Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0011531

Physical Location & Seq

Genomic Coordinates Reverse (-)

59903581 .. 59905710

Gene Structure 2130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG414600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGAGTATCCTCATACCTCTAGCAAAGAAAAGCAGGTTGATCAGCAGGGAGATAGTCTGGAAGCAGACCTGCAATGTGTGCGAAAAGAGAATGAAGCTCTAAGATTCCTACTTGAAGCTATGAGCAGCAAGTACACTAGACTTGAGGCCCAGCTCCAACTGATCCGACTCGATCTCCAACAAAACAAGTCTTCAACACACGATGATCATGATCATCATGAGATGACTACTACTGGATCAGGATGCTCATCATATGATATTTTTGATCCAACTGCAAACAAGAGGGCAAGAACAACTGCTTTTGCTCATTGTGATCACCAGCAGCATCATCACTTTCCAGTAGCCTATAAGACATCGCAGTTCCTAGTGAGAACCGACTCTAAAGACAACACCCTTATTGTGAAAGATGGATATCAATGGAGGAAGTACGGGCAGAAGGTGACCAAGGACAACCCATCATCCCCTCGAGCTTATTTCAGGTGCTCCATGGCTCCAACTTGCCCAGTCAAAAAGAAGGTACAGAGATGCATGCAGGACAAGTCAATCCTTGTGGCAACATATGAAGGCCACCACAACCATGACATCATCAATAATTCTAATTCCCTACTGCTTGGACAAATAATTTCATCTTCATCTTCATCACCACCAGCCCCAGCTCCTCATAATCAAATTATGTCTGTTGATTTTCCTCCAGCAGTAGTACATGGATTGCTACAGAGCAGCAGTACTAGTACCGCAGCTGACCCTATTACTATGAGGAGTCCTCCTTCTCGGCCGGAGCCTATCACGCTTGATCTTACTCTCTCCGGCTCTAAATCCAAATCCAATCAAGAAGAGAACAGACCAGGACGAGGAAGCCCTGCTGGTACTACTAGTACTACTGATCAGACCTGTGAAAATGAGAAAATACAAGAATACGTTACTTATCTAACCAAAGATCCGAATTTCACTGTAGCTTTAGCTGCTGCTGTTGCCCGCTCCATTAAAACTGATCAACCTGCACGTAACCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002237 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

337

Amino Acids

37.48

Weight (kDa)

7.69

Isoelectric Point (pI)

