Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001184.1

Orthogroup ID

OG0011531

Physical Location & Seq

Genomic Coordinates Forward (+)

28308 .. 29637

Gene Structure 1330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001184.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

atggagtatcctcatacctctagcaaagaaaagcaggttgatcagcagggagatagtctggaagcagacctgcaatgtgtgcgaaaagagaatgaagctctaagattcctacttgaagctatgagcagcaagtacactagacttcaggcccagctccaactgatccgactcgatctccaacaaaacaagtcttcaacacacgatgatcatgatcatcatgagatgactactactggatcaggatgctcatcatatgatatttttgatccaactacaaacaagagggtaagaacaactgcttttgctcattgtgatcaccagcagcatcatcactttccagtagccaataagacatcgcagttcctagtgagaaccgactctaaagacaacacccttattgtgaaagatggatatcaatggaggaagtacgggcagaaggtgaccaaggacaacccatcatcccctcgagcttatttcaggtgctccatggctccaacttgcccagtcaaaaagaaggtacagagatgcatgcaggacaagtcaatccttgtggcaacatatgaaggccaccacaaccatgacatcatcaataattctaattccctactgcttggacaaataatttcatcttcatcttcatcaccaccagccccagctcttcataatcaaattatgtctgttgattttcctccagcagtagtacatggattgctacagagcagcagtactagtaccgcagctgaccctattactatgaggagtcctccttctcggcgggagcctatcacgcttgatcttactctctccggctctaaatccaaatccaaatccaatcaagaagagaacagaccaggacgaggaagccctgctggtactactagtactagtactagtactactgatcagacctgtgaaaatgagaaaatacaagaatacgttacttatctaaccaaagatccgaatttcactgtagctttagctgctgctgttgcccgctccattaaaactgatcaacctgcacgtaacccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002237 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

343

Amino Acids

38.16

Weight (kDa)

8.58

Isoelectric Point (pI)

