC	3 cut(s)	210, 247, 411
BsaJI	CCNNGG	2 cut(s)	444, 486
BsaXI	ACNNNNNCTCC	4 cut(s)	159, 189, 640, 670
Bsc4I	CCNNNNNNNGG	1 cut(s)	851
Bse1I	ACTGG	3 cut(s)	238, 338, 503
Bse8I	GATNNNNATC	3 cut(s)	210, 247, 411
BseBI	CCWGG	1 cut(s)	846
BseDI	CCNNGG	2 cut(s)	444, 486
BseGI	GGATG	2 cut(s)	248, 458
BseJI	GATNNNNATC	3 cut(s)	210, 247, 411
BseLI	CCNNNNNNNGG	1 cut(s)	851
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	3 cut(s)	238, 338, 503
BseRI	GAGGAG	2 cut(s)	648, 772
BseX3I	CGGCCG	1 cut(s)	773
BseXI	GCAGC	7 cut(s)	138, 259, 334, 732, 749, 961, 964
BseYI	CCCAGC	2 cut(s)	150, 652
BsgI	GTGCAG	1 cut(s)	996
Bsh1285I	CGRYCG	1 cut(s)	776
BshFI	GGCC	3 cut(s)	149, 567, 775
BsiEI	CGRYCG	1 cut(s)	776
BsiHKAI	GWGCWC	1 cut(s)	485
BsiHKCI	CYCGRG	1 cut(s)	465
BsiSI	CCGG	2 cut(s)	776, 807
BslI	CCNNNNNNNGG	1 cut(s)	851
BsnI	GGCC	3 cut(s)	149, 567, 775
BsoBI	CYCGRG	1 cut(s)	465
Bsp1286I	GDGCHC	2 cut(s)	485, 783
Bsp19I	CCATGG	1 cut(s)	486
BspACI	CCGC	2 cut(s)	735, 988
BspANI	GGCC	3 cut(s)	149, 567, 775
BspCNI	CTCAG	1 cut(s)	251
BspHI	TCATGA	2 cut(s)	208, 217
BspLI	GGNNCC	2 cut(s)	492, 780
BspMAI	CTGCAG	1 cut(s)	75
BspMI	ACCTGC	3 cut(s)	25, 78, 1018
BspPI	GGATC	3 cut(s)	157, 260, 944
BsrBI	CCGCTC	1 cut(s)	990
BsrI	ACTGG	3 cut(s)	238, 338, 503
BssECI	CCNNGG	2 cut(s)	444, 486
BssNAI	GTATAC	1 cut(s)	135
BssT1I	CCWWGG	2 cut(s)	444, 486
Bst1107I	GTATAC	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	846
Bst4CI	ACNGT	1 cut(s)	964
Bst6I	CTCTTC	1 cut(s)	828
BstAPI	GCANNNNNTGC	1 cut(s)	79
BstBAI	YACGTR	1 cut(s)	1016
BstC8I	GCNNGC	2 cut(s)	530, 988
BstDEI	CTNAG	2 cut(s)	101, 238
BstDSI	CCRYGG	1 cut(s)	486
BstEII	GGTNACC	1 cut(s)	439
BstF5I	GGATG	2 cut(s)	248, 458
BstMCI	CGRYCG	1 cut(s)	776
BstMWI	GCNNNNNNNGC	5 cut(s)	79, 243, 787, 974, 983
BstNI	CCWGG	1 cut(s)	846
BstNSI	RCATGY	1 cut(s)	532
BstPI	GGTNACC	1 cut(s)	439
BstSCI	CCNGG	1 cut(s)	844
BstSFI	CTRYAG	3 cut(s)	71, 713, 963
BstV1I	GCAGC	7 cut(s)	138, 259, 334, 732, 749, 961, 964
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	949
BstYI	RGATCY	1 cut(s)	949
BstZ17I	GTATAC	1 cut(s)	135
BstZI	CGGCCG	1 cut(s)	773
BsuI	GTATCC	1 cut(s)	18
BsuRI	GGCC	3 cut(s)	149, 567, 775
BtgI	CCRYGG	1 cut(s)	486
BtgZI	GCGATG	1 cut(s)	339
BtsCI	GGATG	2 cut(s)	248, 458
BtsI	GCAGTG	1 cut(s)	80
BtsIMutI	CAGTG	2 cut(s)	80, 960
BveI	ACCTGC	3 cut(s)	25, 78, 1018
Cac8I	GCNNGC	2 cut(s)	530, 988
CciI	TCATGA	2 cut(s)	208, 217
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	9 cut(s)	427, 518, 701, 726, 732, 867, 876, 882, 888
CspCI	CAANNNNNGTGG	2 cut(s)	531, 566
CviAII	CATG	6 cut(s)	209, 218, 487, 529, 578, 704
