Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0011531

Physical Location & Seq

Genomic Coordinates Reverse (-)

63464957 .. 63467198

Gene Structure 2242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG409100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGAGTATCCTCATACCTCTAGCAAAGAAAAGCAGGTTGATCAGCAGGGAGATAGTCTGGAAGCAGACCTGCAATGTGTGCGAAAAGAGAATGAAGCTCTAAGATTCCTACTTGAAGCTATGAGCAGCAAGTACACTAGACTTGAGACCCAGCTCCAACTGATCCGACTCGAACTCCAACAAAACAAGTCTTCAACACACGATGATCATGATCATCATGAGATGACTACTACTGGCTCAGGATGCTCATCATATGATATTTTTGATCCAACTGCAAACAAGAGGGCAAGAACAACTGCTTTTGCTCATTGTGATCACCAGCAGCATCATCACTTTCCAGTAGCTAATAAGACATCGCAGTTCCTAGTGAAAACCGACTCTAAAGACAAATCCCTTATTGTGAAAGATGGATATCAATGGAGGAAGTACGGGCAGAAGGTGACCAAGGACAACCCATCATCCCCTCGAGCTTATTTCAGGTGCTCCATGGCTCCAACTTGCCCAGTCAAAAAGAAGGTACAGAGATGCATGCAGGACAAGTCAATCCTTGTGGCAACATATGAAGGCCACCACAACCATGATATCATCAATAATTCTAATTCCCTACTGCTTGGGCAAATAATTTCATCTTCATCTTCATCACCACCAGCCCCAGCTCCTCATTATCAAATTATGTCTGTTGATTTTCCTCCAGCAGCAGTACATGGATTGCTACAGAGCAGCAGTACTAGTACCGCAGCTGACCCTATTACTATGAGGAGTCCTCCTTCTCAGCCGGAGCCTATCACGCTTGATCTTACTCTCTCCGGCTCTAAATCCAAATCCAATCAAGAAGAGAACAGACCAGGACGAGGAAGCCCTGCTGGTACTACTAGTACTAGTACTACTGATCAGACCTGTGAAAATGAGAAAATACAAGAATACGTTACTTATCTAACCAAAGATCCGAATTTCACTGTAGCTTTAGCTGCTGCTGTTGCCCGCTCCATTAAAACTGATCAACCTGCACGTAACCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002237 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

339

Amino Acids

37.63

Weight (kDa)

7.68

Isoelectric Point (pI)