52.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011531)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g41070 FvH4_2g41070 FvH4_2g41070
malus_domestica	MD00G1143600.v1.1 MD15G1039600.v1.1
prunus_persica	Prupe.1G393100_v2.0.a1
pyrus_communis	pycom08g04720 pycom08g04730 pycom08g04740 pycom15g03700
rosa_chinensis	RchiOBHm_Chr6g0299481
rosa_laevigata	RLG00000011428
rosa_multiflora	Rmu_sc0001184.1_g000007
rosa_roxburghii	Rroxscaffold_7G00168640
rosa_rugosa	Rorug06G0289100
rosa_samantha	Rh6AG400400 Rh6BG409100 Rh6CG414600 Rh6DG401500
rosa_wichuraiana	Rw6G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	25, 78, 1024
AccBSI	CCGCTC	1 cut(s)	996
AciI	CCGC	3 cut(s)	735, 775, 994
AclWI	GGATC	4 cut(s)	157, 244, 260, 950
AcsI	RAATTY	1 cut(s)	961
AcuI	CTGAAG	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	857
AgsI	TTSAA	2 cut(s)	116, 195
AhlI	ACTAGT	4 cut(s)	728, 878, 884, 890
AjnI	CCWGG	1 cut(s)	850
AluBI	AGCT	8 cut(s)	98, 119, 154, 470, 656, 740, 974, 980
AluI	AGCT	8 cut(s)	98, 119, 154, 470, 656, 740, 974, 980
Alw21I	GWGCWC	1 cut(s)	485
AlwI	GGATC	4 cut(s)	157, 244, 260, 950
Ama87I	CYCGRG	1 cut(s)	465
AoxI	GGCC	2 cut(s)	147, 565
ApeKI	GCWGC	6 cut(s)	126, 322, 720, 737, 980, 983
ApoI	RAATTY	1 cut(s)	961
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	3 cut(s)	308, 451, 633
AvaI	CYCGRG	1 cut(s)	465
BbsI	GAAGAC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	485
BbvI	GCAGC	6 cut(s)	138, 334, 732, 749, 967, 970
BccI	CCATC	2 cut(s)	401, 463
BciT130I	CCWGG	1 cut(s)	852
BciVI	GTATCC	1 cut(s)	18
BclI	TGATCA	6 cut(s)	40, 205, 211, 313, 901, 1009
BcuI	ACTAGT	4 cut(s)	728, 878, 884, 890
BfaI	CTAG	7 cut(s)	21, 138, 365, 729, 879, 885, 891
BfmI	CTRYAG	2 cut(s)	713, 969
BfuAI	ACCTGC	3 cut(s)	25, 78, 1024
BfuI	GTATCC	1 cut(s)	18
BisI	GCNGC	6 cut(s)	127, 323, 721, 738, 981, 984
BlsI	GCNGC	6 cut(s)	128, 324, 722, 739, 982, 985
BmcAI	AGTACT	4 cut(s)	727, 883, 889, 895
Bme1390I	CCNGG	1 cut(s)	852
BmeT110I	CYCGRG	1 cut(s)	465
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	2 cut(s)	492, 780
BmrFI	CCNGG	1 cut(s)	852
BmrI	ACTGGG	1 cut(s)	497
BmsI	GCATC	3 cut(s)	233, 334, 515
BmuI	ACTGGG	1 cut(s)	497
BpiI	GAAGAC	1 cut(s)	183
BplI	GAGNNNNNCTC	2 cut(s)	748, 780
BpmI	CTGGAG	1 cut(s)	675
BsaAI	YACGTR	1 cut(s)	1022
BsaBI	GATNNNNATC	3 cut(s)	210, 247, 411
BsaJI	CCNNGG	2 cut(s)	444, 486
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bsc4I	CCNNNNNNNGG	1 cut(s)	857
Bse1I	ACTGG	3 cut(s)	238, 338, 503
Bse3DI	GCAATG	1 cut(s)	80
Bse8I	GATNNNNATC	3 cut(s)	210, 247, 411
BseBI	CCWGG	1 cut(s)	852
BseDI	CCNNGG	2 cut(s)	444, 486
BseGI	GGATG	2 cut(s)	248, 458
BseJI	GATNNNNATC	3 cut(s)	210, 247, 411
BseLI	CCNNNNNNNGG	1 cut(s)	857
BseMI	GCAATG	1 cut(s)	80
BseNI	ACTGG	3 cut(s)	238, 338, 503
BseRI	GAGGAG	1 cut(s)	772
BseXI	GCAGC	6 cut(s)	138, 334, 732, 749, 967, 970
BseYI	CCCAGC	2 cut(s)	150, 652
BsgI	GTGCAG	1 cut(s)	1002
BshFI	GGCC	2 cut(s)	149, 567
BsiHKAI	GWGCWC	1 cut(s)	485
BsiHKCI	CYCGRG	1 cut(s)	465
BsiSI	CCGG	1 cut(s)	807
BslI	CCNNNNNNNGG	1 cut(s)	857
BsnI	GGCC	2 cut(s)	149, 567
BsoBI	CYCGRG	1 cut(s)	465