CviQI	GTAC	9 cut(s)	427, 518, 701, 726, 732, 867, 876, 882, 888
DdeI	CTNAG	2 cut(s)	101, 238
EaeI	YGGCCR	1 cut(s)	773
EagI	CGGCCG	1 cut(s)	773
Eam1104I	CTCTTC	1 cut(s)	828
EarI	CTCTTC	1 cut(s)	828
EclXI	CGGCCG	1 cut(s)	773
Eco130I	CCWWGG	2 cut(s)	444, 486
Eco24I	GRGCYC	1 cut(s)	783
Eco32I	GATATC	1 cut(s)	413
Eco52I	CGGCCG	1 cut(s)	773
Eco88I	CYCGRG	1 cut(s)	465
Eco91I	GGTNACC	1 cut(s)	439
EcoO65I	GGTNACC	1 cut(s)	439
EcoRII	CCWGG	1 cut(s)	844
EcoRV	GATATC	1 cut(s)	413
EcoT14I	CCWWGG	2 cut(s)	444, 486
EcoT22I	ATGCAT	1 cut(s)	530
EcoT38I	GRGCYC	1 cut(s)	783
ErhI	CCWWGG	2 cut(s)	444, 486
FaeI	CATG	6 cut(s)	212, 221, 490, 532, 581, 707
FatI	CATG	6 cut(s)	208, 217, 486, 528, 577, 703
FauI	CCCGC	1 cut(s)	995
FauNDI	CATATG	2 cut(s)	253, 559
FbaI	TGATCA	6 cut(s)	40, 205, 211, 313, 895, 1003
FblI	GTMKAC	1 cut(s)	134
Fnu4HI	GCNGC	7 cut(s)	127, 273, 323, 721, 738, 975, 978
FokI	GGATG	2 cut(s)	255, 445
FriOI	GRGCYC	1 cut(s)	783
Fsp4HI	GCNGC	7 cut(s)	127, 273, 323, 721, 738, 975, 978
FspBI	CTAG	7 cut(s)	21, 138, 365, 729, 873, 879, 885
GluI	GCNGC	7 cut(s)	127, 273, 323, 721, 738, 975, 978
GsaI	CCCAGC	2 cut(s)	154, 656
GsuI	CTGGAG	1 cut(s)	675
HaeIII	GGCC	3 cut(s)	149, 567, 775
HapII	CCGG	2 cut(s)	776, 807
Hin1II	CATG	6 cut(s)	212, 221, 490, 532, 581, 707
HinfI	GANTC	4 cut(s)	105, 168, 377, 760
HpaII	CCGG	2 cut(s)	776, 807
HphI	GGTGA	3 cut(s)	308, 451, 633
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	3 cut(s)	167, 900, 954
Hpy188III	TCNNGA	5 cut(s)	59, 209, 218, 240, 830
Hpy8I	GTNNAC	1 cut(s)	135
HpyAV	CCTTC	4 cut(s)	430, 508, 557, 777
HpyCH4III	ACNGT	1 cut(s)	964
HpyCH4IV	ACGT	2 cut(s)	930, 1015
HpyCH4V	TGCA	5 cut(s)	73, 275, 528, 532, 1013
HpyF10VI	GCNNNNNNNGC	5 cut(s)	79, 243, 787, 974, 983
HpyF3I	CTNAG	2 cut(s)	101, 238
HpySE526I	ACGT	2 cut(s)	930, 1015
Hsp92II	CATG	6 cut(s)	212, 221, 490, 532, 581, 707
Ksp22I	TGATCA	6 cut(s)	40, 205, 211, 313, 895, 1003
LmnI	GCTCC	6 cut(s)	159, 488, 496, 661, 778, 995
Lsp1109I	GCAGC	7 cut(s)	138, 259, 334, 732, 749, 961, 964
LweI	GCATC	3 cut(s)	233, 334, 515
MaeI	CTAG	7 cut(s)	21, 138, 365, 729, 873, 879, 885
MaeII	ACGT	2 cut(s)	930, 1015
MaeIII	GTNAC	4 cut(s)	329, 439, 931, 1016
MbiI	CCGCTC	1 cut(s)	990
MboII	GAAGA	4 cut(s)	183, 621, 627, 845
MflI	RGATCY	1 cut(s)	949
MhlI	GDGCHC	2 cut(s)	485, 783
MluCI	AATT	5 cut(s)	592, 598, 621, 669, 955
MlyI	GAGTC	3 cut(s)	162, 371, 769
MmeI	TCCRAC	4 cut(s)	181, 190, 202, 518
Mph1103I	ATGCAT	1 cut(s)	530
MroXI	GAANNNNTTC	1 cut(s)	622
MseI	TTAA	1 cut(s)	996
MslI	CAYNNNNRTG	1 cut(s)	576
MspA1I	CMGCKG	2 cut(s)	272, 740
