Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011531

Physical Location & Seq

Genomic Coordinates Forward (+)

35002956 .. 35004822

Gene Structure 1867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G393100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGATTTCATATTGTCCTGTGGCTCTTGAAATCTTGATGAACATGGATGATCATACCCCTACCAAAAGAAAGGTGGATGCTCTCCAACAAGACTTGCTGCGTCTGCGAAAAGAGAATGAAGCTCTGCGATTCTTGCTTACAGCTATGACCACCAAATGCAACACACTTGAGCAGCTAATCCGAGAGAAAAACAGTGAACGAAATGATCAGTTTCCGGTTGCTCAGAAGACAACACAGTTTCTTGTGAGAACCGACTCCAAAGACAACACCCTAATTGTGAAAGATGGATATCAATGGAGGAAATACGGACAGAAGGTTACGAAAGACAACCCATCATCCCCTCGAGCTTATTTCAAGTGTTCCTTGGCTCCTCGATGTCCAGTCAAGAAGAAGGTGCAGAGATGCATGGTGGATAAGTCTCTTCTTGTGGCAACATATGAAGGACAGCACAACCATGAAGCCATCAATGGCTCACCACTTGGACAATTTTCATGTTCATCATCCACAGCTGTTCATAATAATAATATTATTATTAATCCTATTAATTTTCCTTCGCATGGTACCTCAGCAGATATTAATAATAATGATGTCATAAATATTGTTAGCCCTTCGAATTCTTCTCGGCCGGTGCCTATCACCCTTGATCTGACACTCTCGGGATCCACGAGCAATCAAGAAAATAATAGATCAGCTGGAAGCCCTCAAAACTCATCATCAAGTGCCCAGAACATCGACTGTGAAAGTAGAATTGAAGATTACGTTGCTTATTTAACCAAAGATCATAATTTCACACAAGCTTTGGCTGCTGCAGTTGCAAGCTCCATTACAAGACCTTCTGCAGACAGACAAAACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002237 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

286

Amino Acids

31.72

Weight (kDa)