Bsp1286I	GDGCHC	1 cut(s)	485
Bsp19I	CCATGG	1 cut(s)	486
BspACI	CCGC	3 cut(s)	735, 775, 994
BspANI	GGCC	2 cut(s)	149, 567
BspHI	TCATGA	2 cut(s)	208, 217
BspLI	GGNNCC	2 cut(s)	492, 780
BspMI	ACCTGC	3 cut(s)	25, 78, 1024
BspPI	GGATC	4 cut(s)	157, 244, 260, 950
BspQI	GCTCTTC	1 cut(s)	663
BsrBI	CCGCTC	1 cut(s)	996
BsrDI	GCAATG	1 cut(s)	80
BsrI	ACTGG	3 cut(s)	238, 338, 503
BssECI	CCNNGG	2 cut(s)	444, 486
BssT1I	CCWWGG	2 cut(s)	444, 486
Bst2UI	CCWGG	1 cut(s)	852
Bst4CI	ACNGT	1 cut(s)	970
Bst6I	CTCTTC	2 cut(s)	663, 834
BstAPI	GCANNNNNTGC	1 cut(s)	79
BstBAI	YACGTR	1 cut(s)	1022
BstC8I	GCNNGC	2 cut(s)	530, 994
BstDEI	CTNAG	1 cut(s)	101
BstDSI	CCRYGG	1 cut(s)	486
BstEII	GGTNACC	1 cut(s)	439
BstF5I	GGATG	2 cut(s)	248, 458
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 787, 980, 989
BstNI	CCWGG	1 cut(s)	852
BstNSI	RCATGY	1 cut(s)	532
BstPI	GGTNACC	1 cut(s)	439
BstSCI	CCNGG	1 cut(s)	850
BstSFI	CTRYAG	2 cut(s)	713, 969
BstV1I	GCAGC	6 cut(s)	138, 334, 732, 749, 967, 970
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	955
BstYI	RGATCY	1 cut(s)	955
BsuI	GTATCC	1 cut(s)	18
BsuRI	GGCC	2 cut(s)	149, 567
BtgI	CCRYGG	1 cut(s)	486
BtgZI	GCGATG	1 cut(s)	339
BtsCI	GGATG	2 cut(s)	248, 458
BtsIMutI	CAGTG	1 cut(s)	966
BveI	ACCTGC	3 cut(s)	25, 78, 1024
Cac8I	GCNNGC	2 cut(s)	530, 994
CciI	TCATGA	2 cut(s)	208, 217
Cfr13I	GGNCC	1 cut(s)	148
CspCI	CAANNNNNGTGG	2 cut(s)	531, 566
CviAII	CATG	6 cut(s)	209, 218, 487, 529, 578, 704
DdeI	CTNAG	1 cut(s)	101
Eam1104I	CTCTTC	2 cut(s)	663, 834
EarI	CTCTTC	2 cut(s)	663, 834
Eco130I	CCWWGG	2 cut(s)	444, 486
Eco32I	GATATC	1 cut(s)	413
Eco57I	CTGAAG	1 cut(s)	128
Eco88I	CYCGRG	1 cut(s)	465
Eco91I	GGTNACC	1 cut(s)	439
EcoO65I	GGTNACC	1 cut(s)	439
EcoRII	CCWGG	1 cut(s)	850
EcoRV	GATATC	1 cut(s)	413
EcoT14I	CCWWGG	2 cut(s)	444, 486
EcoT22I	ATGCAT	1 cut(s)	530
ErhI	CCWWGG	2 cut(s)	444, 486
FaeI	CATG	6 cut(s)	212, 221, 490, 532, 581, 707
FatI	CATG	6 cut(s)	208, 217, 486, 528, 577, 703
FauI	CCCGC	2 cut(s)	768, 1001
FauNDI	CATATG	2 cut(s)	253, 559
FbaI	TGATCA	6 cut(s)	40, 205, 211, 313, 901, 1009
Fnu4HI	GCNGC	6 cut(s)	127, 323, 721, 738, 981, 984
FokI	GGATG	2 cut(s)	255, 445
Fsp4HI	GCNGC	6 cut(s)	127, 323, 721, 738, 981, 984
FspBI	CTAG	7 cut(s)	21, 138, 365, 729, 879, 885, 891
GluI	GCNGC	6 cut(s)	127, 323, 721, 738, 981, 984
GsaI	CCCAGC	2 cut(s)	154, 656
GsuI	CTGGAG	1 cut(s)	675
HaeIII	GGCC	2 cut(s)	149, 567
HapII	CCGG	1 cut(s)	807
Hin1II	CATG	6 cut(s)	212, 221, 490, 532, 581, 707
HinfI	GANTC	4 cut(s)	105, 168, 377, 760
HpaII	CCGG	1 cut(s)	807
HphI	GGTGA	3 cut(s)	308, 451, 633
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	3 cut(s)	167, 906, 960
Hpy188III	TCNNGA	5 cut(s)	59, 209, 218, 240, 836
Hpy8I	GTNNAC	1 cut(s)	135
HpyAV	CCTTC	4 cut(s)	430, 508, 557, 777
HpyCH4III	ACNGT	1 cut(s)	970
HpyCH4IV	ACGT	2 cut(s)	936, 1021
HpyCH4V	TGCA	4 cut(s)	73, 528, 532, 1019
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 787, 980, 989
HpyF3I	CTNAG	1 cut(s)	101
HpySE526I	ACGT	2 cut(s)	936, 1021
Hsp92II	CATG	6 cut(s)	212, 221, 490, 532, 581, 707
Ksp22I	TGATCA	6 cut(s)	40, 205, 211, 313, 901, 1009