52.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	135 - 194	5.2e-23	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011531)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g41070 FvH4_2g41070 FvH4_2g41070
malus_domestica	MD00G1143600.v1.1 MD15G1039600.v1.1
prunus_persica	Prupe.1G393100_v2.0.a1
pyrus_communis	pycom08g04720 pycom08g04730 pycom08g04740 pycom15g03700
rosa_chinensis	RchiOBHm_Chr6g0299481
rosa_laevigata	RLG00000011428
rosa_multiflora	Rmu_sc0001184.1_g000007
rosa_roxburghii	Rroxscaffold_7G00168640
rosa_rugosa	Rorug06G0289100
rosa_samantha	Rh6AG400400 Rh6BG409100 Rh6CG414600 Rh6DG401500
rosa_wichuraiana	Rw6G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	25, 78, 1012
AccBSI	CCGCTC	1 cut(s)	984
AciI	CCGC	2 cut(s)	735, 982
AclWI	GGATC	3 cut(s)	157, 260, 938
AcsI	RAATTY	1 cut(s)	949
AfaI	GTAC	9 cut(s)	134, 428, 519, 702, 727, 733, 868, 877, 883
AfiI	CCNNNNNNNGG	1 cut(s)	851
AgsI	TTSAA	2 cut(s)	116, 195
AhlI	ACTAGT	3 cut(s)	728, 872, 878
AjnI	CCWGG	1 cut(s)	844
AluBI	AGCT	9 cut(s)	98, 119, 154, 344, 470, 656, 740, 962, 968
AluI	AGCT	9 cut(s)	98, 119, 154, 344, 470, 656, 740, 962, 968
Alw21I	GWGCWC	1 cut(s)	485
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	3 cut(s)	157, 260, 938
Ama87I	CYCGRG	1 cut(s)	465
AoxI	GGCC	1 cut(s)	565
ApeKI	GCWGC	7 cut(s)	126, 322, 695, 720, 737, 968, 971
ApoI	RAATTY	1 cut(s)	949
AsuHPI	GGTGA	3 cut(s)	308, 451, 633
AvaI	CYCGRG	1 cut(s)	465
BbsI	GAAGAC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	485
BbvI	GCAGC	7 cut(s)	138, 334, 707, 732, 749, 955, 958
BccI	CCATC	2 cut(s)	401, 463
BciT130I	CCWGG	1 cut(s)	846
BciVI	GTATCC	1 cut(s)	18
BclI	TGATCA	6 cut(s)	40, 205, 211, 313, 889, 997
BcoDI	GTCTC	1 cut(s)	140
BcuI	ACTAGT	3 cut(s)	728, 872, 878
BfaI	CTAG	6 cut(s)	21, 138, 365, 729, 873, 879
BfmI	CTRYAG	2 cut(s)	713, 957
BfuAI	ACCTGC	3 cut(s)	25, 78, 1012
BfuI	GTATCC	1 cut(s)	18
BisI	GCNGC	7 cut(s)	127, 323, 696, 721, 738, 969, 972
BlsI	GCNGC	7 cut(s)	128, 324, 697, 722, 739, 970, 973
BmcAI	AGTACT	3 cut(s)	727, 877, 883
Bme1390I	CCNGG	1 cut(s)	846
BmeT110I	CYCGRG	1 cut(s)	465
BmiI	GGNNCC	2 cut(s)	492, 780
BmrFI	CCNGG	1 cut(s)	846
BmrI	ACTGGG	1 cut(s)	497
BmsI	GCATC	3 cut(s)	233, 334, 515
BmuI	ACTGGG	1 cut(s)	497
BpiI	GAAGAC	1 cut(s)	183
BplI	GAGNNNNNCTC	2 cut(s)	748, 780
BpmI	CTGGAG	1 cut(s)	675
Bpu10I	CCTNAGC	1 cut(s)	238
BpuEI	CTTGAG	1 cut(s)	164
BsaAI	YACGTR	1 cut(s)	1010