8.78

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011531)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g41070 FvH4_2g41070 FvH4_2g41070
malus_domestica	MD00G1143600.v1.1 MD15G1039600.v1.1
prunus_persica	Prupe.1G393100_v2.0.a1
pyrus_communis	pycom08g04720 pycom08g04730 pycom08g04740 pycom15g03700
rosa_chinensis	RchiOBHm_Chr6g0299481
rosa_laevigata	RLG00000011428
rosa_multiflora	Rmu_sc0001184.1_g000007
rosa_roxburghii	Rroxscaffold_7G00168640
rosa_rugosa	Rorug06G0289100
rosa_samantha	Rh6AG400400 Rh6BG409100 Rh6CG414600 Rh6DG401500
rosa_wichuraiana	Rw6G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	560
AccB1I	GGYRCC	2 cut(s)	560, 628
AclWI	GGATC	2 cut(s)	654, 667
AcoI	YGGCCR	1 cut(s)	623
AcsI	RAATTY	1 cut(s)	613
AfaI	GTAC	1 cut(s)	562
AfiI	CCNNNNNNNGG	1 cut(s)	557
AgsI	TTSAA	3 cut(s)	29, 355, 752
AluBI	AGCT	8 cut(s)	122, 143, 175, 347, 509, 692, 797, 819
AluI	AGCT	8 cut(s)	122, 143, 175, 347, 509, 692, 797, 819
Alw26I	GTCTC	1 cut(s)	423
AlwI	GGATC	2 cut(s)	654, 667
Ama87I	CYCGRG	2 cut(s)	342, 655
AoxI	GGCC	1 cut(s)	623
ApeKI	GCWGC	4 cut(s)	97, 172, 803, 806
ApoI	RAATTY	1 cut(s)	613
AseI	ATTAAT	3 cut(s)	534, 543, 576
Asp718I	GGTACC	1 cut(s)	560
AsuHPI	GGTGA	2 cut(s)	465, 628
AsuII	TTCGAA	1 cut(s)	611
AvaI	CYCGRG	2 cut(s)	342, 655
BaeGI	GKGCMC	1 cut(s)	724
BamHI	GGATCC	1 cut(s)	659
BanI	GGYRCC	2 cut(s)	560, 628
BauI	CACGAG	1 cut(s)	664
BbsI	GAAGAC	1 cut(s)	233
BbvCI	CCTCAGC	1 cut(s)	565
BbvI	GCAGC	4 cut(s)	84, 184, 790, 793
BccI	CCATC	3 cut(s)	278, 340, 470
BclI	TGATCA	2 cut(s)	49, 205
BcoDI	GTCTC	1 cut(s)	423
BfmI	CTRYAG	2 cut(s)	807, 837
BisI	GCNGC	4 cut(s)	98, 173, 804, 807
BlsI	GCNGC	4 cut(s)	99, 174, 805, 808
BmeT110I	CYCGRG	2 cut(s)	342, 655
BmiI	GGNNCC	4 cut(s)	369, 562, 630, 661
BmsI	GCATC	2 cut(s)	67, 392
BpiI	GAAGAC	1 cut(s)	233
Bpu10I	CCTNAGC	1 cut(s)	565
Bpu14I	TTCGAA	1 cut(s)	611
BpuEI	CTTGAG	1 cut(s)	188
BsaBI	GATNNNNATC	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	363
BsaWI	WCCGGW	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
Bse118I	RCCGGY	1 cut(s)	625
Bse1I	ACTGG	2 cut(s)	380, 853
Bse8I	GATNNNNATC	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	4 cut(s)	52, 82, 335, 500
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseMII	CTCAG	2 cut(s)	236, 579
BseNI	ACTGG	2 cut(s)	380, 853
BseRI	GAGGAG	1 cut(s)	360
BseSI	GKGCMC	1 cut(s)	724
BseX3I	CGGCCG	1 cut(s)	623
BseXI	GCAGC	4 cut(s)	84, 184, 790, 793
BsgI	GTGCAG	1 cut(s)	416
Bsh1285I	CGRYCG	1 cut(s)	626
BshFI	GGCC	1 cut(s)	625
BshNI	GGYRCC	2 cut(s)	560, 628
BsiEI	CGRYCG	1 cut(s)	626
BsiHKCI	CYCGRG	2 cut(s)	342, 655
BsiSI	CCGG	2 cut(s)	215, 626
BslI	CCNNNNNNNGG	1 cut(s)	557
BsmAI	GTCTC	1 cut(s)	423
BsnI	GGCC	1 cut(s)	625
BsoBI	CYCGRG	2 cut(s)	342, 655
Bsp119I	TTCGAA	1 cut(s)	611
Bsp1286I	GDGCHC	1 cut(s)	724
Bsp143I	GATC	6 cut(s)	49, 205, 643, 659, 686, 778