51.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	135 - 194	5.1e-23	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011531)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g41070 FvH4_2g41070 FvH4_2g41070
malus_domestica	MD00G1143600.v1.1 MD15G1039600.v1.1
prunus_persica	Prupe.1G393100_v2.0.a1
pyrus_communis	pycom08g04720 pycom08g04730 pycom08g04740 pycom15g03700
rosa_chinensis	RchiOBHm_Chr6g0299481
rosa_laevigata	RLG00000011428
rosa_multiflora	Rmu_sc0001184.1_g000007
rosa_roxburghii	Rroxscaffold_7G00168640
rosa_rugosa	Rorug06G0289100
rosa_samantha	Rh6AG400400 Rh6BG409100 Rh6CG414600 Rh6DG401500
rosa_wichuraiana	Rw6G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	25, 78, 1006
AccBSI	CCGCTC	1 cut(s)	978
AciI	CCGC	2 cut(s)	735, 976
AclWI	GGATC	4 cut(s)	157, 244, 260, 932
AcoI	YGGCCR	1 cut(s)	773
AcsI	RAATTY	1 cut(s)	943
AfaI	GTAC	8 cut(s)	134, 428, 519, 702, 727, 733, 868, 877
AfiI	CCNNNNNNNGG	1 cut(s)	851
AgsI	TTSAA	2 cut(s)	116, 195
AhlI	ACTAGT	2 cut(s)	728, 872
AjnI	CCWGG	1 cut(s)	844
AluBI	AGCT	8 cut(s)	98, 119, 154, 470, 656, 740, 956, 962
AluI	AGCT	8 cut(s)	98, 119, 154, 470, 656, 740, 956, 962
Alw21I	GWGCWC	1 cut(s)	485
AlwI	GGATC	4 cut(s)	157, 244, 260, 932
Ama87I	CYCGRG	1 cut(s)	465
AoxI	GGCC	3 cut(s)	147, 565, 773
ApeKI	GCWGC	6 cut(s)	126, 322, 720, 737, 962, 965
ApoI	RAATTY	1 cut(s)	943
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	3 cut(s)	308, 451, 633
AvaI	CYCGRG	1 cut(s)	465
BbsI	GAAGAC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	485
BbvI	GCAGC	6 cut(s)	138, 334, 732, 749, 949, 952
BccI	CCATC	2 cut(s)	401, 463
BciT130I	CCWGG	1 cut(s)	846
BciVI	GTATCC	1 cut(s)	18
BclI	TGATCA	6 cut(s)	40, 205, 211, 313, 883, 991
BcuI	ACTAGT	2 cut(s)	728, 872
BfaI	CTAG	5 cut(s)	21, 138, 365, 729, 873
BfmI	CTRYAG	2 cut(s)	713, 951
BfuAI	ACCTGC	3 cut(s)	25, 78, 1006
BfuI	GTATCC	1 cut(s)	18
BisI	GCNGC	6 cut(s)	127, 323, 721, 738, 963, 966
BlsI	GCNGC	6 cut(s)	128, 324, 722, 739, 964, 967
BmcAI	AGTACT	2 cut(s)	727, 877
Bme1390I	CCNGG	1 cut(s)	846
BmeT110I	CYCGRG	1 cut(s)	465
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	2 cut(s)	492, 780
BmrFI	CCNGG	1 cut(s)	846
BmrI	ACTGGG	1 cut(s)	497
BmsI	GCATC	3 cut(s)	233, 334, 515
BmuI	ACTGGG	1 cut(s)	497
BpiI	GAAGAC	1 cut(s)	183
BplI	GAGNNNNNCTC	2 cut(s)	748, 780
BpmI	CTGGAG	1 cut(s)	675
BpuEI	CTTGAG	1 cut(s)	164
BsaAI	YACGTR	1 cut(s)	1004