BsaBI	GATNNNNATC	3 cut(s)	210, 247, 411
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	444, 486
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bsc4I	CCNNNNNNNGG	1 cut(s)	851
Bse1I	ACTGG	3 cut(s)	238, 338, 503
Bse3DI	GCAATG	1 cut(s)	80
Bse8I	GATNNNNATC	3 cut(s)	210, 247, 411
BseBI	CCWGG	1 cut(s)	846
BseDI	CCNNGG	2 cut(s)	444, 486
BseGI	GGATG	2 cut(s)	248, 458
BseJI	GATNNNNATC	3 cut(s)	210, 247, 411
BseLI	CCNNNNNNNGG	1 cut(s)	851
BseMI	GCAATG	1 cut(s)	80
BseMII	CTCAG	2 cut(s)	252, 785
BseNI	ACTGG	3 cut(s)	238, 338, 503
BseRI	GAGGAG	2 cut(s)	648, 772
BseXI	GCAGC	7 cut(s)	138, 334, 707, 732, 749, 955, 958
BseYI	CCCAGC	2 cut(s)	150, 652
BsgI	GTGCAG	1 cut(s)	990
BshFI	GGCC	1 cut(s)	567
BsiHKAI	GWGCWC	1 cut(s)	485
BsiHKCI	CYCGRG	1 cut(s)	465
BsiSI	CCGG	2 cut(s)	776, 807
BslI	CCNNNNNNNGG	1 cut(s)	851
BsmAI	GTCTC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	567
Bso31I	GGTCTC	1 cut(s)	140
BsoBI	CYCGRG	1 cut(s)	465
Bsp1286I	GDGCHC	1 cut(s)	485
Bsp19I	CCATGG	1 cut(s)	486
BspACI	CCGC	2 cut(s)	735, 982
BspANI	GGCC	1 cut(s)	567
BspCNI	CTCAG	2 cut(s)	251, 784
BspHI	TCATGA	2 cut(s)	208, 217
BspLI	GGNNCC	2 cut(s)	492, 780
BspMI	ACCTGC	3 cut(s)	25, 78, 1012
BspPI	GGATC	3 cut(s)	157, 260, 938
BspTNI	GGTCTC	1 cut(s)	140
BsrBI	CCGCTC	1 cut(s)	984
BsrDI	GCAATG	1 cut(s)	80
BsrI	ACTGG	3 cut(s)	238, 338, 503
BssECI	CCNNGG	2 cut(s)	444, 486
BssT1I	CCWWGG	2 cut(s)	444, 486
Bst2UI	CCWGG	1 cut(s)	846
Bst4CI	ACNGT	1 cut(s)	958
Bst6I	CTCTTC	1 cut(s)	828
BstAPI	GCANNNNNTGC	1 cut(s)	79
BstBAI	YACGTR	1 cut(s)	1010
BstC8I	GCNNGC	2 cut(s)	530, 982
BstDEI	CTNAG	3 cut(s)	101, 238, 771
BstDSI	CCRYGG	1 cut(s)	486
BstEII	GGTNACC	1 cut(s)	439
BstF5I	GGATG	2 cut(s)	248, 458
BstMAI	GTCTC	1 cut(s)	140
BstMWI	GCNNNNNNNGC	5 cut(s)	79, 243, 787, 968, 977
BstNI	CCWGG	1 cut(s)	846
BstNSI	RCATGY	1 cut(s)	532
BstPI	GGTNACC	1 cut(s)	439
BstSCI	CCNGG	1 cut(s)	844
BstSFI	CTRYAG	2 cut(s)	713, 957
BstV1I	GCAGC	7 cut(s)	138, 334, 707, 732, 749, 955, 958
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	943
BstYI	RGATCY	1 cut(s)	943
BsuI	GTATCC	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	567
BtgI	CCRYGG	1 cut(s)	486
BtgZI	GCGATG	1 cut(s)	339
BtsCI	GGATG	2 cut(s)	248, 458
BtsIMutI	CAGTG	1 cut(s)	954
BveI	ACCTGC	3 cut(s)	25, 78, 1012
Cac8I	GCNNGC	2 cut(s)	530, 982
CciI	TCATGA	2 cut(s)	208, 217
Csp6I	GTAC	9 cut(s)	133, 427, 518, 701, 726, 732, 867, 876, 882