MspI	CCGG	2 cut(s)	776, 807
MspR9I	CCNGG	1 cut(s)	846
MvaI	CCWGG	1 cut(s)	846
MwoI	GCNNNNNNNGC	5 cut(s)	79, 243, 787, 974, 983
NcoI	CCATGG	1 cut(s)	486
NdeI	CATATG	2 cut(s)	253, 559
NlaIII	CATG	6 cut(s)	212, 221, 490, 532, 581, 707
NlaIV	GGNNCC	2 cut(s)	492, 780
NmeAIII	GCCGAG	1 cut(s)	751
NmuCI	GTSAC	2 cut(s)	329, 439
NsiI	ATGCAT	1 cut(s)	530
NspI	RCATGY	1 cut(s)	532
PaeI	GCATGC	1 cut(s)	532
PaeR7I	CTCGAG	1 cut(s)	465
PagI	TCATGA	2 cut(s)	208, 217
PdmI	GAANNNNTTC	1 cut(s)	622
PfeI	GAWTC	1 cut(s)	105
PkrI	GCNGC	7 cut(s)	128, 274, 324, 722, 739, 976, 979
PleI	GAGTC	3 cut(s)	162, 371, 768
PpsI	GAGTC	3 cut(s)	162, 371, 768
Ppu21I	YACGTR	1 cut(s)	1016
Psp6I	CCWGG	1 cut(s)	844
PspEI	GGTNACC	1 cut(s)	439
PspFI	CCCAGC	2 cut(s)	150, 652
PspGI	CCWGG	1 cut(s)	844
PspN4I	GGNNCC	2 cut(s)	492, 780
PspPI	GGNCC	1 cut(s)	148
PspXI	VCTCGAGB	1 cut(s)	465
PstI	CTGCAG	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	949
PvuII	CAGCTG	2 cut(s)	272, 740
RsaI	GTAC	9 cut(s)	428, 519, 702, 727, 733, 868, 877, 883, 889
RsaNI	GTAC	9 cut(s)	427, 518, 701, 726, 732, 867, 876, 882, 888
RseI	CAYNNNNRTG	1 cut(s)	576
SaqAI	TTAA	1 cut(s)	996
SatI	GCNGC	7 cut(s)	127, 273, 323, 721, 738, 975, 978
Sau96I	GGNCC	1 cut(s)	148
ScaI	AGTACT	4 cut(s)	727, 877, 883, 889
SchI	GAGTC	3 cut(s)	162, 371, 769
ScrFI	CCNGG	1 cut(s)	846
SduI	GDGCHC	2 cut(s)	485, 783
SfaNI	GCATC	3 cut(s)	233, 334, 515
SfcI	CTRYAG	3 cut(s)	71, 713, 963
Sfr274I	CTCGAG	1 cut(s)	465
SlaI	CTCGAG	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	576
SmlI	CTYRAG	2 cut(s)	143, 465
SmoI	CTYRAG	2 cut(s)	143, 465
SpeI	ACTAGT	4 cut(s)	728, 872, 878, 884
SphI	GCATGC	1 cut(s)	532
Sse9I	AATT	5 cut(s)	592, 598, 621, 669, 955
SsiI	CCGC	2 cut(s)	735, 988
SspMI	CTAG	7 cut(s)	21, 138, 365, 729, 873, 879, 885
StyD4I	CCNGG	1 cut(s)	844
StyI	CCWWGG	2 cut(s)	444, 486
TaaI	ACNGT	1 cut(s)	964
TaiI	ACGT	2 cut(s)	933, 1018
TaqI	TCGA	2 cut(s)	171, 466
TasI	AATT	5 cut(s)	592, 598, 621, 669, 955
TatI	WGTACW	5 cut(s)	700, 725, 875, 881, 887
TfiI	GAWTC	1 cut(s)	105
Tru1I	TTAA	1 cut(s)	996
Tru9I	TTAA	1 cut(s)	996
TscAI	CASTG	2 cut(s)	80, 967
TseFI	GTSAC	2 cut(s)	329, 439
TseI	GCWGC	7 cut(s)	126, 272, 322, 720, 737, 974, 977
Tsp45I	GTSAC	2 cut(s)	329, 439
TspDTI	ATGAA	5 cut(s)	108, 576, 615, 621, 627
TspRI	CASTG	2 cut(s)	80, 967
XapI	RAATTY	1 cut(s)	955
XceI	RCATGY	1 cut(s)	532
XhoI	CTCGAG	1 cut(s)	465
XmiI	GTMKAC	1 cut(s)	134
XmnI	GAANNNNTTC	1 cut(s)	622
XspI	CTAG	7 cut(s)	21, 138, 365, 729, 873, 879, 885
ZrmI	AGTACT	4 cut(s)	727, 877, 883, 889
Zsp2I	ATGCAT	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.