BsaBI	GATNNNNATC	3 cut(s)	210, 247, 411
BsaJI	CCNNGG	2 cut(s)	444, 486
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bsc4I	CCNNNNNNNGG	1 cut(s)	851
Bse1I	ACTGG	3 cut(s)	238, 338, 503
Bse3DI	GCAATG	1 cut(s)	80
Bse8I	GATNNNNATC	3 cut(s)	210, 247, 411
BseBI	CCWGG	1 cut(s)	846
BseDI	CCNNGG	2 cut(s)	444, 486
BseGI	GGATG	2 cut(s)	248, 458
BseJI	GATNNNNATC	3 cut(s)	210, 247, 411
BseLI	CCNNNNNNNGG	1 cut(s)	851
BseMI	GCAATG	1 cut(s)	80
BseNI	ACTGG	3 cut(s)	238, 338, 503
BseRI	GAGGAG	2 cut(s)	648, 772
BseX3I	CGGCCG	1 cut(s)	773
BseXI	GCAGC	6 cut(s)	138, 334, 732, 749, 949, 952
BseYI	CCCAGC	2 cut(s)	150, 652
BsgI	GTGCAG	1 cut(s)	984
Bsh1285I	CGRYCG	1 cut(s)	776
BshFI	GGCC	3 cut(s)	149, 567, 775
BsiEI	CGRYCG	1 cut(s)	776
BsiHKAI	GWGCWC	1 cut(s)	485
BsiHKCI	CYCGRG	1 cut(s)	465
BsiSI	CCGG	2 cut(s)	776, 807
BslI	CCNNNNNNNGG	1 cut(s)	851
BsnI	GGCC	3 cut(s)	149, 567, 775
BsoBI	CYCGRG	1 cut(s)	465
Bsp1286I	GDGCHC	1 cut(s)	485
Bsp19I	CCATGG	1 cut(s)	486
BspACI	CCGC	2 cut(s)	735, 976
BspANI	GGCC	3 cut(s)	149, 567, 775
BspHI	TCATGA	2 cut(s)	208, 217
BspLI	GGNNCC	2 cut(s)	492, 780
BspMI	ACCTGC	3 cut(s)	25, 78, 1006
BspPI	GGATC	4 cut(s)	157, 244, 260, 932
BsrBI	CCGCTC	1 cut(s)	978
BsrDI	GCAATG	1 cut(s)	80
BsrI	ACTGG	3 cut(s)	238, 338, 503
BssECI	CCNNGG	2 cut(s)	444, 486
BssT1I	CCWWGG	2 cut(s)	444, 486
Bst2UI	CCWGG	1 cut(s)	846
Bst4CI	ACNGT	1 cut(s)	952
Bst6I	CTCTTC	1 cut(s)	828
BstAPI	GCANNNNNTGC	1 cut(s)	79
BstBAI	YACGTR	1 cut(s)	1004
BstC8I	GCNNGC	2 cut(s)	530, 976
BstDEI	CTNAG	1 cut(s)	101
BstDSI	CCRYGG	1 cut(s)	486
BstEII	GGTNACC	1 cut(s)	439
BstF5I	GGATG	2 cut(s)	248, 458
BstMCI	CGRYCG	1 cut(s)	776
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 787, 962, 971
BstNI	CCWGG	1 cut(s)	846
BstNSI	RCATGY	1 cut(s)	532
BstPI	GGTNACC	1 cut(s)	439
BstSCI	CCNGG	1 cut(s)	844
BstSFI	CTRYAG	2 cut(s)	713, 951
BstV1I	GCAGC	6 cut(s)	138, 334, 732, 749, 949, 952
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	937
BstYI	RGATCY	1 cut(s)	937
BstZI	CGGCCG	1 cut(s)	773
BsuI	GTATCC	1 cut(s)	18
BsuRI	GGCC	3 cut(s)	149, 567, 775
BtgI	CCRYGG	1 cut(s)	486
BtgZI	GCGATG	1 cut(s)	339
BtsCI	GGATG	2 cut(s)	248, 458
BtsIMutI	CAGTG	1 cut(s)	948
BveI	ACCTGC	3 cut(s)	25, 78, 1006
Cac8I	GCNNGC	2 cut(s)	530, 976
CciI	TCATGA	2 cut(s)	208, 217
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	8 cut(s)	133, 427, 518, 701, 726, 732, 867, 876
CspCI	CAANNNNNGTGG	2 cut(s)	531, 566