CspCI	CAANNNNNGTGG	2 cut(s)	531, 566
CviAII	CATG	6 cut(s)	209, 218, 487, 529, 578, 704
CviQI	GTAC	9 cut(s)	133, 427, 518, 701, 726, 732, 867, 876, 882
DdeI	CTNAG	3 cut(s)	101, 238, 771
Eam1104I	CTCTTC	1 cut(s)	828
EarI	CTCTTC	1 cut(s)	828
Eco130I	CCWWGG	2 cut(s)	444, 486
Eco31I	GGTCTC	1 cut(s)	140
Eco32I	GATATC	2 cut(s)	413, 583
Eco88I	CYCGRG	1 cut(s)	465
Eco91I	GGTNACC	1 cut(s)	439
EcoO65I	GGTNACC	1 cut(s)	439
EcoRII	CCWGG	1 cut(s)	844
EcoRV	GATATC	2 cut(s)	413, 583
EcoT14I	CCWWGG	2 cut(s)	444, 486
EcoT22I	ATGCAT	1 cut(s)	530
ErhI	CCWWGG	2 cut(s)	444, 486
FaeI	CATG	6 cut(s)	212, 221, 490, 532, 581, 707
FatI	CATG	6 cut(s)	208, 217, 486, 528, 577, 703
FauI	CCCGC	1 cut(s)	989
FauNDI	CATATG	2 cut(s)	253, 559
FbaI	TGATCA	6 cut(s)	40, 205, 211, 313, 889, 997
Fnu4HI	GCNGC	7 cut(s)	127, 323, 696, 721, 738, 969, 972
FokI	GGATG	2 cut(s)	255, 445
Fsp4HI	GCNGC	7 cut(s)	127, 323, 696, 721, 738, 969, 972
FspBI	CTAG	6 cut(s)	21, 138, 365, 729, 873, 879
GluI	GCNGC	7 cut(s)	127, 323, 696, 721, 738, 969, 972
GsaI	CCCAGC	2 cut(s)	154, 656
GsuI	CTGGAG	1 cut(s)	675
HaeIII	GGCC	1 cut(s)	567
HapII	CCGG	2 cut(s)	776, 807
Hin1II	CATG	6 cut(s)	212, 221, 490, 532, 581, 707
HinfI	GANTC	4 cut(s)	105, 168, 377, 760
HpaII	CCGG	2 cut(s)	776, 807
HphI	GGTGA	3 cut(s)	308, 451, 633
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	3 cut(s)	167, 894, 948
Hpy188III	TCNNGA	5 cut(s)	59, 209, 218, 240, 830
Hpy8I	GTNNAC	1 cut(s)	135
HpyAV	CCTTC	4 cut(s)	430, 508, 557, 777
HpyCH4III	ACNGT	1 cut(s)	958
HpyCH4IV	ACGT	2 cut(s)	924, 1009
HpyCH4V	TGCA	5 cut(s)	73, 275, 528, 532, 1007
HpyF10VI	GCNNNNNNNGC	5 cut(s)	79, 243, 787, 968, 977
HpyF3I	CTNAG	3 cut(s)	101, 238, 771
HpySE526I	ACGT	2 cut(s)	924, 1009
Hsp92II	CATG	6 cut(s)	212, 221, 490, 532, 581, 707
Ksp22I	TGATCA	6 cut(s)	40, 205, 211, 313, 889, 997
LmnI	GCTCC	6 cut(s)	159, 488, 496, 661, 778, 989
Lsp1109I	GCAGC	7 cut(s)	138, 334, 707, 732, 749, 955, 958
LweI	GCATC	3 cut(s)	233, 334, 515
MaeI	CTAG	6 cut(s)	21, 138, 365, 729, 873, 879
MaeII	ACGT	2 cut(s)	924, 1009
MaeIII	GTNAC	3 cut(s)	439, 925, 1010
MbiI	CCGCTC	1 cut(s)	984
MboII	GAAGA	4 cut(s)	183, 621, 627, 845
MflI	RGATCY	1 cut(s)	943
MhlI	GDGCHC	1 cut(s)	485
MluCI	AATT	5 cut(s)	592, 598, 621, 669, 949
MlyI	GAGTC	3 cut(s)	162, 371, 769
MmeI	TCCRAC	5 cut(s)	181, 190, 202, 293, 518
Mph1103I	ATGCAT	1 cut(s)	530
MseI	TTAA	1 cut(s)	990