LguI	GCTCTTC	1 cut(s)	663
LmnI	GCTCC	5 cut(s)	159, 488, 496, 778, 1001
Lsp1109I	GCAGC	6 cut(s)	138, 334, 732, 749, 967, 970
LweI	GCATC	3 cut(s)	233, 334, 515
MaeI	CTAG	7 cut(s)	21, 138, 365, 729, 879, 885, 891
MaeII	ACGT	2 cut(s)	936, 1021
MaeIII	GTNAC	3 cut(s)	439, 937, 1022
MbiI	CCGCTC	1 cut(s)	996
MboII	GAAGA	5 cut(s)	183, 621, 627, 650, 851
MflI	RGATCY	1 cut(s)	955
MhlI	GDGCHC	1 cut(s)	485
MluCI	AATT	5 cut(s)	592, 598, 621, 669, 961
MlyI	GAGTC	3 cut(s)	162, 371, 769
MmeI	TCCRAC	5 cut(s)	181, 190, 202, 293, 518
MnlI	CCTC	9 cut(s)	21, 28, 276, 414, 474, 699, 750, 774, 851
Mph1103I	ATGCAT	1 cut(s)	530
MseI	TTAA	1 cut(s)	1002
MslI	CAYNNNNRTG	1 cut(s)	576
MspA1I	CMGCKG	1 cut(s)	740
MspI	CCGG	1 cut(s)	807
MspR9I	CCNGG	1 cut(s)	852
MvaI	CCWGG	1 cut(s)	852
MwoI	GCNNNNNNNGC	4 cut(s)	79, 787, 980, 989
NcoI	CCATGG	1 cut(s)	486
NdeI	CATATG	2 cut(s)	253, 559
NlaIII	CATG	6 cut(s)	212, 221, 490, 532, 581, 707
NlaIV	GGNNCC	2 cut(s)	492, 780
NmeAIII	GCCGAG	1 cut(s)	751
NmuCI	GTSAC	1 cut(s)	439
NsiI	ATGCAT	1 cut(s)	530
NspI	RCATGY	1 cut(s)	532
PaeI	GCATGC	1 cut(s)	532
PaeR7I	CTCGAG	1 cut(s)	465
PagI	TCATGA	2 cut(s)	208, 217
PciSI	GCTCTTC	1 cut(s)	663
PfeI	GAWTC	1 cut(s)	105
PkrI	GCNGC	6 cut(s)	128, 324, 722, 739, 982, 985
PleI	GAGTC	3 cut(s)	162, 371, 768
PpsI	GAGTC	3 cut(s)	162, 371, 768
Ppu21I	YACGTR	1 cut(s)	1022
Psp6I	CCWGG	1 cut(s)	850
PspEI	GGTNACC	1 cut(s)	439
PspFI	CCCAGC	2 cut(s)	150, 652
PspGI	CCWGG	1 cut(s)	850
PspN4I	GGNNCC	2 cut(s)	492, 780
PspPI	GGNCC	1 cut(s)	148
PspXI	VCTCGAGB	1 cut(s)	465
PsuI	RGATCY	1 cut(s)	955
PvuII	CAGCTG	1 cut(s)	740
RseI	CAYNNNNRTG	1 cut(s)	576
SapI	GCTCTTC	1 cut(s)	663
SaqAI	TTAA	1 cut(s)	1002
SatI	GCNGC	6 cut(s)	127, 323, 721, 738, 981, 984
Sau96I	GGNCC	1 cut(s)	148
ScaI	AGTACT	4 cut(s)	727, 883, 889, 895
SchI	GAGTC	3 cut(s)	162, 371, 769
ScrFI	CCNGG	1 cut(s)	852
SduI	GDGCHC	1 cut(s)	485
SfaNI	GCATC	3 cut(s)	233, 334, 515
SfcI	CTRYAG	2 cut(s)	713, 969
Sfr274I	CTCGAG	1 cut(s)	465
SlaI	CTCGAG	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	576
SmlI	CTYRAG	1 cut(s)	465
SmoI	CTYRAG	1 cut(s)	465
SpeI	ACTAGT	4 cut(s)	728, 878, 884, 890
SphI	GCATGC	1 cut(s)	532
Sse9I	AATT	5 cut(s)	592, 598, 621, 669, 961
SsiI	CCGC	3 cut(s)	735, 775, 994
SspMI	CTAG	7 cut(s)	21, 138, 365, 729, 879, 885, 891
StyD4I	CCNGG	1 cut(s)	850
StyI	CCWWGG	2 cut(s)	444, 486
TaaI	ACNGT	1 cut(s)	970
TaiI	ACGT	2 cut(s)	939, 1024
TaqI	TCGA	2 cut(s)	171, 466
TasI	AATT	5 cut(s)	592, 598, 621, 669, 961
TatI	WGTACW	6 cut(s)	132, 700, 725, 881, 887, 893
TfiI	GAWTC	1 cut(s)	105
Tru1I	TTAA	1 cut(s)	1002
Tru9I	TTAA	1 cut(s)	1002
TscAI	CASTG	1 cut(s)	973
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	6 cut(s)	126, 322, 720, 737, 980, 983
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	6 cut(s)	108, 576, 615, 621, 627, 650
TspRI	CASTG	1 cut(s)	973
XapI	RAATTY	1 cut(s)	961
XceI	RCATGY	1 cut(s)	532
XhoI	CTCGAG	1 cut(s)	465
XspI	CTAG	7 cut(s)	21, 138, 365, 729, 879, 885, 891
ZrmI	AGTACT	4 cut(s)	727, 883, 889, 895
Zsp2I	ATGCAT	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.