BspANI	GGCC	1 cut(s)	625
BspCNI	CTCAG	2 cut(s)	235, 578
BspLI	GGNNCC	4 cut(s)	369, 562, 630, 661
BspMAI	CTGCAG	2 cut(s)	811, 841
BspPI	GGATC	2 cut(s)	654, 667
BspT104I	TTCGAA	1 cut(s)	611
BspT107I	GGYRCC	2 cut(s)	560, 628
BsrFI	RCCGGY	1 cut(s)	625
BsrI	ACTGG	2 cut(s)	380, 853
BssAI	RCCGGY	1 cut(s)	625
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	6 cut(s)	49, 205, 643, 659, 686, 778
BssSI	CACGAG	1 cut(s)	664
BssT1I	CCWWGG	1 cut(s)	363
Bst2BI	CACGAG	1 cut(s)	664
Bst4CI	ACNGT	3 cut(s)	194, 237, 737
Bst6I	CTCTTC	1 cut(s)	426
BstBI	TTCGAA	1 cut(s)	611
BstC8I	GCNNGC	1 cut(s)	817
BstDEI	CTNAG	2 cut(s)	222, 565
BstF5I	GGATG	4 cut(s)	52, 82, 335, 500
BstKTI	GATC	6 cut(s)	52, 208, 646, 662, 689, 781
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	6 cut(s)	49, 205, 643, 659, 686, 778
BstMCI	CGRYCG	1 cut(s)	626
BstMWI	GCNNNNNNNGC	4 cut(s)	103, 133, 803, 812
BstSFI	CTRYAG	2 cut(s)	807, 837
BstSLI	GKGCMC	1 cut(s)	724
BstV1I	GCAGC	4 cut(s)	84, 184, 790, 793
BstV2I	GAAGAC	1 cut(s)	233
BstX2I	RGATCY	1 cut(s)	659
BstYI	RGATCY	1 cut(s)	659
BstZI	CGGCCG	1 cut(s)	623
BsuRI	GGCC	1 cut(s)	625
BtsCI	GGATG	4 cut(s)	52, 82, 335, 500
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	817
Cfr10I	RCCGGY	1 cut(s)	625
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	561
CviAII	CATG	5 cut(s)	43, 406, 455, 492, 557
CviQI	GTAC	1 cut(s)	561
DdeI	CTNAG	2 cut(s)	222, 565
DpnI	GATC	6 cut(s)	51, 207, 645, 661, 688, 780
DpnII	GATC	6 cut(s)	49, 205, 643, 659, 686, 778
EaeI	YGGCCR	1 cut(s)	623
EagI	CGGCCG	1 cut(s)	623
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
EclXI	CGGCCG	1 cut(s)	623
Eco130I	CCWWGG	1 cut(s)	363
Eco32I	GATATC	1 cut(s)	290
Eco52I	CGGCCG	1 cut(s)	623
Eco88I	CYCGRG	2 cut(s)	342, 655
EcoRI	GAATTC	1 cut(s)	613
EcoRV	GATATC	1 cut(s)	290
EcoT14I	CCWWGG	1 cut(s)	363
EcoT22I	ATGCAT	1 cut(s)	407
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	5 cut(s)	46, 409, 458, 495, 560
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FatI	CATG	5 cut(s)	42, 405, 454, 491, 556
FauNDI	CATATG	1 cut(s)	436
FbaI	TGATCA	2 cut(s)	49, 205
Fnu4HI	GCNGC	4 cut(s)	98, 173, 804, 807
FokI	GGATG	4 cut(s)	59, 89, 322, 487
Fsp4HI	GCNGC	4 cut(s)	98, 173, 804, 807
GluI	GCNGC	4 cut(s)	98, 173, 804, 807
HaeIII	GGCC	1 cut(s)	625
HapII	CCGG	2 cut(s)	215, 626
HgaI	GACGC	1 cut(s)	89
Hin1II	CATG	5 cut(s)	46, 409, 458, 495, 560
HindIII	AAGCTT	1 cut(s)	795
HinfI	GANTC	2 cut(s)	129, 254
HpaII	CCGG	2 cut(s)	215, 626
HphI	GGTGA	2 cut(s)	465, 628
Hpy166II	GTNNAC	1 cut(s)	197
Hpy188I	TCNGA	3 cut(s)	182, 225, 648
Hpy188III	TCNNGA	5 cut(s)	26, 34, 385, 657, 674
Hpy8I	GTNNAC	1 cut(s)	197
HpyAV	CCTTC	6 cut(s)	307, 385, 434, 561, 618, 843
HpyCH4III	ACNGT	3 cut(s)	194, 237, 737
HpyCH4IV	ACGT	1 cut(s)	759
HpyCH4V	TGCA	6 cut(s)	159, 397, 405, 809, 815, 839
HpyF10VI	GCNNNNNNNGC	4 cut(s)	103, 133, 803, 812