CviAII	CATG	6 cut(s)	209, 218, 487, 529, 578, 704
CviQI	GTAC	8 cut(s)	133, 427, 518, 701, 726, 732, 867, 876
DdeI	CTNAG	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	773
EagI	CGGCCG	1 cut(s)	773
Eam1104I	CTCTTC	1 cut(s)	828
EarI	CTCTTC	1 cut(s)	828
EclXI	CGGCCG	1 cut(s)	773
Eco130I	CCWWGG	2 cut(s)	444, 486
Eco32I	GATATC	1 cut(s)	413
Eco52I	CGGCCG	1 cut(s)	773
Eco88I	CYCGRG	1 cut(s)	465
Eco91I	GGTNACC	1 cut(s)	439
EcoO65I	GGTNACC	1 cut(s)	439
EcoRII	CCWGG	1 cut(s)	844
EcoRV	GATATC	1 cut(s)	413
EcoT14I	CCWWGG	2 cut(s)	444, 486
EcoT22I	ATGCAT	1 cut(s)	530
ErhI	CCWWGG	2 cut(s)	444, 486
FaeI	CATG	6 cut(s)	212, 221, 490, 532, 581, 707
FatI	CATG	6 cut(s)	208, 217, 486, 528, 577, 703
FauI	CCCGC	1 cut(s)	983
FauNDI	CATATG	2 cut(s)	253, 559
FbaI	TGATCA	6 cut(s)	40, 205, 211, 313, 883, 991
Fnu4HI	GCNGC	6 cut(s)	127, 323, 721, 738, 963, 966
FokI	GGATG	2 cut(s)	255, 445
Fsp4HI	GCNGC	6 cut(s)	127, 323, 721, 738, 963, 966
FspBI	CTAG	5 cut(s)	21, 138, 365, 729, 873
GluI	GCNGC	6 cut(s)	127, 323, 721, 738, 963, 966
GsaI	CCCAGC	2 cut(s)	154, 656
GsuI	CTGGAG	1 cut(s)	675
HaeIII	GGCC	3 cut(s)	149, 567, 775
HapII	CCGG	2 cut(s)	776, 807
Hin1II	CATG	6 cut(s)	212, 221, 490, 532, 581, 707
HinfI	GANTC	4 cut(s)	105, 168, 377, 760
HpaII	CCGG	2 cut(s)	776, 807
HphI	GGTGA	3 cut(s)	308, 451, 633
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	3 cut(s)	167, 888, 942
Hpy188III	TCNNGA	5 cut(s)	59, 209, 218, 240, 830
Hpy8I	GTNNAC	1 cut(s)	135
HpyAV	CCTTC	4 cut(s)	430, 508, 557, 777
HpyCH4III	ACNGT	1 cut(s)	952
HpyCH4IV	ACGT	2 cut(s)	918, 1003
HpyCH4V	TGCA	5 cut(s)	73, 275, 528, 532, 1001
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 787, 962, 971
HpyF3I	CTNAG	1 cut(s)	101
HpySE526I	ACGT	2 cut(s)	918, 1003
Hsp92II	CATG	6 cut(s)	212, 221, 490, 532, 581, 707
Ksp22I	TGATCA	6 cut(s)	40, 205, 211, 313, 883, 991
LmnI	GCTCC	6 cut(s)	159, 488, 496, 661, 778, 983
Lsp1109I	GCAGC	6 cut(s)	138, 334, 732, 749, 949, 952
LweI	GCATC	3 cut(s)	233, 334, 515
MaeI	CTAG	5 cut(s)	21, 138, 365, 729, 873
MaeII	ACGT	2 cut(s)	918, 1003
MaeIII	GTNAC	3 cut(s)	439, 919, 1004
MbiI	CCGCTC	1 cut(s)	978
MboII	GAAGA	4 cut(s)	183, 621, 627, 845
MflI	RGATCY	1 cut(s)	937
MhlI	GDGCHC	1 cut(s)	485
MluCI	AATT	5 cut(s)	592, 598, 621, 669, 943
MlyI	GAGTC	3 cut(s)	162, 371, 769
MmeI	TCCRAC	5 cut(s)	181, 190, 202, 293, 518
Mph1103I	ATGCAT	1 cut(s)	530
MseI	TTAA	1 cut(s)	984
MslI	CAYNNNNRTG	1 cut(s)	576