MslI	CAYNNNNRTG	1 cut(s)	576
MspA1I	CMGCKG	1 cut(s)	740
MspI	CCGG	2 cut(s)	776, 807
MspR9I	CCNGG	1 cut(s)	846
MvaI	CCWGG	1 cut(s)	846
MwoI	GCNNNNNNNGC	5 cut(s)	79, 243, 787, 968, 977
NcoI	CCATGG	1 cut(s)	486
NdeI	CATATG	2 cut(s)	253, 559
NlaIII	CATG	6 cut(s)	212, 221, 490, 532, 581, 707
NlaIV	GGNNCC	2 cut(s)	492, 780
NmuCI	GTSAC	1 cut(s)	439
NsiI	ATGCAT	1 cut(s)	530
NspI	RCATGY	1 cut(s)	532
PaeI	GCATGC	1 cut(s)	532
PaeR7I	CTCGAG	1 cut(s)	465
PagI	TCATGA	2 cut(s)	208, 217
PfeI	GAWTC	1 cut(s)	105
PkrI	GCNGC	7 cut(s)	128, 324, 697, 722, 739, 970, 973
PleI	GAGTC	3 cut(s)	162, 371, 768
PpsI	GAGTC	3 cut(s)	162, 371, 768
Ppu21I	YACGTR	1 cut(s)	1010
Psp6I	CCWGG	1 cut(s)	844
PspEI	GGTNACC	1 cut(s)	439
PspFI	CCCAGC	2 cut(s)	150, 652
PspGI	CCWGG	1 cut(s)	844
PspN4I	GGNNCC	2 cut(s)	492, 780
PspXI	VCTCGAGB	1 cut(s)	465
PsuI	RGATCY	1 cut(s)	943
PvuII	CAGCTG	1 cut(s)	740
RsaI	GTAC	9 cut(s)	134, 428, 519, 702, 727, 733, 868, 877, 883
RsaNI	GTAC	9 cut(s)	133, 427, 518, 701, 726, 732, 867, 876, 882
RseI	CAYNNNNRTG	1 cut(s)	576
SaqAI	TTAA	1 cut(s)	990
SatI	GCNGC	7 cut(s)	127, 323, 696, 721, 738, 969, 972
ScaI	AGTACT	3 cut(s)	727, 877, 883
SchI	GAGTC	3 cut(s)	162, 371, 769
ScrFI	CCNGG	1 cut(s)	846
SduI	GDGCHC	1 cut(s)	485
SfaNI	GCATC	3 cut(s)	233, 334, 515
SfcI	CTRYAG	2 cut(s)	713, 957
Sfr274I	CTCGAG	1 cut(s)	465
SlaI	CTCGAG	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	576
SmlI	CTYRAG	2 cut(s)	143, 465
SmoI	CTYRAG	2 cut(s)	143, 465
SpeI	ACTAGT	3 cut(s)	728, 872, 878
SphI	GCATGC	1 cut(s)	532
Sse9I	AATT	5 cut(s)	592, 598, 621, 669, 949
SsiI	CCGC	2 cut(s)	735, 982
SspMI	CTAG	6 cut(s)	21, 138, 365, 729, 873, 879
StyD4I	CCNGG	1 cut(s)	844
StyI	CCWWGG	2 cut(s)	444, 486
TaaI	ACNGT	1 cut(s)	958
TaiI	ACGT	2 cut(s)	927, 1012
TaqI	TCGA	2 cut(s)	171, 466
TasI	AATT	5 cut(s)	592, 598, 621, 669, 949
TatI	WGTACW	5 cut(s)	132, 700, 725, 875, 881
TfiI	GAWTC	1 cut(s)	105
Tru1I	TTAA	1 cut(s)	990
Tru9I	TTAA	1 cut(s)	990
TscAI	CASTG	1 cut(s)	961
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	7 cut(s)	126, 322, 695, 720, 737, 968, 971
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	5 cut(s)	108, 576, 615, 621, 627
TspRI	CASTG	1 cut(s)	961
XapI	RAATTY	1 cut(s)	949
XceI	RCATGY	1 cut(s)	532
XhoI	CTCGAG	1 cut(s)	465
XspI	CTAG	6 cut(s)	21, 138, 365, 729, 873, 879
ZrmI	AGTACT	3 cut(s)	727, 877, 883
Zsp2I	ATGCAT	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.