HpyF3I	CTNAG	2 cut(s)	222, 565
HpySE526I	ACGT	1 cut(s)	759
Hsp92II	CATG	5 cut(s)	46, 409, 458, 495, 560
KpnI	GGTACC	1 cut(s)	564
Ksp22I	TGATCA	2 cut(s)	49, 205
Kzo9I	GATC	6 cut(s)	49, 205, 643, 659, 686, 778
LmnI	GCTCC	2 cut(s)	373, 824
LpnPI	CCDG	6 cut(s)	30, 228, 393, 639, 678, 737
Lsp1109I	GCAGC	4 cut(s)	84, 184, 790, 793
LweI	GCATC	2 cut(s)	67, 392
MaeII	ACGT	1 cut(s)	759
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	6 cut(s)	51, 207, 645, 661, 688, 780
MboI	GATC	6 cut(s)	49, 205, 643, 659, 686, 778
MboII	GAAGA	5 cut(s)	238, 400, 413, 609, 764
MflI	RGATCY	1 cut(s)	659
MhlI	GDGCHC	1 cut(s)	724
MluCI	AATT	6 cut(s)	273, 485, 544, 613, 747, 784
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	5 cut(s)	291, 351, 381, 574, 711
Mph1103I	ATGCAT	1 cut(s)	407
MseI	TTAA	4 cut(s)	534, 543, 576, 770
MslI	CAYNNNNRTG	1 cut(s)	453
MspA1I	CMGCKG	2 cut(s)	509, 692
MspI	CCGG	2 cut(s)	215, 626
MwoI	GCNNNNNNNGC	4 cut(s)	103, 133, 803, 812
NdeI	CATATG	1 cut(s)	436
NdeII	GATC	6 cut(s)	49, 205, 643, 659, 686, 778
NlaIII	CATG	5 cut(s)	46, 409, 458, 495, 560
NlaIV	GGNNCC	4 cut(s)	369, 562, 630, 661
NmeAIII	GCCGAG	1 cut(s)	601
NsiI	ATGCAT	1 cut(s)	407
NspV	TTCGAA	1 cut(s)	611
PaeR7I	CTCGAG	1 cut(s)	342
PcsI	WCGNNNNNNNCGW	1 cut(s)	662
PfeI	GAWTC	1 cut(s)	129
PkrI	GCNGC	4 cut(s)	99, 174, 805, 808
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
PshBI	ATTAAT	3 cut(s)	534, 543, 576
PspN4I	GGNNCC	4 cut(s)	369, 562, 630, 661
PspXI	VCTCGAGB	1 cut(s)	342
PstI	CTGCAG	2 cut(s)	811, 841
PsuI	RGATCY	1 cut(s)	659
PvuII	CAGCTG	2 cut(s)	509, 692
RsaI	GTAC	1 cut(s)	562
RsaNI	GTAC	1 cut(s)	561
RseI	CAYNNNNRTG	1 cut(s)	453
SaqAI	TTAA	4 cut(s)	534, 543, 576, 770
SatI	GCNGC	4 cut(s)	98, 173, 804, 807
Sau3AI	GATC	6 cut(s)	49, 205, 643, 659, 686, 778
SchI	GAGTC	1 cut(s)	248
SduI	GDGCHC	1 cut(s)	724
SfaNI	GCATC	2 cut(s)	67, 392
SfcI	CTRYAG	2 cut(s)	807, 837
Sfr274I	CTCGAG	1 cut(s)	342
SfuI	TTCGAA	1 cut(s)	611
SlaI	CTCGAG	1 cut(s)	342
SmiMI	CAYNNNNRTG	1 cut(s)	453
SmlI	CTYRAG	2 cut(s)	167, 342
SmoI	CTYRAG	2 cut(s)	167, 342
Sse9I	AATT	6 cut(s)	273, 485, 544, 613, 747, 784
SspI	AATATT	2 cut(s)	526, 598
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	3 cut(s)	194, 237, 737
TaiI	ACGT	1 cut(s)	762
TaqI	TCGA	4 cut(s)	343, 373, 611, 732
TasI	AATT	6 cut(s)	273, 485, 544, 613, 747, 784
TfiI	GAWTC	1 cut(s)	129
Tru1I	TTAA	4 cut(s)	534, 543, 576, 770
Tru9I	TTAA	4 cut(s)	534, 543, 576, 770
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	4 cut(s)	97, 172, 803, 806
TspDTI	ATGAA	7 cut(s)	53, 132, 453, 471, 480, 486, 503
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	1 cut(s)	199
VspI	ATTAAT	3 cut(s)	534, 543, 576
XapI	RAATTY	1 cut(s)	613
XcmI	CCANNNNNNNNNTGG	1 cut(s)	70
XhoI	CTCGAG	1 cut(s)	342
Zsp2I	ATGCAT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.