MspA1I	CMGCKG	1 cut(s)	740
MspI	CCGG	2 cut(s)	776, 807
MspR9I	CCNGG	1 cut(s)	846
MvaI	CCWGG	1 cut(s)	846
MwoI	GCNNNNNNNGC	4 cut(s)	79, 787, 962, 971
NcoI	CCATGG	1 cut(s)	486
NdeI	CATATG	2 cut(s)	253, 559
NlaIII	CATG	6 cut(s)	212, 221, 490, 532, 581, 707
NlaIV	GGNNCC	2 cut(s)	492, 780
NmeAIII	GCCGAG	1 cut(s)	751
NmuCI	GTSAC	1 cut(s)	439
NsiI	ATGCAT	1 cut(s)	530
NspI	RCATGY	1 cut(s)	532
PaeI	GCATGC	1 cut(s)	532
PaeR7I	CTCGAG	1 cut(s)	465
PagI	TCATGA	2 cut(s)	208, 217
PfeI	GAWTC	1 cut(s)	105
PkrI	GCNGC	6 cut(s)	128, 324, 722, 739, 964, 967
PleI	GAGTC	3 cut(s)	162, 371, 768
PpsI	GAGTC	3 cut(s)	162, 371, 768
Ppu21I	YACGTR	1 cut(s)	1004
Psp6I	CCWGG	1 cut(s)	844
PspEI	GGTNACC	1 cut(s)	439
PspFI	CCCAGC	2 cut(s)	150, 652
PspGI	CCWGG	1 cut(s)	844
PspN4I	GGNNCC	2 cut(s)	492, 780
PspPI	GGNCC	1 cut(s)	148
PspXI	VCTCGAGB	1 cut(s)	465
PsuI	RGATCY	1 cut(s)	937
PvuII	CAGCTG	1 cut(s)	740
RsaI	GTAC	8 cut(s)	134, 428, 519, 702, 727, 733, 868, 877
RsaNI	GTAC	8 cut(s)	133, 427, 518, 701, 726, 732, 867, 876
RseI	CAYNNNNRTG	1 cut(s)	576
SaqAI	TTAA	1 cut(s)	984
SatI	GCNGC	6 cut(s)	127, 323, 721, 738, 963, 966
Sau96I	GGNCC	1 cut(s)	148
ScaI	AGTACT	2 cut(s)	727, 877
SchI	GAGTC	3 cut(s)	162, 371, 769
ScrFI	CCNGG	1 cut(s)	846
SduI	GDGCHC	1 cut(s)	485
SfaNI	GCATC	3 cut(s)	233, 334, 515
SfcI	CTRYAG	2 cut(s)	713, 951
Sfr274I	CTCGAG	1 cut(s)	465
SlaI	CTCGAG	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	576
SmlI	CTYRAG	2 cut(s)	143, 465
SmoI	CTYRAG	2 cut(s)	143, 465
SpeI	ACTAGT	2 cut(s)	728, 872
SphI	GCATGC	1 cut(s)	532
Sse9I	AATT	5 cut(s)	592, 598, 621, 669, 943
SsiI	CCGC	2 cut(s)	735, 976
SspMI	CTAG	5 cut(s)	21, 138, 365, 729, 873
StyD4I	CCNGG	1 cut(s)	844
StyI	CCWWGG	2 cut(s)	444, 486
TaaI	ACNGT	1 cut(s)	952
TaiI	ACGT	2 cut(s)	921, 1006
TaqI	TCGA	2 cut(s)	171, 466
TasI	AATT	5 cut(s)	592, 598, 621, 669, 943
TatI	WGTACW	4 cut(s)	132, 700, 725, 875
TfiI	GAWTC	1 cut(s)	105
Tru1I	TTAA	1 cut(s)	984
Tru9I	TTAA	1 cut(s)	984
TscAI	CASTG	1 cut(s)	955
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	6 cut(s)	126, 322, 720, 737, 962, 965
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	5 cut(s)	108, 576, 615, 621, 627
TspRI	CASTG	1 cut(s)	955
XapI	RAATTY	1 cut(s)	943
XceI	RCATGY	1 cut(s)	532
XhoI	CTCGAG	1 cut(s)	465
XspI	CTAG	5 cut(s)	21, 138, 365, 729, 873
ZrmI	AGTACT	2 cut(s)	727, 877
Zsp2I	ATGCAT	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.